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2023-06-04gnu: agda: Update to 2.6.3 and switch to git-fetch....* gnu/packages/agda.scm (agda): Update to 2.6.3, switch to fetching using git so that doc files are included, and add new dependency ghc-vector-hashtables. Josselin Poiret
2023-06-04gnu: Add ghc-vector-hashtables....* gnu/packages/haskell-xyz.scm (ghc-vector-hashtables): New variable. Josselin Poiret
2023-06-04gnu: Add ghc-peano....* gnu/packages/haskell-xyz.scm (ghc-peano): New variable. Josselin Poiret
2023-06-04gnu: sbsigntools: Update to 0.9.5....This fixes a build failure with openssl-3. * gnu/packages/efi.scm (sbsigntools): Update to 0.9.5. [arguments]: Remove trailing #t's. Use Gexps. Use "this-package-input". Simplify lambdas. [inputs]: Remove labels. Signed-off-by: Josselin Poiret <dev@jpoiret.xyz> kiasoc5
2023-06-04gnu: proot: Update to 5.4.0 and fix clone3 behavior....* gnu/packages/patches/proot-add-clone3.patch: New patch. * gnu/packages/linux.scm (proot): Update to 5.4.0, and add pending upstream patch to fix buggy pthread support. * gnu/local.mk (dist_patch_DATA): Register it. Josselin Poiret
2023-06-04gnu: heimdal: Drop obsolete and insecure user tools....According to messages from the Heimdal maintainers Brian May and Nico Williams, no one should be using their version of 'su' anymore. It was deleted from the development branch five years ago [1] and is only being shipped because the 7.8.0 is based on an older, stable branch. [1] https://github.com/heimdal/heimdal/commit/8a77f45aff366b1cd8c70c43ce63eb16a0c9839c Following the directions from the maintainers, this commit drops all executables built from the ./appl folder via deletion of that SUBDIR from the top-level Makefile.am. Unfortunately, the heimdal-discuss mailing list does not appear to have a public archive. The relevant SMTP Message-Id was: <MDAEMON-F202305111940.AA401569md5001000003030@sequoia-grove.ad.secure-endpoints.com> * gnu/packages/kerberos.scm (heimdal): Drop obsolete and insecure user tools. Signed-off-by: Josselin Poiret <dev@jpoiret.xyz> Felix Lechner
2023-06-04gnu: heimdal: Run autoreconf....* gnu/packages/kerberos.scm (heimdal): Run autoreconf. Signed-off-by: Josselin Poiret <dev@jpoiret.xyz> Felix Lechner
2023-06-04gnu: mpd: Split outputs....The HTML manual accounts for more than 40% of the package size. * gnu/packages/mpd.scm (mpd)[outputs]: Add 'doc' output. [arguments]<#:phases>: Add ‘split-package’. Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com> Bruno Victal
2023-06-04gnu: mpd: Enable tests....With this, ninja will no longer report “no work to do” when inside the `check' phase. * gnu/packages/mpd.scm [arguments]<#:configure-flags>: Add “-Dtest=true”. [native-inputs]: Add googletest and zip. Remove cmake. Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com> Bruno Victal
2023-06-04gnu: mpd: Update to 0.23.13....* gnu/packages/mpd.scm (mpd): Update to 0.23.13. Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com> Leo Famulari
2023-06-04gnu: d-feet: Fix build errors when using Meson 1.1.0....Fix the build error: data/meson.build:15:0: ERROR: Function does not take positional arguments. data/meson.build:27:0: ERROR: Function does not take positional arguments. * gnu/packages/patches/d-feet-drop-unused-meson-argument.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it here. * gnu/packages/gnome.scm (d-feet)[source]: Use it here. Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com> Zhu Zihao
2023-06-03gnu: font-charter: Remove woff2 output....The font-build-system now installs web fonts too. So, a separate woff2 output is not necessary. * gnu/packages/fonts.scm (font-charter)[outputs, arguments]: Delete. Arun Isaac
2023-06-03gnu: notcurses: Enable building without pandoc....* gnu/packages/notcurses.scm (notcurses)[arguments]: Adjust configure-flags to not use pandoc on systems where pandoc isn't supported. [native-inputs]: Don't include pandoc on systems where it isn't supported. Efraim Flashner
2023-06-03gnu: emacs-straight-el: Update to 0-2.039e5c9....* gnu/packages/emacs-xyz.scm (emacs-straight-el): Update to 0-2.039e5c9. Signed-off-by: Christopher Baines <mail@cbaines.net> Hilton Chain
2023-06-03gnu: guile-png: Update to 0.5.0....* gnu/packages/guile-xyz.scm (guile-png): Update to 0.5.0. Signed-off-by: Christopher Baines <mail@cbaines.net> Artyom V. Poptsov
2023-06-03gnu: python-zulip: Fix test failure....* gnu/packages/messaging.scm (python-zulip): Fix test failure. Signed-off-by: Christopher Baines <mail@cbaines.net> gemmaro
2023-06-03gnu: guix-build-coordinator: Update to 0-85.c44d485....* gnu/packages/package-management.scm (guix-build-coordinator): Update to 0-85.c44d485. Christopher Baines
2023-06-03gnu: Remove obs-spectralizer....As project no longer developed and not building with current obs. * gnu/packages/video.scm (obs-spectralizer): Remove variable. Signed-off-by: Christopher Baines <mail@cbaines.net> Andy Tai
2023-06-03gnu: Add s7....* gnu/packages/lisp.scm (s7): New variable. Signed-off-by: 宋文武 <iyzsong@member.fsf.org> Antero Mejr
2023-06-03gnu: Add s7-bootstrap....* gnu/packages/lisp.scm (s7-bootstrap): New variable. Signed-off-by: 宋文武 <iyzsong@member.fsf.org> Antero Mejr
2023-06-03gnu: notcurses: Update to 3.0.9....* gnu/packages/notcurses.scm (notcurses): Update to 3.0.9. Signed-off-by: 宋文武 <iyzsong@member.fsf.org> Antero Mejr
2023-06-03gnu: r-biased-urn: Update to 2.0.10....* gnu/packages/statistics.scm (r-biased-urn): Update to 2.0.10. Ricardo Wurmus
2023-06-03gnu: r-matrixstats: Update to 1.0.0....* gnu/packages/statistics.scm (r-matrixstats): Update to 1.0.0. Ricardo Wurmus
2023-06-03gnu: r-mvtnorm: Update to 1.2-0....* gnu/packages/statistics.scm (r-mvtnorm): Update to 1.2-0. Ricardo Wurmus
2023-06-03gnu: r-stringfish: Update to 0.15.8....* gnu/packages/cran.scm (r-stringfish): Update to 0.15.8. Ricardo Wurmus
2023-06-03gnu: r-scico: Update to 1.4.0....* gnu/packages/cran.scm (r-scico): Update to 1.4.0. Ricardo Wurmus
2023-06-03gnu: r-shapforxgboost: Update to 0.1.3....* gnu/packages/cran.scm (r-shapforxgboost): Update to 0.1.3. Ricardo Wurmus
2023-06-03gnu: r-projpred: Update to 2.6.0....* gnu/packages/cran.scm (r-projpred): Update to 2.6.0. [propagated-inputs]: Remove r-ucminf; add r-scales. Ricardo Wurmus
2023-06-03gnu: r-stanheaders: Update to 2.26.26....* gnu/packages/cran.scm (r-stanheaders): Update to 2.26.26. Ricardo Wurmus
2023-06-03gnu: r-regsem: Update to 1.9.5....* gnu/packages/cran.scm (r-regsem): Update to 1.9.5. Ricardo Wurmus
2023-06-03gnu: r-adabag: Update to 5.0....* gnu/packages/cran.scm (r-adabag): Update to 5.0. [propagated-inputs]: Add r-consrank, r-dplyr, and r-tidyr. Ricardo Wurmus
2023-06-03gnu: r-assertive-code: Update to 0.0-4....* gnu/packages/cran.scm (r-assertive-code): Update to 0.0-4. Ricardo Wurmus
2023-06-03gnu: r-ontologyindex: Update to 2.11....* gnu/packages/cran.scm (r-ontologyindex): Update to 2.11. Ricardo Wurmus
2023-06-03gnu: r-performance: Update to 0.10.4....* gnu/packages/cran.scm (r-performance): Update to 0.10.4. Ricardo Wurmus
2023-06-03gnu: r-biasedurn: Update to 2.0.10....* gnu/packages/cran.scm (r-biasedurn): Update to 2.0.10. Ricardo Wurmus
2023-06-03gnu: r-maptools: Update to 1.1-7....* gnu/packages/cran.scm (r-maptools): Update to 1.1-7. Ricardo Wurmus
2023-06-03gnu: r-catdap: Update to 1.3.7....* gnu/packages/cran.scm (r-catdap): Update to 1.3.7. [propagated-inputs]: Add r-rcolorbrewer. Ricardo Wurmus
2023-06-03gnu: r-ucminf: Update to 1.2.0....* gnu/packages/cran.scm (r-ucminf): Update to 1.2.0. Ricardo Wurmus
2023-06-03gnu: r-sp: Update to 1.6-1....* gnu/packages/cran.scm (r-sp): Update to 1.6-1. Ricardo Wurmus
2023-06-03gnu: r-ggrastr: Update to 1.0.2....* gnu/packages/cran.scm (r-ggrastr): Update to 1.0.2. Ricardo Wurmus
2023-06-03gnu: r-ggpicrust2: Update to 1.7.0....* gnu/packages/bioconductor.scm (r-ggpicrust2): Update to 1.7.0. [propagated-inputs]: Add r-circlize. [native-inputs]: Add r-knitr. Ricardo Wurmus
2023-06-03gnu: r-rmarkdown: Update to 2.22....* gnu/packages/statistics.scm (r-rmarkdown): Update to 2.22. [properties]: Add hints to the updater. Ricardo Wurmus
2023-06-03gnu: r-rgdal: Update to 1.6-7....* gnu/packages/cran.scm (r-rgdal): Update to 1.6-7. [properties]: Add hints to the updater. Ricardo Wurmus
2023-06-03gnu: Add r-consrank....* gnu/packages/cran.scm (r-consrank): New variable. Ricardo Wurmus
2023-06-02gnu: Add r-singlet....* gnu/packages/bioinformatics.scm (r-singlet): New variable. Ricardo Wurmus
2023-06-02gnu: Add r-rcppml/devel....* gnu/packages/machine-learning.scm (r-rcppml/devel): New variable. Ricardo Wurmus
2023-06-02gnu: Add python-cell2cell....* gnu/packages/bioinformatics.scm (python-cell2cell): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Navid Afkhami
2023-06-02gnu: Add coccinelle....* gnu/packages/patchutils.scm (coccinelle): New variable. Signed-off-by: Jean-Pierre De Jesus DIAZ <jean@foundationdevices.com> Signed-off-by: Ludovic Courtès <ludo@gnu.org> Jean-Pierre De Jesus DIAZ
2023-06-02gnu: Add ocaml-pyml....* gnu/packages/ocaml.ml (ocaml-pyml): New variable. Signed-off-by: Jean-Pierre De Jesus DIAZ <jean@foundationdevices.com> Signed-off-by: Ludovic Courtès <ludo@gnu.org> Jean-Pierre De Jesus DIAZ
2023-06-02gnu: Add ocaml-stdcompat....* gnu/packages/ocaml.scm (ocaml-stdcompat): New variable. Signed-off-by: Jean-Pierre De Jesus DIAZ <jean@foundationdevices.com> Signed-off-by: Ludovic Courtès <ludo@gnu.org> Jean-Pierre De Jesus DIAZ