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2023-07-04gnu: icecat: Update to 102.13.0-guix0-preview1 [security fixes].Mark H Weaver
Includes fixes for CVE-2023-37201, CVE-2023-37202, CVE-2023-37207, CVE-2023-37208, and CVE-2023-37211. * gnu/packages/gnuzilla.scm (%icecat-base-version, %icecat-build-id): Update. (icecat-source): Update gnuzilla commit, base version, and hashes.
2023-07-04gnu: linux-libre 6.1: Update to 6.1.37.Leo Famulari
* gnu/packages/linux.scm (linux-libre-6.1-version): Update to 6.1.37. (linux-libre-6.1-pristine-source): Update hash.
2023-07-04gnu: linux-libre: Update to 6.3.11.Leo Famulari
* gnu/packages/linux.scm (linux-libre-6.3-version): Update to 6.3.11. (linux-libre-6.3-pristine-source): Update hash.
2023-07-04gnu: darktable: Update to 4.4.1.John Kehayias
* gnu/packages/photo.scm (darktable): Update to 4.4.1. [phases]{fix-missing-include}: Remove phase as this has been fixed upstream.
2023-07-04gnu: Add cl-postgres+local-time.Roman Scherer
The local-time extension for cl-postgres has to be put in a separate package to solve a dependency cycle between local-time and postmodern. * gnu/packages/lisp-xyz.scm (sbcl-local-time)[arguments]: Add 'delete-local-time' phase. (sbcl-cl-postgres+local-time): New variable. Co-authored-by: Guillaume Le Vaillant <glv@posteo.net>
2023-07-04gnu: p2pool: Update to 3.5.Guillaume Le Vaillant
* gnu/packages/finance.scm (p2pool): Update to 3.5.
2023-07-04gnu: xmrig: Update to 6.20.0.Ahmad Draidi
* gnu/packages/finance.scm (xmrig): Update to 6.20.0. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2023-07-03gnu: Add python-cesium.Navid Afkhami
* gnu/packages/python-xyz.scm (python-cesium): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2023-07-03gnu: Add python-gatspy.Navid Afkhami
* gnu/packages/bioinformatics.scm (python-gatspy): New variable.
2023-07-03gnu: Add python-astroml.Ricardo Wurmus
* gnu/packages/astronomy.scm (python-astroml): New variable.
2023-07-03gnu: cutadapt: Update to 4.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (cutadapt): Update to 4.0. [build-system]: Use pyproject-build-system. [arguments]: Disable a single test; remove 'always-cythonize build phase; add phase 'fix-test. [native-inputs]: Add python-pytest-mock and python-pytest-timeout.
2023-07-03gnu: python-dnaio: Update to 0.10.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-dnaio): Update to 0.10.0. [arguments]: Disable tests, because they don't exist. [build-system]: Use pyproject-build-system. [native-inputs]: Add python-setuptools-scm; move python-xopen from here... [propagated-inputs]: ...to here.
2023-07-03gnu: python-xopen: Update to 1.7.0.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-xopen): Update to 1.7.0. [build-system]: Use pyproject-build-system. [propagated-inputs]: Add pigz, python-isal, and python-typing-extensions; move python-setuptools-scm from here... [native-inputs]: ...to here; add python-pytest and python-pytest-timeout. [description]: Reflow.
2023-07-03gnu: python-isal: Update to 1.1.0.Ricardo Wurmus
* gnu/packages/python-compression.scm (python-isal): Update to 1.1.0. [build-system]: Use pyproject-build-system.
2023-07-03gnu: Add r-dtmm.Navid Afkhami
* gnu/packages/bioinformatics.scm (r-dtmm): New variable.
2023-07-03gnu: Add r-fsa.Navid Afkhami
* gnu/packages/cran.scm (r-fsa): New variable.
2023-07-03gnu: Add r-dicekriging.Navid Afkhami
* gnu/packages/cran.scm (r-dicekriging): New variable.
2023-07-03gnu: Add r-cellid.Navid Afkhami
* gnu/packages/bioconductor.scm (r-cellid): New variable.
2023-07-03gnu: Add r-dunn-test.Navid Afkhami
* gnu/packages/cran.scm (r-dunn-test): New variable.
2023-07-03gnu: Add r-ggfittext.Navid Afkhami
* gnu/packages/cran.scm (r-ggfittext): New variable.
2023-07-03gnu: Add r-tidyft.Navid Afkhami
* gnu/packages/cran.scm (r-tidyft): New variable.
2023-07-03gnu: Add r-emoa.Navid Afkhami
* gnu/packages/cran.scm (r-emoa): New variable.
2023-07-03gnu: Add r-mlrmbo.Navid Afkhami
* gnu/packages/cran.scm (r-mlrmbo): New variable.
2023-07-03gnu: Add r-mlr.Navid Afkhami
* gnu/packages/cran.scm (r-mlr): New variable.
2023-07-03gnu: Add r-parallelmap.Navid Afkhami
* gnu/packages/cran.scm (r-parallelmap): New variable.
2023-07-03gnu: Add r-smoof.Navid Afkhami
* gnu/packages/cran.scm (r-smoof): New variable.
2023-07-03gnu: Add r-paramhelpers.Navid Afkhami
* gnu/packages/cran.scm (r-paramhelpers): New variable.
2023-07-03gnu: r-v8: Update to 4.3.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-v8): Update to 4.3.1. [properties]: Let updater ignore libnode.
2023-07-03gnu: jbr: Make big cursors work.Danny Milosavljevic
* gnu/packages/patches/jbr-17-xcursor-no-dynamic.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/java.scm (jbr17)[source]<#:patches>: Add it.
2023-07-03gnu: Add jbr.Danny Milosavljevic
* gnu/packages/java.scm (jbr17): New variable.
2023-07-02gnu: nextcloud-client: Update to 3.8.2.Hartmut Goebel
* gnu/packages/sync.scm (nextcloud-client): Update to 3.8.2. [snippets]: Keep 3rd-party files from kirigami. Remove more references of deleted 3rd parties. Adjust substitute for new code. [configure-flags]: Disable building the updater. [phases]<patch-cmake>: Adjust substitute for new code. <check>: Use custom phase to disable a failing test. [inputs]: Add dbus and karchive. [native-inputs]: Add librsvg-for-system.
2023-07-02gnu: podman: Fix path to helper binaries.Hartmut Goebel
'quadlet' and 'rootlessport' coming with podman reside in "#$output/libexex/podman", not in "#$output/bin". Thus search this first. * gnu/packages/containers.scm (podman)[phases]<fix-hardcoded-paths>: Change subsitution for "/usr/local/libexec/podman", add substitution for "/usr/local/lib/podman".
2023-07-02gnu: llvm: make clang-make-toolchain publicCory Fields
Matches gcc-make-toolchain. Allow for llvm build to be patched. * gnu/packages/llvm.scm: make clang-make-toolchain public Signed-off-by: Carl Dong <contact@carldong.me>
2023-07-01gnu: python-pyelftools: Update to 0.29.Vagrant Cascadian
* gnu/packages/python-xyz.scm (python-pyelftools): Update to 0.29.
2023-07-01gnu: Add python-tree-sitter.Nicolas Graves
* gnu/packages/tree-sitter.scm (python-tree-sitter): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Reviewed-by: Jean-Pierre De Jesus DIAZ <jean@foundationdevices.com>
2023-07-01gnu: Add miniflux.Hilton Chain
* gnu/packages/web.scm (miniflux): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-07-01gnu: Add go-github-com-rylans-getlang.Hilton Chain
* gnu/packages/golang.scm (go-github-com-rylans-getlang): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-07-01gnu: Add go-github-com-matrix-org-gomatrix.Hilton Chain
* gnu/packages/golang.scm (go-github-com-matrix-org-gomatrix): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-07-01gnu: Add go-github-com-go-telegram-bot-api-telegram-bot-api.Hilton Chain
* gnu/packages/golang.scm (go-github-com-go-telegram-bot-api-telegram-bot-api): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-07-01gnu: Add go-github-com-technoweenie-multipartstreamer.Hilton Chain
* gnu/packages/golang.scm (go-github-com-technoweenie-multipartstreamer): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-07-01gnu: Add go-github-com-tdewolff-minify-v2.Hilton Chain
* gnu/packages/golang.scm (go-github-com-tdewolff-minify-v2): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-07-01gnu: Add go-github-com-tdewolff-parse-v2.Hilton Chain
* gnu/packages/golang.scm (go-github-com-tdewolff-parse-v2): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-07-01gnu: Add go-github-com-tdewolff-test.Hilton Chain
* gnu/packages/golang.scm (go-github-com-tdewolff-test): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-07-01gnu: Add go-github-com-coreos-go-oidc.Hilton Chain
* gnu/packages/golang.scm (go-github-com-coreos-go-oidc): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-07-01gnu: Add go-gopkg-in-square-go-jose-v2.Hilton Chain
* gnu/packages/golang.scm (go-gopkg-in-square-go-jose-v2): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-07-01gnu: Add go-github-com-pquerna-cachecontrol.Hilton Chain
* gnu/packages/golang.scm (go-github-com-pquerna-cachecontrol): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-07-01gnu: mympd: Update to 10.3.3.Bruno Victal
* gnu/packages/mpd.scm (mympd): Update to 10.3.3. <arguments>: Honor 'strip phase. <native-inputs>: Add missing pkg-config. <description>: Reword it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-07-01gnu: cabextract: Update to 1.11.Greg Hogan
* gnu/packages/compression.scm (cabextract): Update to 1.11. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-07-01gnu: libmspack: Update to 0.11.Greg Hogan
* gnu/packages/compression.scm (libmspack): Update to 0.11. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-07-01gnu: Remove duplicate import.Feng Shu
* gnu/packages/wm.scm: Remove duplicate (gnu packages gettext) import. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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