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2018-04-01gnu: libidn: Update to 1.34.Ludovic Courtès
* gnu/packages/libidn.scm (libidn): Update to 1.34.
2018-04-01gnu: commencement: Avoid extra Perl build in the DAG.Ludovic Courtès
* gnu/packages/commencement.scm (grep-final): Move reference to PERL-BOOT0 outside of 'package-with-explicit-inputs'. Previously we would actually depend on a variant of 'perl-boot0' built with %BOOT5-INPUTS, which defeated the intent to not add an extra Perl build in the DAG.
2018-04-01gnu: sed: Update to 4.5.Ludovic Courtès
* gnu/packages/base.scm (sed): Update to 4.5. [arguments]: Remove 'patch-test-suite' phase. [native-inputs]: New field.
2018-04-01gnu: glibc: Reinstate fallback code for systems lacking 'prlimit64'.Ludovic Courtès
* gnu/packages/patches/glibc-reinstate-prlimit64-fallback.patch: New file. * gnu/packages/base.scm (glibc/linux)[source]: Use it. * gnu/local.mk (dist_patch_DATA): Add it.
2018-03-31gnu: python-pycairo: Update to 1.16.3.Arun Isaac
* gnu/packages/gtk.scm (python-pycairo): Update to 1.16.3. [source]: Remove patch. [build-system]: Switch to python-build-system. [native-inputs]: Remove python-waf. [home-page]: Use HTTPS URI. * gnu/packages/patches/pycairo-wscript.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Unregister it.
2018-03-31gnu: python-pytest: Update to 3.5.0.Arun Isaac
* gnu/packages/python.scm (python-six): Replace system* with invoke. (python-six-bootstrap, python2-six-bootstrap, python2-funcsigs-bootstrap): New variables. (python-more-itertools)[propagated-inputs]: Replace python-six with python-six-bootstrap. * gnu/packages/check.scm (python-pytest): Update to 3.5.0. [propagated-inputs]: Add python-attrs-bootstrap, python-more-itertools-bootstrap, python-pluggy and python-six-bootstrap. [properties]: Add python2-variant. (python2-pytest)[propagated-inputs]: Add python2-funcsigs. (python-pytest-bootstrap)[properties]: Add python2-variant. (python2-pytest-bootstrap)[propagated-inputs]: Add python2-funcsigs-bootstrap.
2018-03-31gnu: python-py: Update to 1.5.3.Arun Isaac
* gnu/packages/python.scm (python-py): Update to 1.5.3. [home-page]: Update URI.
2018-03-31gnu: python-hypothesis: Update to 3.52.0.Arun Isaac
* gnu/packages/check.scm (python-hypothesis): Update to 3.52.0. [propagated-inputs]: Add python-attrs and python-coverage. [home-page]: Update URI. * gnu/packages/python.scm (python-attrs-bootstrap, python2-attrs-bootstrap): New variables.
2018-03-31gnu: Add python-more-itertools.Arun Isaac
* gnu/packages/python.scm (python-more-itertools, python2-more-itertools): New variables.
2018-03-31gnu: python-pluggy: Update to 0.6.0.Arun Isaac
* gnu/packages/python.scm (python-pluggy): Update to 0.6.0.
2018-03-31gnu: python-pyasn1: Update to 0.4.2.Arun Isaac
* gnu/packages/python.scm (python-pyasn1): Update to 0.4.2.
2018-03-31gnu: python-attrs: Update to 17.4.0.Arun Isaac
* gnu/packages/python.scm (python-attrs): Update to 17.4.0.
2018-03-29gnu: tzdata: Update to 2018d.Leo Famulari
* gnu/packages/base.scm (tzdata): Update to 2018d.
2018-03-29ld-wrapper: Allow linking with non-store libraries by default.Ludovic Courtès
This was suggested on several occasions, notably <https://bugs.gnu.org/24544>. * gnu/packages/ld-wrapper.in (%allow-impurities?): Default to #t and parse the value of 'GUIX_LD_WRAPPER_ALLOW_IMPURITIES'. * guix/build/gnu-build-system.scm (set-paths): Set 'GUIX_LD_WRAPPER_ALLOW_IMPURITIES'.
2018-03-29ld-wrapper: Don't talk about "impure library".Ludovic Courtès
* gnu/packages/ld-wrapper.in (rpath-arguments): Clarify message instead of saying "impure library".
2018-03-29ld-wrapper: Make sure debugging output goes through.Ludovic Courtès
* gnu/packages/ld-wrapper.in (ld-wrapper): Add call to 'force-output'.
2018-03-29gnu: libarchive: Add '-L' flags in 'libarchive.pc'.Ludovic Courtès
* gnu/packages/backup.scm (libarchive)[arguments]: Add 'add--L-in-libarchive-pc' phase.
2018-03-29Merge branch 'master' into core-updatesMarius Bakke
2018-03-29gnu: cmake: Update to 3.11.0.Marius Bakke
* gnu/packages/cmake.scm (cmake): Update to 3.11.0. [arguments]: Enable fixed test. Adjust file substitutions. Run tests and "./configure" in parallel. (cmake-3.11): Remove variable. * gnu/packages/storage.scm (ceph)[arguments]: Remove #:cmake.
2018-03-29gnu: r-mutationalpatterns: Update to 1.4.3.Roel Janssen
* gnu/packages/bioinformatics.scm (r-mutationalpatterns): Update to 1.4.3; [propagated-inputs]: Remove r-gridextra.
2018-03-29gnu: kaiju: Update to 1.6.2.Roel Janssen
* gnu/packages/bioinformatics.scm (kaiju): Update to 1.6.2; [inputs]: Add zlib.
2018-03-29gnu: Add duperemove.Vasile Dumitrascu
* gnu/packages/disk.scm (duperemove): New variable. Co-authored-by: Ludovic Courtès <ludovic.courtes@inria.fr>
2018-03-29gnu: Add python-debug.Ludovic Courtès
Suggested by Pjotr Prins <pjotr.public12@thebird.nl>. * gnu/packages/python.scm (python-debug): New variable.
2018-03-29gnu: nano: Update to 2.9.5.Efraim Flashner
* gnu/packages/nano.scm (nano): Update to 2.9.5.
2018-03-29gnu: libgpg-error: Update to 1.28.Marius Bakke
* gnu/packages/gnupg.scm (libgpg-error): Update to 1.28.
2018-03-29gnu: Add r-idr.Roel Janssen
* gnu/packages/cran.scm (r-idr): New variable.
2018-03-29gnu: Add r-amap.Roel Janssen
* gnu/packages/cran.scm (r-amap): New variable.
2018-03-29gnu: Add r-venndiagram.Roel Janssen
* gnu/packages/cran.scm (r-venndiagram): New variable.
2018-03-29gnu: Add r-pastecs.Roel Janssen
* gnu/packages/cran.scm (r-pastecs): New variable.
2018-03-29gnu: libusb4java: Adjust for building with libusb 1.0.22.Ricardo Wurmus
* gnu/packages/libusb.scm (libusb4java)[arguments]: Add phase to remove "-Werror" flag.
2018-03-29gnu: libusb-for-axoloti: Update patch.Ricardo Wurmus
* gnu/packages/patches/libusb-for-axoloti.patch: Update context for libusb 1.0.22.
2018-03-29gnu: tcl, tk: Update to 8.6.8.Marius Bakke
* gnu/packages/tcl.scm (tcl, tk): Update to 8.6.8.
2018-03-29gnu: python: Update to 3.6.5.Marius Bakke
* gnu/packages/python.scm (python-3.6): Update to 3.6.5.
2018-03-29gnu: icu4c: Update to 61.1.Marius Bakke
* gnu/packages/icu4c.scm (icu4c): Update to 61.1.
2018-03-29gnu: util-linux: Update to 2.32.Marius Bakke
* gnu/packages/patches/util-linux-tests.patch: Adjust context. * gnu/packages/patches/util-linux-CVE-2018-7738.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. * gnu/packages/linux.scm (util-linux): Update to 2.32. [source](patches): Remove 'util-linux-CVE-2018-7738.patch'.
2018-03-28gnu: node: Update to 9.10.0.Jelle Licht
* gnu/packages/node.scm (node): Update to 9.10.0.
2018-03-28gnu: http-parser: Update to 2.8.0.Jelle Licht
* gnu/packages/web.scm (http-parser): Update to 2.8.0.
2018-03-28gnu: xf86-video-ati: Update to 18.0.1.Marius Bakke
* gnu/packages/xorg.scm (xf86-video-ati): Update to 18.0.1.
2018-03-28gnu: xf86-input-libinput: Update to 0.27.0.Marius Bakke
* gnu/packages/xorg.scm (xf86-input-libinput): Update to 0.27.0.
2018-03-28gnu: ntp: Update to 4.2.8p11 [security-fixes].Leo Famulari
Fixes CVE-2016-1549 and CVE-2018-{7170,7182,7183,7184,7185}. * gnu/packages/ntp.scm (ntp): Update to 4.2.8p11.
2018-03-28gnu: openssl: Replace with OpenSSL 1.0.2o [fixes CVE-2018-0739].Leo Famulari
* gnu/packages/tls.scm (openssl)[replacement]: New field. (openssl-1.0.2o): New variable.
2018-03-28gnu: Add r-parsedate.Konrad Hinsen
* gnu/packages/cran.scm (r-parsedate): New variable. Signed-off-by: Ludovic Courtès <ludovic.courtes@inria.fr>
2018-03-28gnu: mu: Fix tests failures triggered by DST.Maxim Cournoyer
* gnu/packages/mail.scm (mu)[phases]: Add 'fix-date-tests. Signed-off-by: Ludovic Courtès <ludovic.courtes@inria.fr>
2018-03-28gnu: Add tcalc.Nadya Voronova
* gnu/packages/maths.scm (tcalc): New variables. Signed-off-by: Ludovic Courtès <ludovic.courtes@inria.fr>
2018-03-28gnu: culmus: Rename to font-culmus.Arun Isaac
* gnu/packages/fonts.scm (culmus): Rename to... (font-culmus): ...this. Re-indent.
2018-03-28gnu: culmus: Switch to font-build-system.Arun Isaac
* gnu/packages/fonts.scm (culmus): Switch to font-build-system. [arguments]: Replace system* with invoke.
2018-03-28gnu: font-linuxlibertine: Switch to font-build-system.Arun Isaac
* gnu/packages/fonts.scm (font-linuxlibertine): Switch to font-build-system. [arguments]: Replace system* with invoke.
2018-03-28gnu: font-lato: Switch to font-build-system.Arun Isaac
* gnu/packages/fonts.scm (font-lato): Switch to font-build-system. [source]: Use url-fetch/zipbomb.
2018-03-28gnu: openssl: Update to 1.0.2o.Mark H Weaver
* gnu/packages/tls.scm (openssl): Update to 1.0.2o. Remove snippet.
2018-03-28gnu: elogind: Fix build with glibc-2.27.Mark H Weaver
* gnu/packages/patches/elogind-glibc-2.27.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/freedesktop.scm (elogind)[source]: Add patch. [arguments]: Replace the bootstrap phase with what was previously the autogen phase.
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