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2022-06-13gnu: r-parallelly: Update to 1.32.0....* gnu/packages/cran.scm (r-parallelly): Update to 1.32.0. Ricardo Wurmus
2022-06-13gnu: r-rmpfr: Update to 0.8-9....* gnu/packages/cran.scm (r-rmpfr): Update to 0.8-9. Ricardo Wurmus
2022-06-13gnu: r-sodium: Update to 1.2.1....* gnu/packages/cran.scm (r-sodium): Update to 1.2.1. Ricardo Wurmus
2022-06-13gnu: r-admisc: Update to 0.28....* gnu/packages/cran.scm (r-admisc): Update to 0.28. Ricardo Wurmus
2022-06-13gnu: r-rgl: Update to 0.109.2....* gnu/packages/cran.scm (r-rgl): Update to 0.109.2. [propagated-inputs]: Add r-base64enc and r-mime. [native-inputs]: Add r-rmarkdown. Ricardo Wurmus
2022-06-13gnu: r-flextable: Update to 0.7.2....* gnu/packages/cran.scm (r-flextable): Update to 0.7.2. Ricardo Wurmus
2022-06-13gnu: r-officer: Update to 0.4.3....* gnu/packages/cran.scm (r-officer): Update to 0.4.3. Ricardo Wurmus
2022-06-13gnu: r-rdpack: Update to 2.3.1....* gnu/packages/cran.scm (r-rdpack): Update to 2.3.1. Ricardo Wurmus
2022-06-13gnu: r-ellipse: Update to 0.4.3....* gnu/packages/cran.scm (r-ellipse): Update to 0.4.3. Ricardo Wurmus
2022-06-13gnu: r-sna: Update to 2.7....* gnu/packages/cran.scm (r-sna): Update to 2.7. Ricardo Wurmus
2022-06-13gnu: r-processx: Update to 3.6.0....* gnu/packages/cran.scm (r-processx): Update to 3.6.0. Ricardo Wurmus
2022-06-13gnu: r-vcd: Update to 1.4-10....* gnu/packages/cran.scm (r-vcd): Update to 1.4-10. Ricardo Wurmus
2022-06-13gnu: r-ipred: Update to 0.9-13....* gnu/packages/cran.scm (r-ipred): Update to 0.9-13. Ricardo Wurmus
2022-06-13gnu: r-progressr: Update to 0.10.1....* gnu/packages/cran.scm (r-progressr): Update to 0.10.1. Ricardo Wurmus
2022-06-13gnu: r-bdsmatrix: Update to 1.3-6....* gnu/packages/cran.scm (r-bdsmatrix): Update to 1.3-6. Ricardo Wurmus
2022-06-13gnu: r-sp: Update to 1.5-0....* gnu/packages/cran.scm (r-sp): Update to 1.5-0. Ricardo Wurmus
2022-06-13gnu: r-proxy: Update to 0.4-27....* gnu/packages/cran.scm (r-proxy): Update to 0.4-27. Ricardo Wurmus
2022-06-13gnu: r-restrserve: Update to 1.2.0....* gnu/packages/cran.scm (r-restrserve): Update to 1.2.0. Ricardo Wurmus
2022-06-13gnu: r-benchmarkme: Update to 1.0.8....* gnu/packages/cran.scm (r-benchmarkme): Update to 1.0.8. [propagated-inputs]: Add r-stringr. Ricardo Wurmus
2022-06-13gnu: r-afpt: Update to 1.1.0.2....* gnu/packages/cran.scm (r-afpt): Update to 1.1.0.2. Ricardo Wurmus
2022-06-13gnu: r-nbpseq: Update to 0.3.1....* gnu/packages/bioconductor.scm (r-nbpseq): Update to 0.3.1. Ricardo Wurmus
2022-06-13gnu: r-restfulr: Update to 0.0.14....* gnu/packages/bioconductor.scm (r-restfulr): Update to 0.0.14. Ricardo Wurmus
2022-06-13gnu: Add js-mathjax-for-r-mathjaxr....* gnu/packages/patches/mathjax-3.1.2-no-a11y.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/javascript.scm (js-mathjax-for-r-mathjaxr): New variable. Ricardo Wurmus
2022-06-13gnu: python-asyncssh: Update to 2.11.0....* gnu/packages/ssh.scm (python-asyncssh)[version]: Update to 2.11.0. [propagated-inputs]: Add python-typing-extensions. [native-inputs]: Add python-fido2, python-aiofiles, netcat and python-pytest. [arguments]: Disable netcat autodetection. Replace 'check with call to pytest. Lars-Dominik Braun
2022-06-13gnu: Add python-langcodes....* gnu/packages/python-xyz.scm (python-langcodes): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Artyom V. Poptsov
2022-06-13gnu: racket: Avoid use of (ice-9 exceptions)....Fixes <https://issues.guix.gnu.org/54546>. Reported by Giovanni Biscuolo <g@xelera.eu> and Michael Chirillo <michael.a.chirillo@gmail.com>. * gnu/packages/racket.scm (racket): Rewrite in terms of SRFI-34/35 instead of (ice-9 exceptions). Ludovic Courtès
2022-06-13gnu: txr: Update to 277....* gnu/packages/lisp.scm (txr): Update to 277. [inputs]: Add zlib. Guillaume Le Vaillant
2022-06-13Merge branch 'staging'Ludovic Courtès
2022-06-13gnu: ungoogled-chromium: Update to 102.0.5005.115-1....* gnu/packages/chromium.scm (%chromium-version): Set to 102.0.5005.115. (%ungoogled-revision): Set to 1. (%ungoogled-origin, ungoogled-chromium): Update hash. Marius Bakke
2022-06-13gnu: LLVM, Clang, LLD: Update to 14.0.5....* gnu/packages/llvm.scm (llvm-14, clang-14, lld-14): Update to 14.0.5. (%llvm-monorepo-hashes, %llvm-patches): Adjust accordingly. Marius Bakke
2022-06-13gnu: uBlock Origin: Update to 1.43.0....* gnu/packages/browser-extensions.scm (ublock-origin): Update to 1.43.0. Marius Bakke
2022-06-12gnu: Add r-deconvr....* gnu/packages/bioconductor.scm (r-deconvr): New variable. Ricardo Wurmus
2022-06-12gnu: Add r-rsq....* gnu/packages/cran.scm (r-rsq): New variable. Ricardo Wurmus
2022-06-12Merge branch 'master' into stagingLudovic Courtès
2022-06-12gnu: Add emacs-corfu-doc-terminal....* gnu/packages/emacs-xyz.scm (emacs-corfu-doc-terminal): New variable. Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com> jgart
2022-06-12gnu: Add emacs-corfu-terminal....* gnu/packages/emacs-xyz.scm (emacs-corfu-terminal): New variable. Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com> jgart
2022-06-12gnu: llvm-14: Fix configure-flags for cross-compiling....* gnu/packages/llvm.scm (llvm-14)[arguments]: Fix syntax error in configure-flags when cross-compiling llvm. Efraim Flashner
2022-06-12gnu: zig: Limit to 64bit systems....* gnu/packages/zig.scm (zig)[supported-systems]: New field. Efraim Flashner
2022-06-12gnu: r-hdf5array: Update to 1.24.1....* gnu/packages/bioconductor.scm (r-hdf5array): Update to 1.24.1. Ricardo Wurmus
2022-06-12gnu: r-universalmotif: Update to 1.14.1....* gnu/packages/bioconductor.scm (r-universalmotif): Update to 1.14.1. Ricardo Wurmus
2022-06-12gnu: r-rsubread: Update to 2.10.2....* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.10.2. Ricardo Wurmus
2022-06-12gnu: r-clusterprofiler: Update to 4.4.2....* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.4.2. Ricardo Wurmus
2022-06-12gnu: r-monocle: Update to 2.24.1....* gnu/packages/bioconductor.scm (r-monocle): Update to 2.24.1. Ricardo Wurmus
2022-06-12gnu: r-chippeakanno: Update to 3.30.1....* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.30.1. Ricardo Wurmus
2022-06-12gnu: r-zellkonverter: Update to 1.6.2....* gnu/packages/bioconductor.scm (r-zellkonverter): Update to 1.6.2. Ricardo Wurmus
2022-06-12gnu: r-keggrest: Update to 1.36.2....* gnu/packages/bioconductor.scm (r-keggrest): Update to 1.36.2. Ricardo Wurmus
2022-06-12gnu: r-genomicfeatures: Update to 1.48.3....* gnu/packages/bioconductor.scm (r-genomicfeatures): Update to 1.48.3. Ricardo Wurmus
2022-06-12gnu: r-biocparallel: Update to 1.30.3....* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.30.3. [propagated-inputs]: Add r-codetools. Ricardo Wurmus
2022-06-12gnu: r-deepsnv: Update to 1.42.1....* gnu/packages/bioconductor.scm (r-deepsnv): Update to 1.42.1. Ricardo Wurmus
2022-06-12gnu: java-plexus-component-metadata: Fix package....* gnu/packages/java.scm (java-plexus-component-metadata): Apply fix for newer jdom. Julien Lepiller
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