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2023-01-06gnu: python-astropy: Update to 5.1.1.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-astropy): Update to 5.1.1. [source]{snippet}: Unbundle wcslib. [arguments]{phases}: preparations: Use all system libraries. [inputs]: Add wcslib. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-01-06gnu: wcslib: Update to 7.12.Sharlatan Hellseher
* gnu/packages/astronomy.scm (wcslib): Update to 7.12. [arguments]: Use Gexp, enable parallel tests. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-01-06gnu: python-fitsio: Update to 1.1.8.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-fitsio): Update to 1.1.8. [arguments]{phases}: skip-bzip2-test remove redundant phase as cfitsio built with bzip2 support. [inputs]: Add curl-minimal. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-01-06gnu: cfitsio: Build with bzip2 support.Sharlatan Hellseher
* gnu/packages/astronomy.scm (cfitsio): [arguments](configure-flags): Add bzip2 option. [inputs]: Add bzip2. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-01-06gnu: cfitsio: Update to 4.2.0.Sharlatan Hellseher
Fix build on aarch64-linux as reported in: - https://issues.guix.gnu.org/59323 - https://github.com/rwesson/ALFA/issues/29 The latest version passed build on aarch64-linux system with curl and gfortran enabled. wcslib@7.5 passed build with curl enabled (was marked as failing in cements). * gnu/packages/astronomy.scm (cfitsio): Update to 4.2.0. [arguments]: Use Gexp, enable tests. [arguments](phases): Delete check and add post-install-check phases. [native-inputs]: Add gfortran. [inputs]: Add curl, zlib. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-01-06gnu: guile-email: Update to 0.3.0.Arun Isaac
* gnu/packages/guile-xyz.scm (guile-email): Update to 0.3.0. [native-inputs]: Remove pkg-config and lzip. Add texinfo. [arguments]: Remove GUILE_AUTO_COMPILE=0 make-flag. Add prefix make-flag. Delete configure phase. (guile2.2-email)[arguments]: Add guile_effective_version=2.2 make-flag. * gnu/packages/patches/guile-email-fix-tests.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Unregister it.
2023-01-06gnu: Update guile-syntax-highlight to 0.2.0.David Thompson
* gnu/packages/guile-xyz.scm (guile-syntax-highlight): Update to 0.2.0.
2023-01-06gnu: bbmap: Update to 39.01.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (bbmap): Update to 39.01.
2023-01-06gnu: bbmap: Use gexp.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (bbmap)[arguments]: Use gexp.
2023-01-06gnu: nanopolish: Drop input labels.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (nanopolish)[inputs]: Drop labels.
2023-01-06gnu: nanopolish: Update to 0.14.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (nanopolish): Update to 0.14.0. [source]: Update snippet. [arguments]: Use gexp; use cc-for-target; drop #T from build phases. [inputs]: Add minimap2. [native-inputs]: Add cmake-minimal.
2023-01-06gnu: filtlong: Use Python 3.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (filtlong)[inputs]: Replace python-2 with python-wrapper.
2023-01-06gnu: filtlong: Use gexp.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (filtlong)[arguments]: Use gexp.
2023-01-06gnu: filtlong: Drop input labels.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (filtlong)[inputs]: Drop labels.
2023-01-06gnu: filtlong: Remove trailing #T from build phases.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (filtlong)[arguments]: Remove trailing #T.
2023-01-06gnu: ngless: Use gexp.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (ngless)[arguments]: Use gexp.
2023-01-06gnu: ngless: Remove trailing #T from build phases.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (ngless)[arguments]: Remove trailing #T.
2023-01-06gnu: Add guile-newra.Ricardo Wurmus
* gnu/packages/guile-xyz.scm (guile-newra): New variable.
2023-01-06gnu: Add psascan.Ricardo Wurmus
* gnu/packages/cpp.scm (psascan): New variable.
2023-01-05gnu: ruby-asciidoctor: Install man page.Maxim Cournoyer
* gnu/packages/ruby.scm (ruby-asciidoctor) [phases] {install-man-page}: New phase.
2023-01-05gnu: ruby-asciidoctor: Update to 2.0.18.Maxim Cournoyer
* gnu/packages/ruby.scm (ruby-asciidoctor): Update to 2.0.18. [native-inputs]: Sort inputs. Add ruby-open-uri-cached. [phases]: Delete trailing #t. [description]: Remove mention of Docbook 4.5, no longer supported.
2023-01-05gnu: anystyle: Update to 1.3.2.Maxim Cournoyer
* gnu/packages/ruby.scm (anystyle): Update to 1.3.2. [source]: Adjust URL.
2023-01-05gnu: ruby-unicode-scripts: Update to 1.8.0.Maxim Cournoyer
* gnu/packages/ruby.scm (ruby-unicode-scripts): Update to 1.8.0. Adjust indentation.
2023-01-05gnu: ruby-minitest: Update to 5.17.0.Maxim Cournoyer
* gnu/packages/ruby.scm (ruby-minitest): Update to 5.17.0. (ruby-minitest-5.14): New variable. (ruby-minitest-4): Delete trailing #t. (ruby-byebug): Delete trailing #t. [native-inputs]: Replace ruby-minitest with ruby-minitest-5.14.
2023-01-05gnu: ath9k-htc-firmware: Fix deprecation warnings.Maxim Cournoyer
* gnu/packages/firmware.scm (ath9k-htc-firmware): Invoke cross-binutils using keyword arguments.
2023-01-05gnu: zfs: Update to 2.1.7.Brian Cully
* gnu/packages/file-systems.scm (zfs): Update to 2.1.7. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-01-05gnu: flightgear: Update to 2020.3.17.Parnikkapore
* gnu/packages/games (flightgear): Update to 2020.3.17. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-01-05gnu: kicad: Update to 6.0.10.Peter Polidoro
* gnu/packages/engineering.scm (kicad): Update to 6.0.10. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-01-05gnu: Add charls.Tor-björn Claesson
* gnu/packages/image-processing.scm (charls): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-01-05gnu: gpodder: Update to 3.11.0.raingloom
* gnu/packages/gpodder.scm (gpodder): Update to 3.11.0. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-01-05gnu: Add yaru-themeflorhizome
* gnu/packages/gnome-xyz (yaru-theme): New variable Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-01-05gnu: Add zls.Maya Tomasek
* gnu/packages/zig-xyz.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-01-05gnu: Add emacs-ibrowse.Nicolas Graves
* gnu/packages/emacs-xyz.scm (emacs-ibrowse): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-01-05gnu: guile-avahi: Fix cross-compilation.Ludovic Courtès
Previously ./configure would fail because 'guile.m4' wouldn't be picked up by 'autoreconf' when generating it. * gnu/packages/guile-xyz.scm (guile-avahi)[native-inputs]: Add GUILE-3.0.
2023-01-04gnu: kodi/wayland: Fix syntax error.Ricardo Wurmus
This is a follow-up to commit dbd9305a5682b1c5cd0b2a516b09f1f3af47209d. Fixes the cuirass evaluation problems reported and investigated by Leo Famulari. * gnu/packages/kodi.scm (kodi/wayland)[inputs]: Do not wrap arguments to "prepend" in "list".
2023-01-04gnu: kodi/wayland: Do not use package/inherit.Ricardo Wurmus
* gnu/packages/kodi.scm (kodi/wayland): Use regular inheritance.
2023-01-04gnu: bamtools: Build shared libraries.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (bamtools)[arguments]: Build shared libraries instead of static libs.
2023-01-04gnu: zlib: Update to 1.2.12 [fixes CVE-2018-25032].Leo Famulari
https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2018-25032 https://seclists.org/oss-sec/2022/q1/191 * gnu/packages/compression.scm (zlib)[replacement]: New field. (zlib-1.2.12): New variable.
2023-01-04gnu: Add sugar.Ricardo Wurmus
* gnu/packages/sugar.scm (sugar): New variable.
2023-01-04gnu: sugar-toolkit-gtk3: Add missing inputs.Ricardo Wurmus
* gnu/packages/sugar.scm (sugar-toolkit-gtk3)[propagated-inputs]: Add python-pycairo and python-dateutil.
2023-01-04gnu: Add python-gwebsockets.Ricardo Wurmus
* gnu/packages/python-web.scm (python-gwebsockets): New variable.
2023-01-04gnu: Add scallop.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (scallop): New variable.
2023-01-04gnu: Add sugar-artwork.Ricardo Wurmus
* gnu/packages/sugar.scm (sugar-artwork): New variable.
2023-01-04gnu: Add sugar-datastore.Ricardo Wurmus
* gnu/packages/sugar.scm (sugar-datastore): New variable.
2023-01-04gnu: sugar-toolkit-gtk3: Propagate some inputs.Ricardo Wurmus
* gnu/packages/sugar.scm (sugar-toolkit-gtk3)[inputs]: Move gdk-pixbuf, gobject-introspection, and librsvg-for-system from here... [native-inputs]: ...and move gtk+ from here... [propagated-inputs]: ...to here.
2023-01-04gnu: hunspell: Move hunspell and dictionaries to hunspell module.Brian Cully
Consolidate hunspell and its dictionaries into the (gnu packages hunspell) module instead of having them scattered about. * gnu/packages/aspell.scm (aspell-word-list, define-word-list-dictionary, hunspell-dict-{en, en-au, en-gb, en-gb-ize, en-us}): Remove variables. * gnu/packages/libreoffice.scm (hunspell, dicollecte-french-dictionary, define-french-dictionary, hunspell-dict-fr-{classique, moderne, réforme, toutes-variantes}, hunspell-dict-pl, hunspell-dict-de, hunspell-dict-hu): Remove variables. * gnu/packages/hunspell.scm (hunspell, dicollecte-french-dictionary, define-french-dictionary, hunspell-dict-fr-{classique, moderne, réforme, toutes-variantes}, hunspell-dict-pl, hunspell-dict-de, hunspell-dict-hu, aspell-word-list, define-word-list-dictionary, hunspell-dict-{en, en-au, en-gb, en-gb-ize, en-us}): Add variables. (hunspell-dictionary): Explicitly declare upstream libreoffice version to prevent circular dependency. * gnu/packages/ebook.scm, gnu/packages/enchant.scm, gnu/packages/freedesktop.scm, gnu/packages/gnuzilla.scm, gnu/packages/kde-frameworks.scm, gnu/packages/messaging.scm, gnu/packages/scribus.scm, gnu/packages/task-management.scm, gnu/packages/telegram.scm, gnu/packages/tex.scm, gnu/packages/text-editors.scm, gnu/packages/video.scm: Adjust module imports.
2023-01-04gnu: Add sugar-toolkit-gtk3.Ricardo Wurmus
* gnu/packages/sugar.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2023-01-04gnu: Add wdl.Sughosha
Alined and improved the definition, as per the chat in IRC. * gnu/packages/cpp.scm (wdl): New public variable. * gnu/packages/patches/wdl-link-libs-and-fix-jnetlib.patch: New file. * gnu/local.mk: Register the patch file.
2023-01-04gnu: emacs-inspector: Update to 0.9.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-inspector): Update to 0.9.
2023-01-04gnu: emacs-embark: Update to 0.19.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-embark): Update to 0.19.
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