Age | Commit message (Collapse) | Author |
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* gnu/packages/bioinformatics.scm (r-hdf5array): Update to 1.14.3.
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* gnu/packages/bioinformatics.scm (r-rsamtools): Update to 2.2.3.
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* gnu/packages/bioinformatics.scm (r-edger): Update to 3.28.1.
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* gnu/packages/package-management.scm (gwl): Update to 0.2.1.
[arguments]: Add phase "fix-tests".
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* gnu/packages/statistics.scm (r-nloptr): Update to 1.2.2.
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* gnu/packages/statistics.scm (r-gplots): Update to 3.0.3.
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* gnu/packages/statistics.scm (r-mvtnorm): Update to 1.1-0.
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* gnu/packages/statistics.scm (r-rlang): Update to 0.4.5.
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* gnu/packages/statistics.scm (r-digest): Update to 0.6.25.
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* gnu/packages/statistics.scm (r-nnet): Update to 7.3-13.
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* gnu/packages/bioinformatics.scm (r-seurat): Update to 3.1.4.
[propagated-inputs]: Add r-patchwork.
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* gnu/packages/cran.scm (r-wgcna): Update to 1.69.
[propagated-inputs]: Remove r-robust.
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* gnu/packages/cran.scm (r-quanteda): Update to 2.0.0.
[propagated-inputs]: Remove r-lubridate, r-rspectra, and r-spacyr; add
r-jsonlite.
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* gnu/packages/cran.scm (r-gdina): Update to 2.7.9.
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* gnu/packages/cran.scm (r-subplex): Update to 1.6.
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* gnu/packages/cran.scm (r-rpf): Update to 1.0.3.
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* gnu/packages/cran.scm (r-dalex): Update to 1.0.1.
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* gnu/packages/cran.scm (r-styler): Update to 1.3.2.
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* gnu/packages/cran.scm (r-gridgraphics): Update to 0.5-0.
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* gnu/packages/cran.scm (r-protviz): Update to 0.6.3.
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* gnu/packages/cran.scm (r-rvcheck): Update to 0.1.8.
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* gnu/packages/cran.scm (r-rcppannoy): Update to 0.0.15.
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* gnu/packages/cran.scm (r-mvabund): Update to 4.1.3.
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* gnu/packages/cran.scm (r-manipulatewidget): Update to 0.10.1.
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* gnu/packages/cran.scm (r-effectsize): Update to 0.2.0.
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* gnu/packages/cran.scm (r-factominer): Update to 2.3.
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* gnu/packages/cran.scm (r-tinytex): Update to 0.20.
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* gnu/packages/cran.scm (r-uuid): Update to 0.1-4.
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* gnu/packages/cran.scm (r-broom): Update to 0.5.5.
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* gnu/packages/cran.scm (r-cli): Update to 2.0.2.
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* gnu/packages/cran.scm (r-sp): Update to 1.4-1.
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* gnu/packages/cran.scm (r-dendextend): Update to 1.13.4.
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* gnu/packages/cran.scm (r-modelr): Update to 0.1.6.
[propagated-inputs]: Add r-tidyselect.
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* gnu/packages/cran.scm (r-matrix-utils): Update to 0.9.8.
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* gnu/packages/bioconductor.scm (r-gkmsvm): Update to 0.80.0.
[propagated-inputs]: Remove r-biocgenerics, r-biostrings, r-genomeinfodb,
r-iranges, r-rtracklayer, and r-s4vectors.
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* gnu/packages/emacs-xyz.scm (emacs-relint): Update to 1.14.
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* gnu/packages/emacs-xyz.scm (emacs-xr): Update to 1.16.
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Without this patch qemu-minimal-2.10 is not really minimal; it depends on
cups, ffmpeg, ghostscript, gstreamer, gtk, spice, ...
* gnu/packages/virtualization.scm (qemu-minimal-2.10)
[native-inputs]: Inherit from QEMU-MINIMAL instead of QEMU.
[inputs]: Likewise.
Signed-off-by: Jakub Kądziołka <kuba@kadziolka.net>
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* gnu/packages/guile-xyz.scm (guile3.0-squee): Switch inputs to native-inputs.
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* gnu/packages/guile-xyz.scm (guile3.0-email): New variable.
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* gnu/packages/guile-xyz.scm (guile3.0-squee): New variable.
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* gnu/packages/python-xyz.scm (python-construct)[home-page]: Use HTTPS.
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* gnu/packages/games.scm (warzone2100)[home-page]: Use HTTPS.
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* gnu/packages/sphinx.scm (python-sphinx)[home-page]: Use HTTPS.
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* gnu/packages/bdw-gc.scm (libgc)[home-page]: Use HTTPS.
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* gnu/packages/audio.scm (python-pyalsaaudio)[home-page]: Use HTTPS.
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* gnu/packages/ruby.scm (ruby-markaby)[home-page]: Use HTTPS.
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* gnu/packages/python-xyz.scm (python-h5py)[home-page]: Use HTTPS.
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* gnu/packages/wordnet.scm (wordnet)[home-page]: Use HTTPS.
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* gnu/packages/tls.scm (dehydrated)[arguments]: Install compressed man
page and other basic documentation.
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