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2016-02-15gnu: Add slurm.Pjotr Prins
* gnu/packages/parallel.scm (slurm): New variable. * gnu/packages/patches/slurm-configure-remove-nonfree-contribs.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/parallel.scm: Introduce license name space. Co-authored-by: Andreas Enge <andreas@enge.fr>
2016-02-16gnu: prodigal: Update to 2.6.3.Ben Woodcroft
* gnu/packages/bioinformatics.scm (prodigal): Update to 2.6.3.
2016-02-15gnu: polkit-qt: Build with qt-5.Efraim Flashner
*gnu/packages/polkit.scm (polkit-qt)[propagated-inputs]: Use qt.
2016-02-15gnu: bazaar: Update to 2.7.0.Efraim Flashner
* gnu/packages/version-control.scm (bazaar): Update to 2.7.0.
2016-02-15gnu: r-annotationdbi: Update to 1.32.3.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.32.3.
2016-02-15gnu: Add audit.Ricardo Wurmus
* gnu/packages/admin.scm (audit): New variable.
2016-02-15gnu: vera: Update to 1.23.Efraim Flashner
* gnu/packages/dictionaries.scm (vera): Update to 1.23.
2016-02-15gnu: nano: Update to 2.5.2.Efraim Flashner
* gnu/packages/nano.scm (nano): Update to 2.5.2.
2016-02-15gnu: bitcoin-core: Update to 0.11.2.Efraim Flashner
* gnu/packages/finance.scm (bitcoin-core): Update to 0.11.2. [native-inputs]: Use python-2 instead of python-wrapper.
2016-02-15gnu: owncloud-client: Update to 2.1.1.Efraim Flashner
* gnu/packages/owncloud.scm (owncloud-client): Update to 2.1.1.
2016-02-15gnu: vsearch: Update to 1.10.0.Ben Woodcroft
* gnu/packages/bioinformatics.scm (vsearch): Update to 1.10.0. [origin]: Adapt to changes in bundling of cityhash.
2016-02-15gnu: cityhash: Install citycrc.h.Ben Woodcroft
* gnu/packages/textutils.scm (cityhash)[arguments]: Install citycrc.h. [version]: Use standardised format, increment to 1.1-2.
2016-02-15gnu: graphite2: Update to 1.3.5. Update home-page and source URI.Mark H Weaver
* gnu/packages/fontutils.scm (graphite2): Update to 1.3.5. [source, home-page]: Update to reflect upstream move to github.
2016-02-15gnu: libsndfile: Update to 1.0.26 [with follow-up fix CVE-2015-7805].Mark H Weaver
Note: The previous fix for CVE-2015-7805 was incomplete. * gnu/packages/patches/libsndfile-CVE-2014-9496.patch, gnu/packages/patches/libsndfile-CVE-2015-7805.patch: Delete files. * gnu-system.am (dist_patch_DATA): Remove them. * gnu/packages/pulseaudio.scm (libsndfile): Update to 1.0.26. [source]: Remove patches.
2016-02-15gnu: libgcrypt: Update to 1.6.5 [fixes CVE-2015-7511].Christopher Allan Webber
* gnu/packages/gnupg.scm (libgcrypt): Update to 1.6.5.
2016-02-14gnu: btrfs-progs: Fix license.Leo Famulari
Reported by Tobias Geerinckx-Rice <tobias.geerinckx.rice@gmail.com> * gnu/packages/linux.scm (btrfs-progs)[license]: Add GPL2 to list of licenses.
2016-02-14gnu: font-terminus: Update to 4.40Nils Gillmann
* gnu/packages/fonts.scm (font-terminus): Update to 4.40. Signed-off-by: Leo Famulari <leo@famulari.name>
2016-02-14gnu: python-ly: Update to 0.9.3.Andreas Enge
* gnu/packages/python.scm (python-ly): Update to 0.9.3.
2016-02-14gnu: lxqt: Update source URLs to use HTTPS.Mark H Weaver
* gnu/packages/lxqt.scm (libqtxdg, liblxqt, lxqt-common) (lxqt-session)[source]: Use HTTPS URLs.
2016-02-14gnu: openbox: Update to 3.6.1.Efraim Flashner
* gnu/packages/openbox.scm (openbox): Update to 3.6.1.
2016-02-14gnu: postgresql: Update to 9.3.11. [fixes ↵Efraim Flashner
CVE-2015-{5288,5289},CVE-2016-{0766,0773}] * gnu/packages/databases.scm (postgresql): Update to 9.3.11.
2016-02-13gnu: Add baobab.Jochem Raat
* gnu/packages/gnome.scm (baobab): New variable.
2016-02-13gnu: Add pianobar.Al McElrath
* gnu/packages/music.scm (pianobar): New variable. Signed-off-by: Leo Famulari <leo@famulari.name>
2016-02-13gnu: Add python-wtformsChristopher Allan Webber
* gnu/packages/python.scm (python-wtforms, python2-wtforms): New variables.
2016-02-13gnu: iproute: Update to 4.4.0.Alex Kost
* gnu/packages/linux.scm (iproute): Update to 4.4.0.
2016-02-13gnu: iproute: Use 'modify-phases'.Alex Kost
* gnu/packages/linux.scm (iproute)[arguments]: Use 'modify-phases'.
2016-02-13gnu: calibre: Update to 2.51.0.Andreas Enge
* gnu/packages/ebook.scm (calibre): Update to 2.51.0.
2016-02-13gnu: gnuplot: Update to 5.0.2.Andreas Enge
* gnu/packages/maths.scm (gnuplot): Update to 5.0.2.
2016-02-13gnu: lablgtk: Build cmxa libraries.Jan Nieuwenhuizen
* gnu/packages/ocaml.scm (lablgtk)[arguments]: Add the make target "opt" to also build *.cmxa files.
2016-02-13gnu: ocaml: Set search path.Jan Nieuwenhuizen
* gnu/packages/ocaml.scm (ocaml): Register OCAMLPATH as a search path.
2016-02-13gnu: Add ocaml-findlib.Jan Nieuwenhuizen
* gnu/packages/ocaml.scm (ocaml-findlib): New variable. * gnu/packages/patches/ocaml-findlib-make-install.patch: New file. * gnu-system.am (dist_patch_DATA): Register it.
2016-02-12gnu: gnupg: Add upstream fix for test failures on x86_64.Mark H Weaver
Fixes <https://debbugs.gnu.org/22558>. * gnu/packages/patches/gnupg-simple-query-ignore-status-messages.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/gnupg.scm (gnupg)[source]: Add patch.
2016-02-12gnu: Add tclxml.Jan Nieuwenhuizen
* gnu/packages/patches/tclxml-3.2-install.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/tcl.scm (tclxml): New variable. Signed-off-by: Leo Famulari <leo@famulari.name>
2016-02-12gnu: Split acme into python-acme and python2-acme.Leo Famulari
* gnu/packages/tls.scm (acme): Split variable into... (python-acme, python2-acme): ...both Python variants. (letsencrypt)[propagated-inputs]: Update user of renamed variable.
2016-02-12gnu: python-wheel: Define 'python2-variant'.Leo Famulari
* gnu/packages/python.scm (python-wheel)[properties]: New field. (python2-wheel): Use 'strip-python2-variant'. (python2-requests): Take the result of 'package-with-python2' directly. * gnu/packages/openstack.scm (python2-requests-mock): Likewise. (python2-oslosphinx): Likewise.
2016-02-12gnu: python-jsonschema: Define 'python2-variant'.Leo Famulari
* gnu/packages/python.scm (python-jsonschema)[properties]: New field. (python2-jsonschema): Use 'strip-python2-variant'. * gnu/packages/openstack.scm (python2-tempest-lib): Take the result of 'package-with-python2' directly.
2016-02-12gnu: python-cryptography: Define 'python2-variant'.Leo Famulari
* gnu/packages/python.scm (python-cryptography)[properties]: New field. (python2-cryptography): Use 'strip-python2-variant'. (python2-pyopenssl): Take the result of 'package-with-python2' directly.
2016-02-12gnu: Add tcllib.Jan Nieuwenhuizen
* gnu/packages/tcl.scm (tcllib): New variable. Signed-off-by: Leo Famulari <leo@famulari.name>
2016-02-12gnu: tcl: Use tcl/tk license.Jan Nieuwenhuizen
* gnu/packages/tcl.scm (tcl)[license]: Use the tcl/tk license variable. Signed-off-by: Leo Famulari <leo@famulari.name>
2016-02-12gnu: macs: Update to 2.1.0.20151222.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (macs): Update to 2.1.0.20151222.
2016-02-12gnu: macs: Use "pypi-uri".Ricardo Wurmus
* gnu/packages/bioinformatics.scm (macs)[source]: Use "pypi-uri" to build source URI.
2016-02-12gnu: python2-fastlmm: Update to 0.2.21.Ricardo Wurmus
* gnu/packages/python.scm (python2-fastlmm): Update to 0.2.21.
2016-02-12gnu: python2-pysnptools: Update to 0.3.5.Ricardo Wurmus
* gnu/packages/python.scm (python2-pysnptools): Update to 0.3.5.
2016-02-12gnu: python-numpy-bootstrap: Update to 1.10.4.Ricardo Wurmus
* gnu/packages/python.scm (python-numpy-bootstrap): Update to 1.10.4.
2016-02-12gnu: python-pandas: Update to 0.16.2.Ricardo Wurmus
* gnu/packages/python.scm (python-pandas): Update to 0.16.2.
2016-02-12gnu: Add gnunet-gtk.Ni* Gillmann
* gnu/packages/gnunet.scm (gnunet-gtk): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2016-02-12gnu: gnunet: Add gstreamer and plugins to inputs.Ricardo Wurmus
* gnu/packages/gnunet.scm (gnunet)[inputs]: Add "gstreamer" and "gst-plugins-base".
2016-02-11gnu: Add btrfs-progs.Tobias Geerinckx-Rice
* gnu/packages/linux.scm (btrfs-progs): New variable. Signed-off-by: Leo Famulari <leo@famulari.name>
2016-02-11Revert "gnu: nginx: Update to 1.9.11. [fixes CVE-2016-{0742, 0746, 0747}]"Mark H Weaver
This reverts commit 759246ad48c585621355e8c32bf3596ef9cd356f.
2016-02-11gnu: icecat: Update bundled graphite2 to 1.3.5 for security fixes.Mark H Weaver
* gnu/packages/patches/icecat-update-graphite2.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/gnuzilla.scm (icecat)[source]: Add patch. Add TODO comment about using the system graphite2 in the future.
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