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2019-09-05gnu: python-pyfaidx: Remove python-setuptools as an input.•••As this is provided by the build system, and I'm assuming that it's not necessary to have it as a propagated input. * gnu/packages/bioinformatics.scm (python-pyfaidx)[propagated-inputs]: Remove python-setuptools. Christopher Baines
2019-09-05gnu: umi-tools: Remove python-setuptools as an input.•••As this is provided by the build system. * gnu/packages/bioinformatics.scm (umi-tools)[inputs,native-inputs]: Remove python-setuptools. Christopher Baines
2019-09-05gnu: Syncthing: Update to 1.2.2.•••* gnu/packages/syncthing.scm (syncthing): Update to 1.2.2. [inputs]: Remove go-github-com-calmh-du and add go-github-com-shirou-gopsutil. Leo Famulari
2019-09-05gnu: Add go-github-com-shirou-gopsutil.•••* gnu/packages/syncthing.scm (go-github-com-shirou-gopsutil): New variable. Leo Famulari
2019-09-05gnu: go-github-com-urfave-cli: Update to 1.21.0.•••* gnu/packages/golang.scm (go-github-com-urfave-cli): Update to 1.21.0. Leo Famulari
2019-09-05gnu: emacs-org-contrib: Update to 20190904.•••* gnu/packages/emacs-xyz.scm (emacs-org-contrib): Update to 20190904. Nicolas Goaziou
2019-09-05gnu: emacs-org: Update to 9.2.6.•••* gnu/packages/emacs-xyz.scm (emacs-org): Update to 9.2.6. Nicolas Goaziou
2019-09-05gnu: emacs-org-caldav: Update to 0.0.0-1.•••* gnu/packages/emacs-xyz.scm (emacs-org-caldav): Update to latest commit, since there is no release yet. [description]: Remove alpha status, no longer specified in README. Nicolas Goaziou
2019-09-05Revert "gnu: next: Compress the executable."•••Some essential references (e.g. libfixposix) are lost in the process. This reverts commit 0e8b91dbc45306984d682307d8b40b0e323bb4be. Pierre Neidhardt
2019-09-05gnu: gama: Update to 2.07.•••* gnu/packages/gps.scm (gama): Update to 2.07. Efraim Flashner
2019-09-05gnu: bwa-meth: Capture one more reference to "bwa".•••Reported by: Alexander.Blume <Alexander.Blume@mdc-berlin.de> * gnu/packages/bioinformatics.scm (bwa-meth)[arguments]: Capture invocation of "bwa index" to retain reference to "bwa" package. Ricardo Wurmus
2019-09-05gnu: next: Compress the executable.•••* gnu/packages/web-browsers.scm (next)[arguments]: Compressing the executable brings it from about 95 MiB to 22 MiB. Pierre Neidhardt
2019-09-05gnu: emacs-evil-collection: Update to 0.0.2.•••* gnu/packages/emacs-xyz.scm (emacs-evil-collection): Update to 0.0.2. Pierre Neidhardt
2019-09-05gnu: Add r-bigmelon.•••* gnu/packages/bioconductor.scm (r-bigmelon): New variable. Ricardo Wurmus
2019-09-05gnu: Add r-gdsfmt.•••* gnu/packages/bioconductor.scm (r-gdsfmt): New variable. Ricardo Wurmus
2019-09-05gnu: Add r-watermelon.•••* gnu/packages/bioconductor.scm (r-watermelon): New variable. Ricardo Wurmus
2019-09-05gnu: Add r-illuminahumanmethylation450kanno-ilmn12-hg19.•••* gnu/packages/bioconductor.scm (r-illuminahumanmethylation450kanno-ilmn12-hg19): New variable. Ricardo Wurmus
2019-09-05gnu: Add r-roc.•••* gnu/packages/bioconductor.scm (r-roc): New variable. Ricardo Wurmus
2019-09-05gnu: efl: Update to 1.22.4.•••* gnu/packages/enlightenment.scm (efl): Update to 1.22.4. Efraim Flashner
2019-09-05gnu: sbcl: Use CLISP instead of unboostrappable CCL to build.•••* gnu/packages/lisp.scm (sbcl)[arguments]: Build with CLISP. Pierre Neidhardt
2019-09-05gnu: sbcl: Update to 1.5.6.•••* gnu/packages/lisp.scm (sbcl): Update to 1.5.6. Pierre Neidhardt
2019-09-05gnu: dolphin-emu: Update to commit a974540.•••* gnu/packages/emulators.scm (dolphin-emu): Update to commit a974540. [source]: Delete unneeded MoltenVK map. [arguments]: Properly hardcode libvulkan path. Rutger Helling
2019-09-05gnu: docker: Add support for tini.•••* gnu/packages/docker.scm (docker)[inputs]: Add tini. [phases]{patch-paths}: Patch the path of the default init binary. Maxim Cournoyer
2019-09-05gnu: Add tini.•••* gnu/packages/docker.scm (tini): New variable. Maxim Cournoyer
2019-09-05gnu: nginx: Update to 1.17.3 [security fixes].•••This release fixes CVE-2019-9511, CVE-2019-9513, and CVE-2019-9516. * gnu/packages/web.scm (nginx): Update to 1.17.3. Marius Bakke
2019-09-05gnu: miniupnpc: Update to 2.1.20190824.•••* gnu/packages/upnp.scm (miniupnpc): Update to 2.1.20190824. Marius Bakke
2019-09-05gnu: varnish: Update to 6.2.1.•••* gnu/packages/web.scm (varnish): Update to 6.2.1. Marius Bakke
2019-09-05gnu: libnl: Update to 3.5.0.•••* gnu/packages/linux.scm (libnl): Update to 3.5.0. Marius Bakke
2019-09-05gnu: samba: Update to 4.10.8 [fixes CVE-2019-10197].•••* gnu/packages/samba.scm (samba): Update to 4.10.8. Marius Bakke
2019-09-05gnu: tevent: Update to 0.10.1.•••* gnu/packages/samba.scm (tevent): Update to 0.10.1. Marius Bakke
2019-09-05gnu: talloc: Update to 2.3.0.•••* gnu/packages/samba.scm (talloc): Update to 2.3.0. Marius Bakke
2019-09-05gnu: tdb: Update to 1.4.2.•••* gnu/packages/databases.scm (tdb): Update to 1.4.2. Marius Bakke
2019-09-05gnu: libvisio: Update to 0.1.7.•••* gnu/packages/libreoffice.scm (libvisio): Update to 0.1.7. Marius Bakke
2019-09-05gnu: libabw: Update to 0.1.3.•••* gnu/packages/libreoffice.scm (libabw): Update to 0.1.3. [arguments]: Remove. Marius Bakke
2019-09-05gnu: LibRaw: Update to 1.19.5.•••* gnu/packages/photo.scm (libraw): Update to 0.19.5. Marius Bakke
2019-09-05gnu: php: Build against Oniguruma 6.•••* gnu/packages/php.scm (php)[inputs]: Change ONIGURUMA-5 to ONIGURUMA. * gnu/packages/textutils.scm (oniguruma-5): Remove variable. Marius Bakke
2019-09-05gnu: oniguruma: Update to 6.9.3 [fixes CVE-2019-13224, CVE-2019-13225].•••* gnu/packages/textutils.scm (oniguruma): Update to 6.9.3. Marius Bakke
2019-09-04gnu: libxfce4util: Build Vala bindings.•••* gnu/packages/xfce.scm (libxfce4util)[native-inputs]: Add vala. Signed-off-by: Ludovic Courtès <ludo@gnu.org> L p R n d n
2019-09-04gnu: libxfce4util: Add gobject-introspection support.•••* gnu/packages/xfce.scm (libxfce4util): Add gobject-introspection to native-inputs. Signed-off-by: Ludovic Courtès <ludo@gnu.org> L p R n d n
2019-09-04gnu: Add xfce4-screensaver.•••* gnu/packages/xfce.scm (xfce4-screensaver): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> L p R n d n
2019-09-04gnu: Add xfce4-screenshooter.•••* gnu/packages/xfce.scm (xfce4-screenshooter): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> L p R n d n
2019-09-04gnu: ghostscript: Keep the replacement private.•••This avoids having two matches for the "ghostscript" spec. * gnu/packages/ghostscript.scm (ghostscript/fixed): Keep private. Ludovic Courtès
2019-09-04gnu: ocaml-easy-format: Update to 1.3.2.•••* gnu/packages/ocaml.scm (ocaml-easy-format): Update to 1.3.2. Julien Lepiller
2019-09-04gnu: ocaml-frontc: Update to 3.4.2.•••* gnu/packages/ocaml.scm (ocaml-frontc): Update to 3.4.2. Julien Lepiller
2019-09-04gnu: ocaml-ssl: Update to 0.5.9.•••* gnu/packages/ocaml.scm (ocaml-ssl): Update to 0.5.9. Julien Lepiller
2019-09-04gnu: opam: Update to 2.0.5.•••* gnu/packages/ocaml.scm (opam): Update to 2.0.5. Julien Lepiller
2019-09-04gnu: ocaml-stringext: Update to 1.6.0.•••* gnu/packages/ocaml.scm (ocaml-stringext): Update to 1.6.0. Julien Lepiller
2019-09-04gnu: ocaml-markup: Update to 0.8.1.•••* gnu/packages/ocaml.scm (ocaml-markup): Update to 0.8.1. (ocaml-bisect-ppx): Use propagated-inputs instead of inputs. Julien Lepiller
2019-09-04gnu: ocaml-lwt-log: Update to 1.1.1.•••* gnu/packages/ocaml.scm (ocaml-lwt-log): Update to 1.1.1. [source]: Use git-fetch. Julien Lepiller
2019-09-04gnu: ocaml-biniou: Update to 1.2.1.•••* gnu/packages/ocaml.scm (ocaml-biniou): Update to 1.2.1. Julien Lepiller
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