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2019-07-10gnu: sedsed: Update to 1.1.Tobias Geerinckx-Rice
* gnu/packages/admin.scm (sedsed): Update to 1.1. [arguments]: Use (default) Python (3).
2019-07-10gnu: sedsed: Symlink after wrapping.Tobias Geerinckx-Rice
Drop unused .sedsed-real symlink and avoid sedsed → sedsed.py → .sedsed.py-real exec chain. * gnu/packages/admin.scm (sedsed)[arguments]: Move ‘symlink’ phase after ‘wrap’.
2019-07-10gnu: mutter: Remove duplicate gtk+ input.Tobias Geerinckx-Rice
* gnu/packages/gnome.scm (mutter)[arguments]: Remove duplicate gtk+ from propagated-inputs.
2019-07-10gnu: a2ps: Fix CVE-2015-8107.Efraim Flashner
* gnu/packages/pretty-print.scm (a2ps)[source]: Add patch. * gnu/packages/patches/a2ps-CVE-2015-8107.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it.
2019-07-10gnu: mupdf: Update to 1.15.0 [fixes CVE-2018-18662, CVE-2018-19777,Efraim Flashner
CVE-2018-1988{1,2}, CVE-2019-613{0,1}, CVE-2019-7321]. * gnu/packages/pdf.scm (mupdf): Update to 1.15.0. [source]: Update source snippet.
2019-07-10gnu: mujs: Update to 1.0.6 [fixes CVE-2019-1141{1,2,3}, CVE-2019-12798].Efraim Flashner
* gnu/packages/javascript.scm (mujs): Update to 1.0.6. [source]: Download using url-fetch. [arguments]: Update 'install-shared-library phase. [home-page]: Update to new home-page.
2019-07-10gnu: plib: Fix CVE-2011-4620, CVE-2012-4552.Efraim Flashner
* gnu/packages/game-development.scm (plib)[patches]: Add patches. * gnu/packages/patches/plib-CVE-2011-4620.patch, gnu/packages/patches/plib-CVE-2012-4552.patch: New files. * gnu/local.mk (dist_patch_DATA): Register them.
2019-07-10gnu: python-gnupg: Update to 0.4.4 [fixes CVE-2019-6690].Efraim Flashner
* gnu/packages/gnupg.scm (python-gnupg): Update to 0.4.4.
2019-07-10gnu: gpgme: Add updater properties.Efraim Flashner
* gnu/packages/gnupg.scm (gpgme)[properties]: New field. Add ftp-server, ftp-directory.
2019-07-10gnu: npth: Add updater properties.Efraim Flashner
* gnu/packages/gnupg.scm (npth)[properties]: New field. Add ftp-server, ftp-directory.
2019-07-10gnu: gpa: Update to 0.10.0.Efraim Flashner
* gnu/packages/gnupg.scm (gpa): Update to 0.10.0.
2019-07-10gnu: gpa: Add updater properties.Efraim Flashner
* gnu/packages/gnupg.scm (gpa)[properties]: New field, add ftp-server, ftp-directory.
2019-07-10gnu: postgresql@9: Update to 9.6.14 [fixes CVE-2018-1058, CVE-2019-9193]Efraim Flashner
* gnu/packages/databases.scm (postgresql@9): Update to 9.6.14.
2019-07-10gnu: gnupg: Update to 2.2.17.Efraim Flashner
* gnu/packages/gnupg.scm (gnupg): Update to 2.2.17.
2019-07-09gnu: icecat: Update to 60.8.0-guix1 [security fixes].Mark H Weaver
Includes fixes for CVE-2019-9811, CVE-2019-11709, CVE-2019-11711, CVE-2019-11712, CVE-2019-11713, CVE-2019-11715, CVE-2019-11717, CVE-2019-11719, CVE-2019-11729, and CVE-2019-11730. * gnu/packages/gnuzilla.scm (%icecat-version): Update to 60.8.0-guix1. (icecat-source)[upstream-firefox-source]: Update hash. (icecat): Refresh some stale comments.
2019-07-10Merge branch 'master' into stagingMarius Bakke
2019-07-10gnu: ungoogled-chromium: Increase build timeout.Marius Bakke
* gnu/packages/chromium.scm (ungoogled-chromium)[properties]: Set TIMEOUT to 40 hours.
2019-07-10gnu: rapidjson: Fix FTBFS with GCC 7.Marius Bakke
* gnu/packages/patches/rapidjson-gcc-compat.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/web.scm (rapidjson)[source](patches): New field.
2019-07-09gnu: oath-toolkit: Fix FTBFS with GCC 7.Marius Bakke
* gnu/packages/authentication.scm (oath-toolkit)[source](patches): Add upstream patch.
2019-07-09gnu: iproute2: Update to 5.2.0.Tobias Geerinckx-Rice
* gnu/packages/linux.scm (iproute): Update to 5.2.0.
2019-07-09gnu: glib: Remove superfluous input.Marius Bakke
* gnu/packages/glib.scm (glib)[inputs]: Remove BASH.
2019-07-09gnu: glib: Update to 2.60.5.Marius Bakke
* gnu/packages/glib.scm (glib): Update to 2.60.5.
2019-07-09gnu: freetype: Update to 2.10.1.Marius Bakke
* gnu/packages/fontutils.scm (freetype): Update to 2.10.1. [source](uri): Adjust for new tarball name.
2019-07-09gnu: Remove indent@2.2.10.Marius Bakke
* gnu/packages/code.scm (indent): Update to 2.2.12. [native-inputs]: Add TEXINFO. (indent-2.2.12): Remove variable.
2019-07-09gnu: flex: Remove superfluous input.Marius Bakke
The configure script will warn that "make indent" is unavailable, but apart from that this input is not actually used for the build process. * gnu/packages/flex.scm (flex)[inputs]: Remove INDENT. * gnu/packages/commencement.scm (flex-boot0)[inputs]: Likewise.
2019-07-09gnu: Python: Update to 3.7.4.Marius Bakke
* gnu/packages/python.scm (python-3.7): Update to 3.7.4. [source](snippet): Move disabled tests ... [arguments]<#:make-flags>: ... here. Enable previously failing tests. <#:phases>: Add 'set-TZDIR'. [native-inputs]: Add TZDATA-FOR-TESTS. * gnu/packages/commencement.scm (python-boot0)[arguments]: Clear <#:make-flags>. Delete 'set-TZDIR' phase. * gnu/packages/patches/python-3-fix-tests.patch: Disable two new tests that do not work in the build container. Adjust context.
2019-07-09gnu: python-internetarchive: Update to 1.8.5.Oleg Pykhalov
* gnu/packages/web.scm (python-internetarchive)[version]: Update to 1.8.5. [source](modules, snippet): New fields.
2019-07-09gnu: make-glibc-locales: Adjust patch for glibc 2.29.Kei Kebreau
The patch for glibc 2.28 and earlier replaces the same content, but the context in the patch is different enough to fail to merge. * gnu/packages/base.scm (make-glibc-locales)[source]: Add patch. * gnu/packages/patches/glibc-locales.patch: Adjust for glibc 2.29 and move old file... * gnu/packages/patches/glibc-locales-2.28.patch: ...here. * gnu/local.mk (dist_patch_DATA): Add it.
2019-07-09gnu: wgetpaste: Update to 2.29.Efraim Flashner
* gnu/packages/wget.scm (wgetpaste): Update to 2.29. [arguments]: Replace default paste service. Install license file.
2019-07-09gnu: emacs-stumpwm-mode: Update to 0.0.1-1.8fbe071.Oleg Pykhalov
* gnu/packages/emacs-xyz.scm (emacs-stumpwm-mode): Update to 0.0.1-1.8fbe071.
2019-07-09gnu: r-biocinstaller: Remove entirely.Tobias Geerinckx-Rice
This follows up on commit 0971f8bd884b6e92b77d9e12030cd58279699183, which led to ‘r-biocmanager: unbound variable’ errors. See <https://lists.gnu.org/archive/html/guix-devel/2019-07/msg00120.html>. * gnu/packages/bioinformatics.scm (r-biocinstaller): Remove variable.
2019-07-09gnu: Add anonip.Hartmut Goebel
* gnu/packages/web.scm (anonip): New variable.
2019-07-09gnu: snap: Update to 5.0.1.Nicolas Goaziou
* gnu/packages/education.scm (snap): Update to 5.0.1.
2019-07-09gnu: musescore: Update to 3.2.3.Nicolas Goaziou
* gnu/packages/music.scm (musescore): Update to 3.2.3.
2019-07-09gnu: libmicrohttpd: Update to 0.9.65.Tobias Geerinckx-Rice
* gnu/packages/gnunet.scm (libmicrohttpd): Update to 0.9.65.
2019-07-08gnu: glibc: Add 2.27 supported locales patch.Carl Dong
The 'glibc-supported-locales.patch' was updated for glibc 2.29, breaking compatibility with 2.27. Add a 2.27-specific supported locales patch. * gnu/packages/patches/glibc-2.27-supported-locales.patch: New file. * gnu/packages/base.scm (glibc-2.27)[source](patches): Use 'glibc-2.27-supported-locales.patch' instead. * gnu/local.mk (dist_patch_DATA): Adjust accordingly.
2019-07-09gnu: grub: Build ‘grub-mount’.Tobias Geerinckx-Rice
This increases the closure size by a mere 1.8 MiB (0.8%). * gnu/packages/bootloaders.scm (grub)[inputs]: Add fuse.
2019-07-09gnu: grub: Update to 2.04.Tobias Geerinckx-Rice
* gnu/packages/bootloaders.scm (grub): Update to 2.04. [source]: Remove upstreamed patches. [arguments]: Don't require Python. Add a ‘disable-pixel-perfect-test’ phase to skip tests that fail with with our newer Unifont. * gnu/packages/patches/grub-efi-fat-serial-number.patch: Adjust context. * gnu/packages/patches/grub-binutils-compat.patch, gnu/packages/patches/grub-check-error-efibootmgr.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Remove them.
2019-07-08gnu: Update to 0.18.0.Carl Dong
* gnu/packages/finance.scm (bitcoin-core): Update to 0.18.0. [inputs]: Use bdb-4.8 for compatibility. [arguments]: Remove --with-incompatible-bdb from configure flags and add check-functional phase for functional tests.
2019-07-08gnu: bdb: Add 4.8.30.Carl Dong
* gnu/packages/dbm.scm (bdb-4.8): New variable. [arguments]: Configure and build from 'build_unix' directory as mentioned in documentation. (bdb-5.3): Inherit from bdb-4.8. (bdb-6): Inherit from bdb-4.8. (bdb): Point to bdb-6.
2019-07-08gnu: Remove r-biocinstaller.Tobias Geerinckx-Rice
It requires R < 3.6 and is no longer supported. * gnu/packages/bioinformatics.scm (r-biocinstaller): Define as deprecated in favour of r-biocmanager.
2019-07-08gnu: r-xbioc: Update to 0.1.16-1.6ff0670.Tobias Geerinckx-Rice
This is needed to deprecate r-biocinstaller, which is no longer distributed. * gnu/packages/bioinformatics.scm (r-xbioc): Update to 0.1.16-1.6ff0670. [propagated-inputs]: Replace deprecated r-biocinstaller with r-biocmanager.
2019-07-08gnu: cmh: Fix build.Tobias Geerinckx-Rice
This follows up on commit 1de48e8f8afec23847458c533d2fae0d69d8942a. * gnu/packages/algebra.scm (fplll-4-cmh): New variable. (cmh)[inputs]: Use it.
2019-07-08gnu: libomp: Download over HTTPS.Tobias Geerinckx-Rice
* gnu/packages/llvm.scm (libomp)[source]: Use HTTPS.
2019-07-08gnu: libomp: Fix source hash.Tobias Geerinckx-Rice
This is a follow-up to commit c5296e205b65a9b53553cf45be2ab223d5e82df5, which updated llvm. * gnu/packages/llvm.scm (libomp)[source]: Fix hash.
2019-07-08gnu: r-txdb-mmusculus-ucsc-mm10-knowngene: Update to 3.4.7.Tobias Geerinckx-Rice
* gnu/packages/bioconductor.scm (r-txdb-mmusculus-ucsc-mm10-knowngene): Update to 3.4.7.
2019-07-08gnu: Add emacs-polymode-org.Joseph LaFreniere
* gnu/packages/emacs-xyz.scm (emacs-polymode-org): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-07-08gnu: emacs-polymode: Update to 0.2.Joseph LaFreniere
* gnu/packages/emacs-xyz.scm (emacs-polymode): Update to 0.2. [source]: Change URL of Git repository to Polymode GitHub project. [homepage]: Change URL to polymode GitHub project. [description]: Realign text. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-07-08gnu: i3blocks: Update to ec050e7.ison
* gnu/packages/wm.scm (i3blocks): Update to ec050e7. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-07-08gnu: dosfstools: Enable compat symlinks.Pierre Langlois
Enable compatibility symlinks to provide commands such as `mkfs.vfat`. * gnu/packages/disk.scm (dosfstools)[arguments]: Pass "--enable-compat-symlinks" to configure. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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