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2022-10-03gnu: r-diffbind: Update to 3.6.4....* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.6.4. Ricardo Wurmus
2022-10-03gnu: r-zellkonverter: Update to 1.6.5....* gnu/packages/bioconductor.scm (r-zellkonverter): Update to 1.6.5. Ricardo Wurmus
2022-10-03gnu: r-limma: Update to 3.52.4....* gnu/packages/bioconductor.scm (r-limma): Update to 3.52.4. Ricardo Wurmus
2022-10-03gnu: r-genomicfeatures: Update to 1.48.4....* gnu/packages/bioconductor.scm (r-genomicfeatures): Update to 1.48.4. Ricardo Wurmus
2022-10-03gnu: r-genomeinfodb: Update to 1.32.4....* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.32.4. Ricardo Wurmus
2022-10-03gnu: r-gage: Update to 2.46.1....* gnu/packages/bioconductor.scm (r-gage): Update to 2.46.1. Ricardo Wurmus
2022-10-03gnu: r-complexheatmap: Update to 2.12.1....* gnu/packages/bioconductor.scm (r-complexheatmap): Update to 2.12.1. Ricardo Wurmus
2022-10-03gnu: r-chipseeker: Update to 1.32.1....* gnu/packages/bioconductor.scm (r-chipseeker): Update to 1.32.1. [propagated-inputs]: Add r-ggvenndiagram. Ricardo Wurmus
2022-10-03gnu: r-biostrings: Update to 2.64.1....* gnu/packages/bioconductor.scm (r-biostrings): Update to 2.64.1. Ricardo Wurmus
2022-10-03gnu: r-annotationforge: Update to 1.38.1....* gnu/packages/bioconductor.scm (r-annotationforge): Update to 1.38.1. Ricardo Wurmus
2022-10-03gnu: r-dearseq: Update to 1.8.4....* gnu/packages/bioconductor.scm (r-dearseq): Update to 1.8.4. Ricardo Wurmus
2022-10-03gnu: Remove ocaml-craml....The package doesn't build from source and is unmaintained according to its maintainer: https://github.com/realworldocaml/craml/pull/8#issuecomment-529235628. * gnu/packages/ocaml.scm (ocaml-craml): Delete variable. Maxim Cournoyer
2022-10-03gnu: r-spams: Update to 2.6.1....* gnu/packages/statistics.scm (r-spams): Update to 2.6.1. [source]: Migrate from gforge.inria.fr to gitlab.inria.fr, fetching from git. [phases]: Use gexps. {patch-paths, mkdist}: New phases. {no-mtune}: Delete trailing #t. [native-inputs]: New field. [home-page]: Update URL. Maxim Cournoyer
2022-10-03gnu: ocaml-dose3: Migrate from gforce.inria.fr....* gnu/packages/ocaml.scm (ocaml-dose3) [source]: Fetch from git from inill's gitlab instance. Maxim Cournoyer
2022-10-03gnu: Remove unused scotch patches....* gnu/packages/patches/scotch-build-parallelism.patch: Delete file. * gnu/packages/patches/scotch-integer-declarations.patch: Likewise. * gnu/local.mk (dist_patch_DATA): De-register them. Maxim Cournoyer
2022-10-03gnu: mpfi: Update to 1.5.4-1.b982534....* gnu/packages/multiprecision.scm (mpfi): Update to 1.5.4-1.b982534. [source]: Fetch from git and use latest commit available. [tests?]: Delete argument, enabling test suite. [phases]: New argument. [native-inputs]: New field. Maxim Cournoyer
2022-10-03gnu: mpfi: Use gexps and remove input labels....* gnu/packages/multiprecision.scm (mpfi) [source]: Re-indentation. [configure-flags]: Use gexps. [native-inputs]: Remove labels. Maxim Cournoyer
2022-10-03gnu: isl: Remove outdated comment....* gnu/packages/gcc.scm (isl) [source]: Remove outdated comment. Maxim Cournoyer
2022-10-03gnu: gappa: Honor TESTS?....* gnu/packages/algebra.scm (gappa) [phases] {check}: Honor TESTS?. Maxim Cournoyer
2022-10-03gnu: gappa: Update to 1.4.1....* gnu/packages/algebra.scm (gappa): Update to 1.4.1. [source]: Fetch from git. [arguments]: Use gexps. [phases]: Delete trailing #t. [native-inputs]: New field. Maxim Cournoyer
2022-10-03gnu: gmp-ecm: Update to 7.0.5....* gnu/packages/algebra.scm (gmp-ecm): Update to 7.0.5. [source]: Fetch from git from gitlab.inria.fr. [arguments]: Use gexps. [phases] {patch-paths}: New phase [native-inputs]: New field. [home-page]: Update URL. Maxim Cournoyer
2022-10-03gnu: gf2x: Update to 1.3.0....* gnu/packages/algebra.scm (gf2x): Update to 1.3.0. Maxim Cournoyer
2022-10-03gnu: gf2x: Migrate from gforge.inria.fr to gitlab.inria.fr....* gnu/packages/algebra.scm (gf2x) [source]: Fetch from git, adjust URL. [native-inputs]: Add autoconf, automake and libtool. [home-site]: Update URL. Maxim Cournoyer
2022-10-03gnu: emacs-ag: Do not propagate the-silver-searcher....* gnu/packages/emacs-xyz.scm (emacs-ag)[phases]: Add phase substitute-ag-path to avoid propagating ag. [inputs]: Add the-silver-searcher. [propagated-inputs]: Remove the-silver-searcher. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Michael Rohleder
2022-10-03gnu: emacs-ag: Use gexps....* gnu/packages/emacs-xyz.scm (emacs-ag)[phases]: Use gexps. {install-info}: Adjust for gexps. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Michael Rohleder
2022-10-02gnu: python-louvain: Fix test....* gnu/packages/graph.scm (python-louvain)[source]: Add patch. * gnu/packages/patches/python-louvain-fix-test.patch: New file. * gnu/local.mk (dist_patch_DATA): Register patch. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Greg Hogan
2022-10-02gnu: python-setools: Update to 4.4.0....* gnu/packages/selinux.scm (python-setools): Update to 4.4.0. [source, home-page]: Update url. [inputs]: Add python-pyqt. [native-inputs]: Add python-cython. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Greg Hogan
2022-10-02gnu: python-cfn-lint: Update to 0.65.0....* gnu/packages/python-web.scm (python-cfn-lint): Update to 0.65.0. [arguments]<#:phases>: Add 'skip-network-test. [propagated-inputs]: Add python-importlib-resources, python-jschema-to-python, python-sarif-om. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Greg Hogan
2022-10-02gnu: Add python-sarif-om....* gnu/packages/python-web.scm (python-sarif-om): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Greg Hogan
2022-10-02gnu: Add python-jschema-to-python....* gnu/packages/python-web.scm (python-jschema-to-python): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Greg Hogan
2022-10-02gnu: python-aws-sam-translator: Update to 1.51.0....* gnu/packages/python-web.scm (python-aws-sam-translator): Update to 1.51.0. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Greg Hogan
2022-10-02gnu: python-networkx: Update to 2.8.6....* gnu/packages/python-xyz.scm (python-networkx): Update to 2.8.6. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Greg Hogan
2022-10-02gnu: Add texlive-generic-xstring....* gnu/packages/tex.scm (texlive-generic-xstring): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Wiktor Żelazny
2022-10-02gnu: emacs-telega: Use tdlib-1.8.0...emacs-telega is compatible with the latest TDLib major release 1.8.0 * gnu/packages/emacs-xyz.scm: (emacs-telega) Use tdlib-1.8.0 instead of latest tdlib Signed-off-by: Ludovic Courtès <ludo@gnu.org> Giovanni Biscuolo
2022-10-02gnu: Add tdlib-1.8.0....This is needed for emacs-telega 0.8.3 * gnu/packages/messaging.scm (tdlib-1.8.0): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Giovanni Biscuolo
2022-10-02gnu: ffmpeg@4: Build against SDL2 2.0 so 'ffplay' gets built....Fixes <https://issues.guix.gnu.org/58090>. Reported by Zhu Zihao <all_but_last@163.com>. * gnu/packages/sdl.scm (sdl2-2.0): New variable. * gnu/packages/video.scm (ffmpeg-4)[inputs]: New field. Ludovic Courtès
2022-10-02gnu: emacs-scratch-el: Update source and homepage....* gnu/packages/emacs-xyz.scm (emacs-scratch-el)[source, homepage]: Update URL. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Michael Rohleder
2022-10-02gnu: pantalaimon: Update to 0.10.5....* gnu/packages/matrix.scm (pantalaimon): Update to 0.10.5. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Michael Rohleder
2022-10-02gnu: python-matrix-nio: Update to 0.20.0....* gnu/packages/matrix.scm (python-matrix-nio): Update to 0.20.0. [native-inputs]: Add python-pytest-asyncio. [propagated-inputs]: Changed python-jsonschema to python-jsonschema-next. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Michael Rohleder
2022-10-02gnu: python-aiohttp-socks: Update to 0.7.1....* gnu/packages/python-web.scm (python-aiohttp-socks): Update to 0.7.1. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Michael Rohleder
2022-10-02gnu: python-socks: Update to 2.0.3....* gnu/packages/python-web.scm (python-socks): Update to 2.0.3. [arguments]<#:phases>: Remove trailing #t. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Michael Rohleder
2022-10-02gnu: Add go-1.19....* gnu/packages/golang (go-1.19,go-std-1.19): New variables. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Hilton Chain
2022-10-02gnu: Add go-1.18....* gnu/packages/golang (go-1.18,go-std-1.18): New variables. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Hilton Chain
2022-10-02gnu: Add ghc-9.0....* gnu/packages/haskell.scm (ghc-9.0): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> itd
2022-10-02gnu: csound: Update to 6.16.2....* gnu/packages/audio.scm (csound): Update to 6.16.2. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Fulbert
2022-10-02gnu: units: Update to 2.22....* gnu/packages/maths.scm (units): Update to 2.22. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Mike Swanson
2022-10-02gnu: neovim: Update to 0.8.0....* gnu/packages/vim.scm (neovim): Update to 0.8.0. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> ギャラ
2022-10-02gnu: libvterm: Update to 0.3.0....* gnu/packages/terminals.scm (libvterm): Update to 0.3.0. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> ギャラ
2022-10-01gnu: ungoogled-chromium: Update to 106.0.5249.91-1....* gnu/packages/chromium.scm (%chromium-version): Set to 106.0.5249.91. (%ungoogled-origin, ungoogled-chromium): Update hashes. Marius Bakke
2022-10-01gnu: exercism: Remove input labels....* gnu/packages/education.scm (exercism)[inputs]: Remove input labels. Efraim Flashner
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