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2016-05-16gnu: r-biostrings: Update to 2.40.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.40.0.
2016-05-16gnu: r-biocparallel: Update to 1.6.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.6.0.
2016-05-16gnu: r-biomart: Update to 2.28.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.28.0.
2016-05-16gnu: r-annotationdbi: Update to 1.34.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.34.0.
2016-05-16gnu: r-biobase: Update to 2.32.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-biobase): Update to 2.32.0.
2016-05-16gnu: r-genomicranges: Update to 1.24.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.24.0.
2016-05-16gnu: r-xvector: Update to 0.12.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-xvector): Update to 0.12.0.
2016-05-16gnu: r-variantannotation: Update to 1.18.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.18.0.
2016-05-16gnu: r-genomeinfodb: Update to 1.8.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.8.0.
2016-05-16gnu: r-iranges: Update to 2.6.0.Ricardo Wurmus
* gnu/packages/bioinformatics (r-iranges): Update to 2.6.0.
2016-05-16gnu: r-s4vectors: Update to 0.10.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.10.0.
2016-05-16gnu: r-dnacopy: Update to 1.46.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-dnacopy): Update to 1.46.0.
2016-05-16gnu: r-biocgenerics: Update to 0.18.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-biocgenerics): Update to 0.18.0.
2016-05-16gnu: imagemagick: Update to 6.9.4-1.Leo Famulari
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.4-1.
2016-05-16gnu: libgit2: Update to 0.24.1.Efraim Flashner
* gnu/packages/version-control.scm (libgit2): Update to 0.24.1.
2016-05-16gnu: tmux: Update to 2.2.Efraim Flashner
* gnu/packages/tmux.scm (tmux): Update to 2.2.
2016-05-16gnu: Add ledger.Alex Griffin
* gnu/packages/finance.scm (ledger): New variable. Co-authored-by: Alex Kost <alezost@gmail.com>
2016-05-16gnu: Add utfcpp.Alex Griffin
* gnu/packages/textutils.scm (utfcpp): New variable. Signed-off-by: Alex Kost <alezost@gmail.com>
2016-05-16gnu: asymptote: Install Emacs data.Nicolas Goaziou
* gnu/packages/plotutils.scm (asymptote)[arguments]: Add a phase to install Emacs-Lisp files in an appropriate place. Signed-off-by: Alex Kost <alezost@gmail.com>
2016-05-16gnu: mu: Update to 0.9.16.Alex Kost
* gnu/packages/mail.scm (%mu-gtester-patch): Remove. (mu): Update to 0.9.16. [source]: Remove 'patches'.
2016-05-16gnu: mu: Install emacs autoloads.Alex Kost
* gnu/packages/mail.scm (mu)[arguments]: Add 'install-emacs-autoloads' phase. Use appropriate modules and imported-modules.
2016-05-16gnu: mu: Install emacs files in a proper place.Alex Kost
* gnu/packages/mail.scm (mu)[arguments]: Add 'patch-configure.ac' phase to avoid adding "mu4e" sub-directory to 'lispdir' variable.
2016-05-16gnu: mu: Use 'modify-phases'.Alex Kost
* gnu/packages/mail.scm (mu): Use 'modify-phases'.
2016-05-16gnu: python-pandas: Update to 0.18.1.Efraim Flashner
* gnu/packages/python.scm (python-pandas): Update to 0.18.1. [native-inputs]: Remove python-setuptools. [properties]: Define python2-pandas. (python2-pandas)[native-inputs]: Add python2-setuptools. * gnu/packages/patches/python-pandas-fix-tslib-test-failure.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2016-05-16gnu:: java-swt: Use ant-build-system.Ricardo Wurmus
* gnu/packages/java.scm (java-swt): Use ant-build-system. [native-inputs]: Remove JDK.
2016-05-16gnu: Add SBC.Ricardo Wurmus
* gnu/packages/linux.scm (sbc): New variable.
2016-05-16gnu: rapicorn: Fix tests.Ricardo Wurmus
* gnu/packages/graphics.scm (rapicorn)[arguments]: Add build phases "fix-tests" and "pre-check". Generalize "replace-/bin/ls" phase to "replace-fhs-paths". [propagated-inputs]: Add python2-enum34. [native-inputs]: Add xorg-server.
2016-05-16gnu: hugs: Update urls.Efraim Flashner
* gnu/packages/hugs.scm (hugs)[source]: Update url. [home-page]: Use https.
2016-05-16gnu: hmmer: Update urls.Efraim Flashner
* gnu/packages/bioinformatics.scm (hmmer)[source]: Project has moved to eddylab, with their downloads. [home-page]: Update to new homepage.
2016-05-16gnu: guile-irregex: Update to 0.9.4.Efraim Flashner
* gnu/packages/guile.scm (guile-irregex): Update to 0.9.4.
2016-05-16gnu: gkrellm: Update urls.Efraim Flashner
* gnu/packages/gkrellm.scm (gkrellm)[source]: Download from new site. [home-page]: Update to new site.
2016-05-16gnu: giblib: Add mirror for source.Efraim Flashner
* gnu/packages/image.scm (giblib)[source]: Add a download mirror from slackbuilds.
2016-05-16gnu: geeqie: Update source location.Efraim Flashner
* gnu/packages/geeqie.scm (geeqie)[source]: Download from Github. [home-page]: Project has moved to new url.
2016-05-16gnu: fvwm: Update to 2.6.6.Efraim Flashner
* gnu/packages/fvwm.scm (fvwm): Update to 2.6.6. [source]: Change download location to Github.
2016-05-16gnu: gmsh: Add missing inputs.Efraim Flashner
* gnu/packages/maths.scm (gmsh)[inputs]: Add fontconfig, libxft.
2016-05-16gnu: python-cryptography, python-cryptography-vectors: Update to 1.3.2.Leo Famulari
* gnu/packages/python.scm (python-cryptography): Update to 1.3.2. (python-cryptography-vectors): Update to 1.3.2.
2016-05-16gnu: unixodbc: Update to 2.3.4.Efraim Flashner
* gnu/packages/databases.scm (unixodbc): Update to 2.3.4.
2016-05-16gnu: tdb: Update to 1.3.9.Efraim Flashner
* gnu/packages/databases.scm (tdb): Update to 1.3.9.
2016-05-16gnu: postgresql: Update to 9.5.3.Efraim Flashner
* gnu/packages/databases.scm (postgresql): Update to 9.5.3.
2016-05-16gnu: wireless-regdb: Update to 2016.05.02.Efraim Flashner
* gnu/packages/linux.scm (wireless-regdb): Update to 2016.05.02.
2016-05-16gnu: iw: Update to 4.3.Efraim Flashner
* gnu/packages/linux.scm (iw): Update to 4.3. [source]: Use kernel mirror. [home-page]: Update to new home-page.
2016-05-16gnu: mdadm: Update to 3.4.Efraim Flashner
* gnu/packages/linux.scm (mdadm): Update to 3.4. [source]: Remove patch. * gnu/packages/patches/mdadm-gcc-4.9-fix.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2016-05-16gnu: bluez: Update to 5.39.Efraim Flashner
* gnu/packages/linux.scm (bluez): Update to 5.39. [source]: Use kernel mirror.
2016-05-16gnu: libical: Update to 2.0.0.Efraim Flashner
* gnu/packages/calendar.scm (libical): Update to 2.0.0. [arguments]: Add configure-flag to add "/lib64" to the rpath.
2016-05-16gnu: qemu: Update to 2.6.0.Efraim Flashner
* gnu/packages/qemu.scm (qemu): Update to 2.6.0. [arguments]: Re-enable parallel tests.
2016-05-16gnu: libqmi: Update to 1.14.2.Efraim Flashner
* gnu/packages/freedesktop.scm (libqmi): Update to 1.14.2.
2016-05-16gnu: libmbim: Update to 1.12.4.Efraim Flashner
* gnu/packages/freedesktop.scm (libmbim): Update to 1.12.4. [home-page]: Use https.
2016-05-16gnu: Add gtkspell3.Kei Yamashita
* gnu/packages/gtk.scm (gtkspell3): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-05-16gnu: exempi: Update to 2.3.0.Efraim Flashner
* gnu/packages/freedesktop.scm (exempi): Update to 2.3.0.
2016-05-16gnu: libinput: Update to 1.3.0.Efraim Flashner
* gnu/packages/freedesktop.scm (libinput): Update to 1.3.0.
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