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2022-08-01gnu: dealii: Update to 9.4.0....* gnu/packages/maths.scm (dealii): Update to 9.4.0. [propagated-inputs]: Replace sundials-5 with sundials. (dealii-openmpi)[propagated-inputs]: Replace sundials-openmpi-5 with sundials-openmpi. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Paul A. Patience
2022-08-01gnu: dealii: Use G-expressions....* gnu/packages/maths.scm (dealii)[snippet, arguments]: Use G-expressions. (dealii-openmpi)[arguments]: Same. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Paul A. Patience
2022-08-01gnu: trilinos-for-dealii-openmpi: Fix build....* gnu/packages/maths.scm (trilinos-for-dealii-openmpi)[native-inputs]: Add gcc-7 to fix the failing build with newer versions of gcc. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Paul A. Patience
2022-08-01gnu: Add r-muscat....* gnu/packages/bioconductor.scm (r-muscat): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Mădălin Ionel Patrașcu
2022-08-01gnu: mu: Update to 1.8.7....* gnu/packages/mail.scm (mu): Update to 1.8.7. [source]: Fetch from git. [build-system]: Use meson-build-system. [native-inputs]: Remove glib:bin and tzdata; add gnupg and texinfo; use new style. [inputs]: Remove guile. [arguments]: Remove obsolete 'patch-configure, 'fix-ffi, and 'check-tz-setup phases. Rename 'patch-bin-sh-in-tests to 'patch-bin-references and update it. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> muradm
2022-08-01gnu: qutebrowser: Fix indentation....* gnu/packages/web-browsers.scm (qutebrowser): Fix indentation. Maxim Cournoyer
2022-08-01gnu: qutebrowser: Fix build....Fixes <https://issues.guix.gnu.org/56864>, which is a regression introduced with a0beb297a352930b89051ff258a06d78f224d6b9. * gnu/packages/web-browsers.scm (qutebrowser) [phases]{wrap-qt-process-path}: Do not use the (no longer valid) "qtwebengine-5" label; instead, locate QtWebEngineProcess via 'search-input-file'. Reported-by: Jack Hill <jackhill@jackhill.us> Maxim Cournoyer
2022-08-01gnu: Add r-millefy....* gnu/packages/bioinformatics.scm (r-millefy): New variable. Mădălin Ionel Patrașcu
2022-08-01gnu: exiv2: Fix test failure on ppc64le and aarch64....ppc64 and aarch64 do not raise exception and thus output and exit code for test is different. See: https://github.com/Exiv2/exiv2/issues/365 and https://github.com/Exiv2/exiv2/issues/933 * gnu/packages/image.scm (exiv2)[arguments]: Add 'adjust-tests' phase. Co-authored-by: Ludovic Courtès <ludo@gnu.org> Marcel van der Boom
2022-08-01gnu: Add python-biblib....* gnu/packages/python-xyz.scm (python-biblib): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Philip McGrath
2022-08-01gnu: tractor: Update to 3.14....* gnu/packages/tor.scm (tractor): Update to 3.14. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Danial Behzadi
2022-08-01gnu: Add comma after “i.e.” in descriptions....* gnu/packages/bioconductor.scm (r-anota)[description]: Add comma after “i.e.”. * gnu/packages/code.scm (xenon)[description]: Same. * gnu/packages/cran.scm (r-crosstalk)[description]: Same. * gnu/packages/python-xyz.scm (python-radon)[description]: Same. * gnu/packages/statistics.scm (r-logspline)[description]: Same. * gnu/packages/suckless.scm (tabbed)[description]: Same. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Paul A. Patience
2022-08-01gnu: hdf5-1.8: Add missing comma to linker flag....* gnu/packages/maths.scm (hdf5-1.8)[arguments]<#:phases>: Add missing comma to linker flag. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Paul A. Patience
2022-08-01gnu: guile-lens: Fix build....* gnu/packages/guile-xyz.scm (guile-lens) [phases]{run-hall}: replace "dist" to "build-system". Signed-off-by: Ludovic Courtès <ludo@gnu.org> Z572
2022-08-01gnu: xdot: Build with librsvg-for-system....* gnu/packages/graphviz.scm (xdot)[inputs]: Replace librsvg with librsvg-for-system. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Denis 'GNUtoo' Carikli
2022-08-01gnu: Add cardpeek....* gnu/packages/security-token.scm (cardpeek): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Denis 'GNUtoo' Carikli
2022-08-01gnu: python-sep: Update to 1.2.1...* gnu/packages/astronomy.scm: (python-sep): Update to 1.2.1. Inherit from libsep Signed-off-by: Ludovic Courtès <ludo@gnu.org> Sharlatan Hellseher
2022-08-01gnu: Add libsep...* gnu/packages/astronomy.scm: (libsep): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Sharlatan Hellseher
2022-08-01gnu: gnutls: Add 3.7.7....* gnu/packages/tls.scm (gnutls-latest): New variable. Ludovic Courtès
2022-08-01gnu: python-bbknn: Set NUMBA_CACHE_DIR....* gnu/packages/bioinformatics.scm (python-bbknn)[arguments]: Add phase 'set-numba-cache-dir. Ricardo Wurmus
2022-08-01gnu: python-umap-learn: Disable unreliable test....* gnu/packages/machine-learning.scm (python-umap-learn)[arguments]: Disable test_densmap_trustworthiness_on_iris_supervised. Ricardo Wurmus
2022-08-01gnu: python-umap-learn: Set NUMBA_CACHE_DIR....* gnu/packages/machine-learning.scm (python-umap-learn)[arguments]: Add phase to set NUMBA_CACHE_DIR. Ricardo Wurmus
2022-07-31gnu: jami: Apply upstream patch that fixes a usability issue....* gnu/packages/patches/jami-fix-esc-bug.patch: New patch. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/jami.scm (%jami-sources): Apply it. Maxim Cournoyer
2022-07-31gnu: jami: Update to 20220726.1515.da8d1da....* gnu/packages/jami.scm (jami): Update to 20220726.1515.da8d1da. [configure-flags]: New argument. [phases]{fix-version-string}: Adjust file name. {use-desktop-opengl}: Delete obsolete phase. {patch-source}: New phase. [native-inputs]: Add googletest and vulkan-headers. Replace qttools-5 with qttools. [inputs]: Add libxkbcommon, qt5compat, qtnetworkauth, qtpositioning and vulkan-loader. Remove qtwebengine-5, qtwebchannel-5, qtgraphicaleffects, qtquickcontrols-5 and qtquickcontrols2-5. Update qtsvg-5, qtmultimedia-5 and qtdeclarative-5 to their Qt 6 equivalent. Maxim Cournoyer
2022-07-31gnu: Deprecate jami-gnome for jami....* gnu/packages/jami.scm (jami-gnome): Delete package, deprecating it for jami. Maxim Cournoyer
2022-07-31gnu: Remove jami-libclient....* gnu/packages/jami.scm (jami-libclient): Delete variable. (libringclient): Likewise. (jami-gnome)[inputs]: Remove jami-libclient. (jami)[inputs]: Likewise. Maxim Cournoyer
2022-07-31gnu: libjami: Enable test agent....* gnu/packages/jami.scm (libjami)[configure-flags]: Add '--enable-agent' and remove FIXME. [tests?]: Update comment. Maxim Cournoyer
2022-07-31gnu: libjami: Update to 20220726.1515.da8d1da....* gnu/packages/patches/jami-fix-crash-on-quit.patch: Delete file. * gnu/packages/patches/jami-images-loading.patch: Likewise. * gnu/packages/patches/jami-libclient-audio-managers.patch: Likewise. * gnu/packages/patches/jami-memory-usage.patch: Likewise. * gnu/local.mk (dist_patch_DATA): De-register removed patches. * gnu/packages/jami.scm (%jami-version): Update to 20220726.1515.da8d1da. (libjami)[configure-flags]: Add '--disable-static'. (jami-apply-custom-patches): Adjust for top directory renaming. (%ffmpeg-default-configure-flags): Add muxer support for g726 and g726le. Add demuxer support for g723_1, g726 and g726le. Add encoder/decoder support for g726, g726le and g723_1. Add decoder support for g729. (ffmpeg-jami)[patches]: Add 'libopusenc-reload-packet-loss-at-encode'. (jami-libclient)[native-inputs]: New field. [inputs]: Add ffmpeg-jami and libxkbcommon. [propagated-inputs]: Replace qtbase-5 with qtbase. Maxim Cournoyer
2022-07-31gnu: Add qtpositioning....* gnu/packages/qt.scm (qtpositioning): New variable. Maxim Cournoyer
2022-07-31gnu: Add qtnetworkauth, version 6.3.1....* gnu/packages/qt.scm (qtnetworkauth): New variable. Maxim Cournoyer
2022-07-31gnu: qtnetworkauth: Rename to qtnetworkauth-5....Automated with: git grep -l qtnetworkauth | xargs sed 's/\bqtnetworkauth\b/\0-5/g' -i Maxim Cournoyer
2022-07-31gnu: Add qttools, version 6.3.1....* gnu/packages/qt.scm (qttools): New variable. Maxim Cournoyer
2022-07-31gnu: qttools: Rename to qttools-5....Automated with: git grep -l qttools | xargs sed 's/\bqttools\b/\0-5/g' -i git checkout NEWS Maxim Cournoyer
2022-07-31gnu: Add qt5compat....* gnu/packages/qt.scm (qt5compat): New variable. Maxim Cournoyer
2022-07-31gnu: Add qtwebengine, version 6.3.1....* gnu/packages/qt.scm (qtwebengine): New variable. Maxim Cournoyer
2022-07-31gnu: qtwebengine: Rename to qtwebengine-5....Automated with: git grep -l qtwebengine | xargs sed 's/\bqtwebengine\b/\0-5/g' -i git checkout NEWS Maxim Cournoyer
2022-07-31gnu: Add qtwebchannel, version 6.3.1....* gnu/packages/qt.scm (qtwebchannel): New variable. Maxim Cournoyer
2022-07-31gnu: qtwebchannel: Rename to qtwebchannel-5....Automated via: git grep -l qtwebchannel | xargs sed 's/\bqtwebchannel\b/\0-5/g' -i git checkout NEWS Maxim Cournoyer
2022-07-31gnu: Add qtwebsockets, version 6.3.1....* gnu/packages/qt.scm (qtwebsockets): New variable. Maxim Cournoyer
2022-07-31gnu: qtwebsockets: Rename to qtwebsockets-5....Automated via: git grep -l qtwebsockets | xargs sed 's/\bqtwebsockets\b/\0-5/g' -i git checkout NEWS Maxim Cournoyer
2022-07-31gnu: qtquickcontrols2: Define as obsoleted by qtdeclarative....* gnu/packages/qt.scm (qtquickcontrols2): New variable. Maxim Cournoyer
2022-07-31gnu: qtquickcontrols2: Rename to qtquickcontrols2-5....Automated via: git grep -l qtquickcontrols2 | xargs sed 's/\bqtquickcontrols2\b/\0-5/g' -i git checkout NEWS Maxim Cournoyer
2022-07-31gnu: qtquickcontrols: Rename to qtquickcontrols-5....Automated via: git grep -l qtquickcontrols | xargs sed 's/\bqtquickcontrols\b/\0-5/g' -i git checkout NEWS Maxim Cournoyer
2022-07-31gnu: Add qtdeclarative, version 6.3.1....* gnu/packages/qt.scm (qtdeclarative): New variable. Maxim Cournoyer
2022-07-31gnu: qtdeclarative: Rename to qtdeclarative-5....Automated via the following commands: git grep -l '\bqtdeclarative\b' | xargs sed -E 's/qtdeclarative/\0-5/g' -i git checkout NEWS Maxim Cournoyer
2022-07-31gnu: Add qtmultimedia, version 6.3.1....* gnu/packages/qt.scm (qtmultimedia): New variable. Maxim Cournoyer
2022-07-31gnu: qtmultimedia: Rename to qtmultimedia-5....Automated via: git grep -l qtmultimedia | xargs sed 's/qtmultimedia/qtmultimedia-5/g' -i git checkout NEWS Maxim Cournoyer
2022-07-31gnu: Add qtshadertools....* gnu/packages/qt.scm (qtshadertools): New variable. Maxim Cournoyer
2022-07-31gnu: qpwgraph: Migrate to Qt 6 and add libxkbcommon input....* gnu/packages/audio.scm (qpwgraph)[inputs]: Replace qtbase-5 with qtbase, qtsvg-5 with qtsvg. Add libxkbcommon. Maxim Cournoyer
2022-07-31gnu: Add qtsvg, version 6.3.1....* gnu/packages/qt.scm (qtsvg): New variable. Maxim Cournoyer