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2016-09-28gnu: sra-tools: Fix build on i686....* gnu/packages/bioinformatics.scm (sra-tools)[arguments]: Pass "VDB_LIBDIR" in make-flags; dynamically link libmagic. Ricardo Wurmus
2016-09-28gnu: tilda: Update to 1.3.3....* gnu/packages/terminals.scm (tilda): Update to 1.3.3. Efraim Flashner
2016-09-28gnu: Add xonsh....* gnu/packages/shells.scm (xonsh): New variable. Signed-off-by: Leo Famulari <leo@famulari.name> Stefan Reichoer
2016-09-28gnu: attic: Superseded by borg....* gnu/packages/backup.scm (attic)[properties]: New field. Leo Famulari
2016-09-28gnu: nestopia-ue: Update to version 1.47.Taylan Ulrich Bayırlı/Kammer
2016-09-28gnu: higan: Update to version 101....* gnu/packages/games.scm (higan): Update to version 101. Taylan Ulrich Bayırlı/Kammer
2016-09-28gnu: git: Add input perl-term-readkey for 'git-svn'....* gnu/packages/version-control.scm (git)[inputs]: Add perl-term-readkeys. [arguments]: Add perl-term-readkeys to the PERL5LIB of `git-svn'. Signed-off-by: 宋文武 <iyzsong@gmail.com> Thomas Danckaert
2016-09-28gnu: linux-libre-beagle-bone-black: Remove kernel variant....linux-libre-beagle-bone-black is misslabeled. This kernel variant is for the original beagle board. * gnu/packages/linux.scm (linux-libre-beagle-bone-black): Remove. David Craven
2016-09-28gnu: make-linux-libre: Install device tree files....* gnu/packages/linux.scm (make-linux-libre): Install device tree files. David Craven
2016-09-28gnu: %default-extra-linux-options: Remove redundant options....* gnu/packages/linux.scm (%default-extra-linux-options): Remove redundant options. David Craven
2016-09-28gnu: Add sdcc....* gnu/packages/sdcc.scm (sdcc): New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. David Craven
2016-09-28gnu: Add picocom....* gnu/packages/terminals.scm (picocom): New variable. David Craven
2016-09-28gnu: opendht: Propagate msgpack....* gnu/packages/crypto.scm (opendht)[inputs]: Remove msgpack. [propagated-inputs]: Add it. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Lukas Gradl
2016-09-28gnu: telephony: Add 'license:' prefix....* gnu/packages/telephony.scm (commoncpp) [license]: Add prefix. (ucommon) [license]: Add prefix. (ccrtp) [license]: Add prefix. (osip) [license]: Add prefix. (exosip) [license]: Add prefix. (sipwitch) [license]: Add prefix. (libsrtp) [license]: Add prefix. (libiax2) [license]: Add prefix. (seren) [license]: Add prefix. (pjproject-sfl) [license]: Add prefix. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Lukas Gradl
2016-09-28gnu: Add gsm....* gnu/packages/audio.scm (gsm): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Lukas Gradl
2016-09-28gnu: Add dbus-c++....* gnu/packages/glib.scm (dbus-c++): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Lukas Gradl
2016-09-27gnu: libressl: Update to 2.5.0....* gnu/packages/tls.scm (libressl): Update to 2.5.0. Leo Famulari
2016-09-28gnu: encfs: Update to 1.9.1....* gnu/packages/crypto.scm (encfs): Update to 1.9.1. Tobias Geerinckx-Rice
2016-09-28gnu: btrfs-progs: Update to 4.7.3....* gnu/packages/linux.scm (btrfs-progs): Update to 4.7.3. Tobias Geerinckx-Rice
2016-09-28gnu: zip: Use 'modify-phases'....* gnu/packages/zip.scm (zip)[arguments]: Use 'modify-phases'. Tobias Geerinckx-Rice
2016-09-27gnu: isc-dhcp: Update bundled bind to 9.9.9-P3 [fixes CVE-2016-2776]....* gnu/packages/admin.scm (isc-dhcp)[inputs]: Update bundled bind to 9.9.9-P3. Leo Famulari
2016-09-27gnu: bind: Update to 9.10.4-P3 [fixes CVE-2016-2776]....* gnu/packages/dns.scm (bind): Update to 9.10.4-P3. Leo Famulari
2016-09-27gnu: Add python-q....* gnu/packages/python.scm (python-q, python2-q): New variables. Signed-off-by: Leo Famulari <leo@famulari.name> Stefan Reichoer
2016-09-27gnu: expat: Fix regression caused by fix for CVE-2016-0718....* gnu/packages/xml.scm (expat)[replacement]: New field. (expat/fixed): New variable. * gnu/packages/patches/expat-CVE-2016-0718-fix-regression.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Leo Famulari <leo@famulari.name> Leo Famulari
2016-09-27gnu: Add gctp....* gnu/packages/maths.scm (gctp): New variable. Signed-off-by: Leo Famulari <leo@famulari.name> Thomas Danckaert
2016-09-27gnu: Add gloox....* gnu/packages/messaging.scm (gloox): New variable. Signed-off-by: Leo Famulari <leo@famulari.name> ng0
2016-09-27gnu: femtolisp: Don't build on mips64el or armhf....* gnu/packages/lisp.scm (femtolisp)[supported-systems]: New field, remove support for mips64el and armhf. Signed-off-by: Leo Famulari <leo@famulari.name> ng0
2016-09-27gnu: Add gobby....* gnu/packages/gobby.scm (gobby): New variable. Andy Wingo
2016-09-27gnu: Add obby....* gnu/packages/gobby.scm (obby): New variable. Andy Wingo
2016-09-27gnu: Add libnet6....* gnu/packages/gobby.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add new file. Andy Wingo
2016-09-27gnu: Add libxml++-2....* gnu/packages/gnome.scm (libxml++-2): New variable. Andy Wingo
2016-09-27gnu: aria2: Update to 1.27.1....* gnu/packages/bittorrent.scm (aria2): Update to 1.27.1. Efraim Flashner
2016-09-27gnu: python-plastid: Update to 1.4.6....* gnu/packages/bioinformatics.scm (python-plastid, python2-plastid): Update to 1.4.6. [propagated-inputs]: Add python-termcolor. Ben J Woodcroft
2016-09-27gnu: Add python-termcolor....* gnu/packages/python.scm (python-termcolor, python2-termcolor): New variables. Ben J Woodcroft
2016-09-27gnu: python-pysam: Enable tests....* gnu/packages/bioinformatics.scm (python-pysam)[source]: Change from PyPi to source archive due to missing test data. [arguments]: Add check phase after install. [native-inputs]: Add python-nose, samtools and bcftools. Marius Bakke
2016-09-27gnu: python-pysam: Delete bundled htslib....* gnu/packages/bioinformatics.scm (python-pysam)[source]: Add snippet to delete htslib. [arguments]: Add htslib flags in 'set-flags phase. [propagated-inputs]: New field. Add htslib. Marius Bakke
2016-09-27gnu: python-pysam: Use 'modify-phases'....* gnu/packages/bioinformatics.scm (python-pysam)[arguments]: Use 'modify-phases'. Marius Bakke
2016-09-27gnu: Add bcftools....* gnu/packages/bioinformatics.scm (bcftools): New variable. Marius Bakke
2016-09-27gnu: python2-pbcore: Update to 1.2.10....* gnu/packages/bioinformatics.scm (python2-pbcore): Update to 1.2.10. [propagated-inputs]: New field. Add python2-pyxb. Marius Bakke
2016-09-27gnu: Add python-pyxb....* gnu/packages/xml.scm (python-pyxb, python2-pyxb): New variables. Marius Bakke
2016-09-27gnu: python-pysam: Update to 0.9.1.4....* gnu/packages/bioinformatics.scm (python-pysam, python2-pysam): Update to 0.9.1.4. Marius Bakke
2016-09-26gnu: openssl-next: Update to 1.1.0b [fixes CVE-2016-6309]....* gnu/packages/tls.scm (openssl-next): Update to 1.1.0b. Leo Famulari
2016-09-26gnu: openssl: Update replacement to 1.0.2j [fixes CVE-2016-7052]....* gnu/packages/tls.scm (openssl): Update replacement to 1.0.2j. (openssl-1.0.2i): Replace with... (openssl-1.0.2j): ... new variable. Leo Famulari
2016-09-26gnu: libftdi: Propagate the libusb input....* gnu/packages/libftdi.scm (libftdi): Change libusb from an input to a propagated-input. Signed-off-by: Leo Famulari <leo@famulari.name> Danny Milosavljevic
2016-09-26gnu: ncbi-vdb: Only build on i686 and x86_64....* gnu/packages/bioinformatics.scm (ncbi-vdb)[supported-systems]: Only build on i686 and x86_64. [arguments]: Add mandatory "-msse2" flag to CFLAGS. Ricardo Wurmus
2016-09-26gnu: ghc-pandoc: Update to 1.17.2....* gnu/packages/haskell.scm (ghc-pandoc): Update to 1.17.2. Ricardo Wurmus
2016-09-26gnu: ghc-texmath: Update to 0.8.6.5....* gnu/packages/haskell.scm (ghc-texmath): Update to 0.8.6.5. Ricardo Wurmus
2016-09-26gnu: ghc-cmark: Update to 0.5.3.1....* gnu/packages/haskell.scm (ghc-cmark): Update to 0.5.3.1. Ricardo Wurmus
2016-09-26gnu: ghc-highlighting-kate: Update to 0.6.3....* gnu/packages/haskell.scm (ghc-highlighting-kate): Update to 0.6.3. Ricardo Wurmus
2016-09-26gnu: ghc-pandoc-types: Update to 1.16.1.1....* gnu/packages/haskell.scm (ghc-pandoc-types): Update to 1.16.1.1. Ricardo Wurmus