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2020-03-06gnu: r-lava: Update to 1.6.7....* gnu/packages/cran.scm (r-lava): Update to 1.6.7. Ricardo Wurmus
2020-03-06gnu: Update python-scikit-learn to 0.22.1....* gnu/packages/machine-learning.scm (python-scikit-learn): Update to 0.22.1; Add python-joblib to native-inputs to run the test suite. Roel Janssen
2020-03-06gnu: Add soci....* gnu/packages/databases.scm (soci): New variable. Pierre Neidhardt
2020-03-06gnu: fmt: Update to 6.1.2....* gnu/packages/pretty-print.scm (fmt): Update to 6.1.2. Pierre Neidhardt
2020-03-06gnu: fmt: Use HTTPS and git-fetch....* gnu/packages/pretty-print.scm (fmt)[source]: Use git-fetch. [home-page]: Use HTTPS. Pierre Neidhardt
2020-03-06gnu: python-aiohttp: Update to 3.6.2....* gnu/packages/python-web.scm (python-aiohttp): Update to 3.6.2. Ricardo Wurmus
2020-03-06gnu: python-scanpy: Update to 1.4.5.1....* gnu/packages/bioinformatics.scm (python-scanpy): Update to 1.4.5.1. [source]: Fetch from pypi. [propagated-inputs]: Add python-legacy-api-wrap, python-packaging, python-patsy, and python-umap-learn. [native-inputs]: Add python-setuptools-scm. Ricardo Wurmus
2020-03-06gnu: Add python-legacy-api-wrap....* gnu/packages/python-xyz.scm (python-legacy-api-wrap): New variable. Ricardo Wurmus
2020-03-06gnu: Add python-get-version....* gnu/packages/python-xyz.scm (python-get-version): New variable. Ricardo Wurmus
2020-03-06gnu: Add python-pytest-black....* gnu/packages/python-xyz.scm (python-pytest-black): New variable. Ricardo Wurmus
2020-03-06gnu: python-black: Update to 19.10b0....* gnu/packages/python-xyz.scm (python-black): Update to 19.10b0. [arguments]: Patch tests. [propagated-inputs]: Add python-pathspec, python-regex, and python-typed-ast. [native-inputs]: Add python-setuptools-scm. Ricardo Wurmus
2020-03-06gnu: Add python-pathspec....* gnu/packages/python-xyz.scm (python-pathspec): New variable. Ricardo Wurmus
2020-03-06gnu: python-tables: Use later hdf5 version....* gnu/packages/python-xyz.scm (python-tables)[inputs]: Replace hdf5 with hdf5-1.10. Ricardo Wurmus
2020-03-06gnu: python-tables: Do not detect CPU features....* gnu/packages/python-xyz.scm (python-tables)[arguments]: Add phase "disable-tuning". Ricardo Wurmus
2020-03-05gnu: java-openjfx-build: Add snippet....* gnu/packages/java.scm (java-openjfx-build)[source]: Add snippet to remove bundled gradle. Björn Höfling
2020-03-05gnu: python-anndata: Update to 0.7.1....* gnu/packages/python-xyz.scm (python-anndata): Update to 0.7.1. [arguments]: Move check phase after install phase; delete one test. [propagated-inputs]: Add python-importlib-metadata, python-numcodecs, python-packaging, and python-zarr. [native-inputs]: Add python-joblib, python-pytest, and python-setuptools-scm. Ricardo Wurmus
2020-03-05gnu: Add python-zarr....* gnu/packages/python-xyz.scm (python-zarr): New variable. Ricardo Wurmus
2020-03-05gnu: Add python-asciitree....* gnu/packages/python-xyz.scm (python-asciitree): New variable. Ricardo Wurmus
2020-03-05gnu: Add python-numcodecs....* gnu/packages/python-xyz.scm (python-numcodecs): New variable. Ricardo Wurmus
2020-03-05gnu: python-h5py: Update to 2.10.0....* gnu/packages/python-xyz.scm (python-h5py): Update to 2.10.0. [inputs]: Use hdf5-1.10. [native-inputs]: Add pkg-config. Ricardo Wurmus
2020-03-05gnu: Add emacs-ddskk....* gnu/packages/emacs-xyz.scm (emacs-ddskk): New variable. Masaya Tojo
2020-03-05gnu: libraqm: Parametrize version....* gnu/packages/fontutils.scm (libraqm)[source]: Parametrize version. Nicolas Goaziou
2020-03-05gnu: Add libraqm....* gnu/packages/fontutils.scm (libraqm): New variable. Nicolas Goaziou
2020-03-05gnu: sbcl-cl-webkit: Update to 20200227....* gnu/packages/lisp-xyz.scm (sbcl-cl-webkit): Update to 20200227. Pierre Neidhardt
2020-03-05gnu: Add guile-xapian....* gnu/packages/guile-xyz.scm (guile-xapian, guile3.0-xapian): New variables. Arun Isaac
2020-03-05gnu: emacs-tldr: Update to 0-1.7203d1b....* gnu/packages/emacs-xyz.scm (emacs-tldr): Update to 0-1.7203d1b. [propagated-inputs]: Add emacs-request. Arun Isaac
2020-03-05gnu: coq-mathcomp: Update home page URI....* gnu/packages/coq.scm (coq-mathcomp)[home-page]: Update URI. Björn Höfling
2020-03-05gnu: squashfs-tools: Update home page URI....* gnu/packages/compression.scm (squashfs-tools)[home-page]: Update URI. Björn Höfling
2020-03-05gnu: pbzip2: Use archived home-page....* gnu/packages/compression.scm (pbzip2)[home-page]: Load from archive.org Björn Höfling
2020-03-05gnu: domainfinder: Update home page URI....* gnu/packages/chemistry.scm (domainfinder)[home-page]: Update URI. Björn Höfling
2020-03-05gnu: nmoldyn: Upate home page URI....* gnu/packages/chemistry.scm (nmoldyn)[home-page]: Update URI. Björn Höfling
2020-03-04gnu: SuiteSparse: Update to 5.7.1....* gnu/packages/maths.scm (suitesparse): Update to 5.7.1. [source]: The latest releases of SuiteSparse have only been published on GitHub. Fetch from git tag as GitHub releases page only contains autogenerated tarballs that guix lint complains about. Apply new patch for Mongoose's CMakeList.txt to find SuiteSparse_config. [arguments]: Add CMake flags used by new components GraphBLAS and Mongoose. [native-inputs]: Add CMake and m4 needed to build GraphBLAS and Mongoose. * gnu/packages/patches/suitesparse-mongoose-cmake.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Leo Famulari <leo@famulari.name> Felix Gruber
2020-03-04gnu: ceph: Update to 14.2.8....* gnu/packages/patches/ceph-boost-compat.patch, gnu/packages/patches/ceph-volume-respect-PATH.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/storage.scm (ceph): Update to 14.2.8. [source](patches): Remove obsolete. Marius Bakke
2020-03-04gnu: i3-wm: Update to 4.18....* gnu/packages/wm.scm (i3-wm): Update to 4.18. Marius Bakke
2020-03-04gnu: kodi: Update to 18.6....* gnu/packages/kodi.scm (kodi): Update to 18.6. Marius Bakke
2020-03-04gnu: libgit2: Update to 0.99.0....* gnu/packages/patches/libgit2-avoid-python.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/version-control.scm (libgit2): Update to 0.99.0. [source](patches): Remove 'libgit2-avoid-python.patch'. [source](snippet): Preserve bundled copy of http-parser. [arguments]: Remove "-DUSE_SHA1DC" from #:configure-flags, which is no longer optional and enabled by default. Add "-DUSE_NTLMCLIENT=OFF" and "-DREGEX_BACKEND=pcre2". Add phase 'fix-pcre2-reference'. [inputs]: Remove HTTP-PARSER. [propagated-inputs]: Add PCRE2. [native-inputs]: Remove GUILE-2.2. Add PYTHON. Marius Bakke
2020-03-04gnu: enchant: Update to 2.2.8....* gnu/packages/enchant.scm (enchant): Update to 2.2.8. Marius Bakke
2020-03-04gnu: wpebackend-fdo: Update to 1.4.2....* gnu/packages/webkit.scm (wpebackend-fdo): Update to 1.4.2. Marius Bakke
2020-03-04gnu: re2: Update to 2020-03-03....* gnu/packages/regex.scm (re2): Update to 2020-03-03. Marius Bakke
2020-03-04gnu: ibus: Update to 1.5.22....* gnu/packages/ibus.scm (ibus): Update to 1.5.22. Marius Bakke
2020-03-04gnu: libsoup: Update to 2.68.4....* gnu/packages/gnome.scm (libsoup): Update to 2.68.4. Marius Bakke
2020-03-04gnu: appstream-glib: Update to 0.7.17....* gnu/packages/patches/appstream-glib-2020.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/glib.scm (appstream-glib): Update to 0.7.17. [source](patches): Remove. Marius Bakke
2020-03-04gnu: gcc-8: Update to 8.4.0....* gnu/packages/gcc.scm (gcc-8): Update to 8.4.0. Efraim Flashner
2020-03-04gnu: libgee: Update to 0.20.3....* gnu/packages/gnome.scm (libgee): Update to 0.20.3. Efraim Flashner
2020-03-04gnu: ardour: Use HTTPS home page....* gnu/packages/audio.scm (ardour)[home-page]: Use HTTPS. Tobias Geerinckx-Rice
2020-03-04gnu: Update pypi.python.org home pages & use HTTPS....* gnu/packages/check.scm (python-unittest2, python-pytest-localserver) (python-discover)[home-page]: Follow (HTTPS) redirections. * gnu/packages/fontutils.scm (python2-defcon)[home-page]: Likewise. * gnu/packages/glib.scm (python2-pygobject-2)[home-page]: Likewise. * gnu/packages/graph.scm (python-igraph)[home-page]: Likewise. * gnu/packages/graphviz.scm (xdot)[home-page]: Likewise. * gnu/packages/pdf.scm (python-poppler-qt5)[home-page]: Likewise. * gnu/packages/python-web.scm (python-zope-event, python-zope-testing) (python-zope-testrunner, python-zope-i18nmessageid, python-zope-schema) (python-zope-configuration, python-zope-proxy, python-zope-location) (python-zope-security))[home-page]: Likewise. * gnu/packages/python-xyz.scm (python-setuptools,python-six) (python2-dogtail, python2-enum, python-enum34, python-unidecode) (python-numpydoc, python-decorator, python-drmaa, python-pathlib2) (python-ly, python-msgpack, python-termcolor, python-colorama) (python-pluggy, python2-pathlib2, python-rfc3987)[home-page]: Likewise. Tobias Geerinckx-Rice
2020-03-04gnu: python-pyodbc: Update to 4.0.30....* gnu/packages/databases.scm (python-pyodbc): Update to 4.0.30. Tobias Geerinckx-Rice
2020-03-04gnu: crispy-doom: Update to 5.7.1....* gnu/packages/games.scm (crispy-doom): Update to 5.7.1. Tobias Geerinckx-Rice
2020-03-04gnu: sg3-utils: Update to 1.45....* gnu/packages/scsi.scm (sg3-utils): Update to 1.45. Tobias Geerinckx-Rice
2020-03-04gnu: girara: Update to 0.3.4....* gnu/packages/gtk.scm (girara): Update to 0.3.4. Tobias Geerinckx-Rice
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