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2023-03-15gnu: r-annotationdbi: Update to 1.60.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-annotationdbi): Update to 1.60.2.
2023-03-15gnu: r-infercnv: Update to 1.14.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-infercnv): Update to 1.14.2.
2023-03-15gnu: r-bandits: Update to 1.14.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bandits): Update to 1.14.2.
2023-03-15gnu: r-bambu: Update to 3.0.8.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bambu): Update to 3.0.8.
2023-03-15gnu: r-atena: Update to 1.4.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-atena): Update to 1.4.1. [propagated-inputs]: Add r-matrixstats.
2023-03-15gnu: r-alpsnmr: Update to 4.0.4.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-alpsnmr): Update to 4.0.4. [propagated-inputs]: Add r-cli.
2023-03-15gnu: r-biocpkgtools: Update to 1.16.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biocpkgtools): Update to 1.16.1. [source]: Add snippet to remove bundled minified JavaScript files. [native-inputs]: Add esbuild, js-bootstrap, js-d3, js-jquery, and js-underscore. [arguments]: Add build phase 'process-javascript.
2023-03-15gnu: r-mast: Update to 1.24.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-mast): Update to 1.24.1. [source]: Delete minified JavaScript. [arguments]: Add build phase 'process-javascript. [native-inputs]: Add esbuild and js-jquery-sticky-kit.
2023-03-15gnu: sbcl-nclasses: Update to 0.3.0.Pierre Neidhardt
* gnu/packages/lisp-xyz.scm (sbcl-nclasses): Update to 0.3.0.
2023-03-15gnu: Add sbcl-stumpwm-hostname.jgart
* gnu/packages/wm.scm (sbcl-stumpwm-hostname): New variable. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2023-03-15gnu: sbcl-mcclim: Update project urls.jgart
* gnu/packages/lisp-xyz.scm (sbcl-mcclim)[source]: Update source url. [home-page]: Update project home page. Signed-off-by: Andreas Enge <andreas@enge.fr>
2023-03-15gnu: reprotest: Update to 0.7.23.Vagrant Cascadian
* gnu/packages/diffoscope.scm (reprotest): Update to 0.7.23. [phases] Update adjust-locales.
2023-03-15gnu: diffoscope: Update to 238.Vagrant Cascadian
* gnu/packages/diffoscope.scm (diffoscope): Update to 238. [native-inputs]: Switch from poppler to poppler-next.
2023-03-15gnu: emacs-org-modern: Update to 0.9.Andrew Tropin
* gnu/packages/emacs-xyz.scm (emacs-org-modern): Update to 0.9.
2023-03-14gnu: r-rhandsontable: Move to (gnu packages cran).Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-rhandsontable): Move this variable from here... * gnu/packages/cran.scm (r-rhandsontable): ...to here.
2023-03-14gnu: Add r-premessa.Navid Afkhami
* gnu/packages/bioinformatics.scm (r-premessa): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net>.
2023-03-14gnu: icecat: Update to 102.9.0-guix0-preview1 [security fixes].Mark H Weaver
Includes fixes for CVE-2023-25751, CVE-2023-25752, CVE-2023-28162, CVE-2023-28163, CVE-2023-28164, and CVE-2023-28176. * gnu/packages/gnuzilla.scm (%icecat-base-version, %icecat-build-id): Update. (icecat-source): Update gnuzilla commit, base version, and hashes.
2023-03-14gnu: Add r-rhandsontable.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-rhandsontable): New variable. Co-authored-by: Navid Afkhami <navid.afkhami@mdc-berlin.de>
2023-03-14gnu: r-tidyverse: Update to 2.0.0.Navid Afkhami
* gnu/packages/cran.scm (r-tidyverse): Update to 2.0.0. [propagated-inputs]: Remove r-crayon; add r-conflicted and r-ragg.
2023-03-14gnu: pcb-rnd: Update to 3.1.0.Ricardo Wurmus
* gnu/packages/engineering.scm (pcb-rnd): Update to 3.1.0. [inputs]: Add librnd. [arguments]: Use gexp; set LIBRND_PREFIX.
2023-03-14gnu: Add librnd.Ricardo Wurmus
* gnu/packages/engineering.scm (librnd): New variable.
2023-03-14gnu: pcb: Remove eudev.Ricardo Wurmus
* gnu/packages/engineering.scm (pcb)[inputs]: Remove eudev as it is no longer necessary to add it for mesa.
2023-03-14gnu: pcb: Drop input labels.Ricardo Wurmus
* gnu/packages/engineering.scm (pcb)[inputs, native-inputs]: Remove package labels.
2023-03-14gnu: pcb: Update to 4.3.0.Ricardo Wurmus
* gnu/packages/engineering.scm (pcb): Update to 4.3.0. [arguments]: Remove obsolete build phases.
2023-03-14gnu: pcb: Use gexp.Ricardo Wurmus
* gnu/packages/engineering.scm (pcb)[arguments]: Use gexp and drop trailing #T from build phases.
2023-03-14gnu: lepton-eda: Adjust format.Ricardo Wurmus
* gnu/packages/engineering.scm (lepton-eda): Move arguments above inputs, and reformat source field.
2023-03-14gnu: lepton-eda: Use gexp for arguments.Ricardo Wurmus
* gnu/packages/engineering.scm (lepton-eda)[arguments]: Use gexp.
2023-03-14gnu: lepton-eda: Drop input labels.Ricardo Wurmus
* gnu/packages/engineering.scm (lepton-eda)[native-inputs, inputs]: Do not use redundant package labels.
2023-03-14gnu: guix-build-coordinator: Update to 0-73.7c1eedf.Christopher Baines
* gnu/packages/package-management.scm (guix-build-coordinator): Update to 0-73.7c1eedf.
2023-03-14gnu: mruby: Update to 3.2.0.Yovan Naumovski
* gnu/packages/ruby.scm (mruby): Update to 3.2.0. [arguments]: Remove unnecessary substitutions in the 'disable-broken-tests phase. [description]: Update. Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-03-14gnu: autokey: Update to 0.96.0.Bruno Victal
* gnu/packages/python-xyz.scm (autokey): Update to 0.96.0. [source]: Patch tests. [arguments]: Enable tests. Prefer PATH over substitute* in phase 'fix-paths. Add phase 'setup-env-vars. Rename 'wrap-autokey-gi to 'wrap-autokey and set PATH. [build-system]: Switch to pyproject-build-system. [native-inputs]: Add python-pytest, python-pytest-cov and python-pyhamcrest. Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-03-14gnu: tesseract-ocr: Update to 5.3.0.kiasoc5
* gnu/packages/ocr.scm (tesseract-ocr): Update to 5.3.0. Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-03-14gnu: gimagereader: Update to 3.4.1.kiasoc5
* gnu/packages/ocr.scm (gimagereader): Update to 3.4.1. [inputs]: Remove quazip-0; add quazip. Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-03-14gnu: phantomsocks: Update to 0.0.0-20230223180716-34d21f24a9eb.Hilton Chain
* gnu/packages/networking.scm (phantomsocks): Update to 0.0.0-20230223180716-34d21f24a9eb. Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-03-14gnu: rng-tools: Update to 6.16.Bruno Victal
* gnu/packages/linux.scm (rng-tools): Update to 6.16. [arguments]: Disable qrypt. [inputs]: Add libcap. Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-03-14gnu: rng-tools: Do not build randstat binary.Bruno Victal
This trivial binary is rarely useful. * gnu/local.mk (dist_patch_DATA): Register patch. * gnu/packages/patches/rng-tools-revert-build-randstat.patch: New file. * gnu/packages/linux.scm (rng-tools)[origin]: Add patch. Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-03-14gnu: rng-tools: Rewrite using gexps.Bruno Victal
* gnu/packages/linux.scm (rng-tools)[arguments]: Rewrite using gexps. Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-03-14gnu: splash: Update to 3.7.2.Sharlatan Hellseher
* gnu/packages/astronomy.scm (splash): Update to 3.7.2. Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-03-14gnu: clipmenu: Improve package style.EuAndreh via Guix-patches via
* gnu/packages/xdisorg.scm (clipmenu)[arguments]: Use g-expressions; remove trailing #t from phases.
2023-03-14gnu: clipmenu: Update to 6.2.0.EuAndreh via Guix-patches via
* gnu/packages/xdisorg.scm (clipmenu): Update to 6.2.0. [arguments]: Install two additional commands.
2023-03-13gnu: go-golang-zx2c4-com-wireguard: Update to 0.0.20211016.Felix Lechner
Newer releases of this package are available but require newer versions of Golang, especially around networking. * gnu/packages/golang.scm (go-golang-zx2c4-com-wireguard): Update to 0.0.20211016. Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-03-13gnu: python-graph-tool: Update to 2.46.Ale Abdo
* gnu/packages/graph.scm (python-graph-tool): Update to 2.46. Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-03-13gnu: python-bibtexparser: Update to 1.4.0.Amade Nemes
* gnu/packages/python-xyz.scm (python-bibtexparser): Update to 1.4.0. Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-03-13gnu: nar-herder: Update to 0-18.659543c.Christopher Baines
* gnu/packages/package-management.scm (nar-herder): Update to 0-18.659543c. [source]: Switch to Savannah.
2023-03-13gnu: guix-build-coordinator: Update to 0-72.4d8ee69.Christopher Baines
* gnu/packages/package-management.scm (guix-build-coordinator): Update to 0-72.4d8ee69. [source]: Switch to Savannah.
2023-03-13gnu: pumpa: Update upsream URL.Sarthak Shah
Fixes <http://issues.guix.gnu.org/issue/52257>. * gnu/packages/pumio.scm (pumpa)[source]: Replace pumpa origin. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-03-13gnu: Add font-iosevka-ss09.Paul A. Patience
* gnu/packages/fonts.scm (font-iosevka-ss09): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-03-13gnu: Add font-iosevka-ss08.Paul A. Patience
* gnu/packages/fonts.scm (font-iosevka-ss08): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-03-13gnu: font-iosevka: Update to 20.0.0.Paul A. Patience
* gnu/packages/fonts.scm (font-iosevka): Update to 20.0.0. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-03-13gnu: rnp: Improve package style.Jack Hill
* gnu/package/openpgp.scm (rnp)[phases]{fixes}: Rename fixes to patch-tests, use search-input-file, and remove trailing #t. {check}: Respect tests?. [native-inputs]: Remove labels. [home-page]: Update URL. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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