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2017-07-25gnu: openmpi: Update to 1.10.7....* gnu/packages/mpi.scm (openmpi): Update to 1.10.7. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Dave Love
2017-07-25gnu: Add guile2.0-git....* gnu/packages/guile.scm (guile2.0-git): New variable. Ludovic Courtès
2017-07-25gnu: Add guile2.0-bytestructures....* gnu/packages/patches/guile-bytestructures-name-clash.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/guile.scm (guile-bytestructures)[source]: Use it. [arguments]: Unpack the source. [native-inputs]: New field. (guile2.0-bytestructures): New variable. Ludovic Courtès
2017-07-25gnu: maxima: Ensure binutils are available at runtime....* gnu/packages/maths.scm (maxima)[arguments]: Use modify-phases syntax. Modify 'post-install' phase. Kei Kebreau
2017-07-25Revert "gnu: maxima: Ensure gcc is available at runtime."...This reverts commit f2fa86cc82b5941bde63b666337eea59aa609e55. Commit 5ea8dbf0c906d51779ba0cf775ec9967f5f42382 fixes the underlying issue in GNU Common Lisp. Kei Kebreau
2017-07-25gnu: gcl: Ensure gcc and binutils are available at runtime....* gnu/packages/lisp.scm (gcl)[arguments]: Add -fgnu89-inline to CFLAGS. Add GCC path to make-flags. Modify 'pre-conf' phase. Add 'wrap' phase. Kei Kebreau
2017-07-25gnu: webkitgtk: Update to 2.16.6 [security fixes]....Includes fixes for CVE-2017-7039, CVE-2017-7018, CVE-2017-7030, CVE-2017-7037, CVE-2017-7034, CVE-2017-7055, CVE-2017-7056, CVE-2017-7064, CVE-2017-7061, CVE-2017-7048, and CVE-2017-7046. * gnu/packages/webkit.scm (webkitgtk): Update to 2.16.6. Mark H Weaver
2017-07-24gnu: xterm: Update to 330....* gnu/packages/xorg.scm (xterm): Update to 330. Leo Famulari
2017-07-24gnu: dialog: Update to 1.3-20170509....* gnu/packages/ncurses.scm (dialog): Update to 1.3-20170509. Leo Famulari
2017-07-24gnu: opus: Update to 1.2.1....* gnu/packages/xiph.scm (opus): Update to 1.2.1. [source]: Use new source URL. Leo Famulari
2017-07-24gnu: gnome: Add deja-dup....* gnu/packages/gnome.scm (deja-dup): New variable. * gnu/packages/patches/deja-dup-use-ref-keyword-for-iter.patch: New file. * gnu/local.mk (dist_patch_DATA): Add patch file entry. Christopher Baines
2017-07-24gnu: guix: Update snapshot....* gnu/packages/package-management.scm (guix): Update to f1ddfe4. Ludovic Courtès
2017-07-24gnu: python-flaky: Fix Texinfo markup in description....* gnu/packages/python.scm (python-flaky)[description]: Escape "@". Ludovic Courtès
2017-07-23gnu: isc-dhcp: Update bundled bind to 9.9.10-P3....This fixes a regression introduced in the fix for CVE-2017-3142, in BIND 9.9.10-P2, commit ecb232bdfcb2718de5944bcf4d9c4e288ec41519. See 'CHANGELOG' in the source distribution for more information. * gnu/packages/admin.scm (isc-dhcp): Update bundled bind to 9.9.10-P3. Leo Famulari
2017-07-23gnu: bind: Update to 9.11.1-P3....This fixes a regression introduced in the fix for CVE-2017-3142, in BIND 9.11.1-P2, commit faa1369e3cb72bda4ba8b63029d0ad780df9cf78. See 'CHANGELOG' in the source distribution for more information. * gnu/packages/dns.scm (isc-bind): Update to 9.11.1-P3. Leo Famulari
2017-07-23gnu: ncurses/gpm: Move to (gnu packages ncurses)....This is needed to avoid compilation problems caused by the cyclic dependency between (gnu packages ncurses) and (gnu packages linux). * gnu/packages/linux.scm (ncurses/gpm): Move to ... * gnu/packages/ncurses.scm (ncurses/gpm): ... here. Fix misleading indentation. Add (gnu packages linux) to the module imports. Mark H Weaver
2017-07-23gnu: Add support for aarch64's compiled kernel....* gnu/packages/linux.scm (linux-libre)[arguments]: Add to the regex to find and install the aarch64-linux kernel. * gnu/system.scm (system-linux-image-file-name): Add entry for aarch64. Efraim Flashner
2017-07-23gnu: Add xf86-video-freedreno....* gnu/packages/xorg.scm (xf86-video-freedreno): New variable. Efraim Flashner
2017-07-23gnu: Add u-boot-odroid-c2....* gnu/packages/bootloaders.scm (u-boot-odroid-c2): New variable. Efraim Flashner
2017-07-23gnu: u-boot: Update to 2017.07....* gnu/packages/bootloaders.scm (u-boot): Update to 2017.07. Efraim Flashner
2017-07-23gnu: tevent: Update to 0.9.33....* gnu/packages/samba.scm (tevent): Update to 0.9.33. Marius Bakke
2017-07-23gnu: talloc: Update to 2.1.10....* gnu/packages/samba.scm (talloc): Update to 2.1.10. Marius Bakke
2017-07-23gnu: ldb: Update to 1.1.31....* gnu/packages/samba.scm (ldb): Update to 1.1.31. [native-inputs]: Add CMOCKA. Marius Bakke
2017-07-23gnu: cmocka: Update to 1.1.1....* gnu/packages/check.scm (cmocka): Update to 1.1.1. Marius Bakke
2017-07-23gnu: tdb: Update to 1.3.14....* gnu/packages/databases.scm (tdb): Update to 1.3.14. Marius Bakke
2017-07-23gnu: python-scipy: Update to 0.19.1....* gnu/packages/python.scm (python-scipy): Update to 0.19.1. [source]: Use 'pypi-uri'. Marius Bakke
2017-07-23gnu: python-matplotlib: Update to 2.0.2....* gnu/packages/python.scm (python-matplotlib): Update to 2.0.2. [source]: Use 'pypi-uri'. Marius Bakke
2017-07-23gnu: python-pyparsing: Update to 2.2.0....* gnu/packages/python.scm (python-pyparsing, python2-pyparsing): Update to 2.2.0. Marius Bakke
2017-07-23gnu: python-pyparsing: Use 'modify-phases' syntax....* gnu/packages/python.scm (python-pyparsing)[arguments]<#:phases>: Use 'modify-phases'. Marius Bakke
2017-07-23gnu: Add xmobar....gnu/packages/wm.scm (xmobar): New variable. Signed-off-by: Leo Famulari <leo@famulari.name> Oleg Pykhalov
2017-07-23gnu: bash-completion: Update to 2.7....* gnu/packages/bash.scm (bash-completion): Update to 2.7. Efraim Flashner
2017-07-22gnu: getmail: Update to 5.1....* gnu/packages/mail.scm (getmail): Update to 5.1. Signed-off-by: Leo Famulari <leo@famulari.name> ng0
2017-07-23gnu: metabat: Update to 2.11.1....* gnu/packages/bioinformatics.scm (metabat): Update to 2.11.1. [source]: Add patch to fix compilation. [arguments]: Adjust regular expressions modifying 'SConstruct'. * gnu/packages/patches/metabat-fix-compilation.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Ben Woodcroft
2017-07-23gnu: python-plastid: Update to 0.4.8....* gnu/packages/bioinformatics.scm (python-plastid): Update to 0.4.8. Ben Woodcroft
2017-07-23gnu: bcftools: Update to 1.5....* gnu/packages/bioinformatics.scm (bcftools): Update to 1.5. [origin]: Remove fix-makefile patch. [arguments]: Add configure flags, add LIBS make flag. Do not delete configure phase. * gnu/packages/patches/bcftools-fix-makefile.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it. Ben Woodcroft
2017-07-23gnu: samtools: Update to 1.5....* gnu/packages/bioinformatics.scm (samtools): Update to 1.5. Ben Woodcroft
2017-07-23gnu: htslib: Update to 1.5....* gnu/packages/bioinformatics.scm (htslib): Update to 1.5. Ben Woodcroft
2017-07-23gnu: python-pysam: Update to 0.11.2.2....* gnu/packages/bioinformatics.scm (python-pysam): Update to 0.11.2.2. Ben Woodcroft
2017-07-23gnu: bamm: Use htslib-1.3....* gnu/packages/bioinformatics (htslib-1.3): New variable. (bamm)[inputs]: Replace htslib with htslib-1.3. Ben Woodcroft
2017-07-23gnu: bcftools: Update to 1.4.1....* gnu/packages/bioinformatics.scm (bcftools): Update to 1.4.1. [arguments]: Move Makefile modifications from here ... [source]: ... to added patch. Adjust patch for update to 1.4. * gnu/packages/patches/bcftools-fix-makefile.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. Ben Woodcroft
2017-07-23gnu: samtools: Update to 1.4.1....* gnu/packages/bioinformatics.scm (samtools): Update to 1.4.1. [arguments]: Add '--with-htslib=system' configure flag. [inputs]: Add htslib. Ben Woodcroft
2017-07-23gnu: htslib: Update to 1.4.1....* gnu/packages/bioinformatics.scm (htslib): Update to 1.4.1. [inputs]: Add curl, openssl. Ben Woodcroft
2017-07-23gnu: samtools: Use "modify-phases" syntax....* gnu/packages/bioinformatics.scm (samtools)[arguments]: Use "modify-phases" syntax. Ben Woodcroft
2017-07-22gnu: bspwm: Update to 0.9.3....* gnu/packages/wm.scm (bspwm): Update to 0.9.3. Signed-off-by: Leo Famulari <leo@famulari.name> ng0
2017-07-22gnu: Add oksh....* gnu/packages/shells.scm (oksh): New variable. Signed-off-by: Leo Famulari <leo@famulari.name> ng0
2017-07-22gnu: quassel: Enable TLS....* gnu/packages/patches/quassel-fix-tls-check.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/irc.scm (quassel)[source]: Use it. Signed-off-by: Leo Famulari <leo@famulari.name> Ryan Moe
2017-07-23gnu: youtube-dl: Update to 2017.07.23....* gnu/packages/video.scm (youtube-dl): Update to 2017.07.23. Tobias Geerinckx-Rice
2017-07-23gnu: mosh: Update to 1.3.2....* gnu/packages/ssh.scm (mosh): Update to 1.3.2. Tobias Geerinckx-Rice
2017-07-22gnu: Add openmolar....* gnu/packages/medical.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. Co-authored-by: Quiliro <quiliro@fsfla.org> Ricardo Wurmus
2017-07-22gnu: Add python-pyqt+qscintilla....* gnu/packages/qt.scm (python-pyqt+qscintilla): New variable. Ricardo Wurmus
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