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2019-09-15gnu: Add r-wavcluster....* gnu/packages/bioconductor.scm (r-wavcluster): New variable. Ricardo Wurmus
2019-09-15gnu: r-spam: Update to 2.3-0....* gnu/packages/cran.scm (r-spam): Update to 2.3-0. Ricardo Wurmus
2019-09-15gnu: r-feather: Update to 0.3.5....* gnu/packages/cran.scm (r-feather): Update to 0.3.5. Ricardo Wurmus
2019-09-15gnu: emacs-zerodark-theme: Update to 4.6....* gnu/packages/emacs-xyz.scm (emacs-zerodark-theme): Update to 4.6. [source]: Update to new source uri. Giacomo Leidi
2019-09-15gnu: Add yubico-pam....* gnu/packages/authentication.scm (yubico-pam): New variable. Ricardo Wurmus
2019-09-14gnu: r-delayedmatrixstats: Update to 1.6.1....* gnu/packages/bioinformatics.scm (r-delayedmatrixstats): Update to 1.6.1. Ricardo Wurmus
2019-09-14gnu: r-rhdf5lib: Update to 1.6.1....* gnu/packages/bioinformatics.scm (r-rhdf5lib): Update to 1.6.1. Ricardo Wurmus
2019-09-14gnu: r-rtracklayer: Update to 1.44.4....* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.44.4. Ricardo Wurmus
2019-09-14gnu: r-genomicranges: Update to 1.36.1....* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.36.1. Ricardo Wurmus
2019-09-14gnu: r-s4vectors: Update to 0.22.1....* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.22.1. Ricardo Wurmus
2019-09-14gnu: r-mixomics: Update to 6.8.4....* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.8.4. Ricardo Wurmus
2019-09-14gnu: r-gtrellis: Update to 1.16.1....* gnu/packages/bioconductor.scm (r-gtrellis): Update to 1.16.1. Ricardo Wurmus
2019-09-14gnu: r-regioner: Update to 1.16.4....* gnu/packages/bioconductor.scm (r-regioner): Update to 1.16.4. Ricardo Wurmus
2019-09-14gnu: Add emacs-elixir-mode....* gnu/packages/emacs-xyz.scm (emacs-elixir-mode): New variable. Björn Höfling
2019-09-14gnu: wine-staging: Update to 4.16....* gnu/packages/wine.scm (wine-staging-patchset-data): Update to 4.16. * gnu/packages/wine.scm (wine-staging): Update to 4.16. Rutger Helling
2019-09-14gnu: r-tidyr: Update to 1.0.0....* gnu/packages/statistics.scm (r-tidyr): Update to 1.0.0. [propagated-inputs]: Add r-ellipsis, r-lifecycle, and r-vctrs. Ricardo Wurmus
2019-09-14gnu: r-diffusionmap: Update to 1.2.0....* gnu/packages/graph.scm (r-diffusionmap): Update to 1.2.0. Ricardo Wurmus
2019-09-14gnu: r-seqinr: Update to 3.6-1....* gnu/packages/cran.scm (r-seqinr): Update to 3.6-1. Ricardo Wurmus
2019-09-14gnu: Add r-lifecycle....* gnu/packages/cran.scm (r-lifecycle): New variable. Ricardo Wurmus
2019-09-14gnu: r-huge: Update to 1.3.3....* gnu/packages/cran.scm (r-huge): Update to 1.3.3. Ricardo Wurmus
2019-09-14gnu: r-tidytree: Update to 0.2.7....* gnu/packages/cran.scm (r-tidytree): Update to 0.2.7. Ricardo Wurmus
2019-09-14gnu: r-activity: Update to 1.3....* gnu/packages/cran.scm (r-activity): Update to 1.3. [propagated-inputs]: Add r-insol. Ricardo Wurmus
2019-09-14gnu: r-sjplot: Update to 2.7.1....* gnu/packages/cran.scm (r-sjplot): Update to 2.7.1. Ricardo Wurmus
2019-09-14gnu: r-sjstats: Update to 0.17.6....* gnu/packages/cran.scm (r-sjstats): Update to 0.17.6. [propagated-inputs]: Add r-parameters. Ricardo Wurmus
2019-09-14gnu: r-emmeans: Update to 1.4.1....* gnu/packages/cran.scm (r-emmeans): Update to 1.4.1. Ricardo Wurmus
2019-09-14gnu: r-sjlabelled: Update to 1.1.1....* gnu/packages/cran.scm (r-sjlabelled): Update to 1.1.1. Ricardo Wurmus
2019-09-14gnu: r-circlize: Update to 0.4.8....* gnu/packages/cran.scm (r-circlize): Update to 0.4.8. Ricardo Wurmus
2019-09-14gnu: r-httpuv: Update to 1.5.2....* gnu/packages/cran.scm (r-httpuv): Update to 1.5.2. Ricardo Wurmus
2019-09-14gnu: Add r-insol....* gnu/packages/cran.scm (r-insol): New variable. Ricardo Wurmus
2019-09-14gnu: Add r-rgdal....* gnu/packages/cran.scm (r-rgdal): New variable. Ricardo Wurmus
2019-09-14gnu: Add r-parameters....* gnu/packages/cran.scm (r-parameters): New variable. Ricardo Wurmus
2019-09-13gnu: gnujump: Add desktop file....This fixes bug#37069. * gnu/packages/games.scm (gnujump)[arguments]: Add custom 'create-desktop-entry phase to install a desktop file. Efraim Flashner
2019-09-13gnu: tipp10: Fix path in desktop entry....* gnu/packages/patches/tipp10-fix-compiling.patch: Remove changes to hardcode executable path. Efraim Flashner
2019-09-13gnu: gmsh: Update home page....This addresses a 'guix lint' warning. * gnu/packages/maths.scm (gmsh)[home-page]: Update to avoid URL redirection. Paul Garlick
2019-09-13gnu: mcron: Update to 1.1.2....* gnu/packages/guile-xyz.scm (mcron): Update to 1.1.2. [arguments]: Remove custom 'set-timezone phase. [native-inputs]: Add autoconf, automake, help2man, texinfo. [inputs]: Remove ed, which. Efraim Flashner
2019-09-13gnu: shellutils.scm: Sort module inputs....* gnu/packages/shellutils.scm: Sort module inputs alphabetically. Efraim Flashner
2019-09-13gnu: Add zsh-autosuggestions....* gnu/packages/shellutils.scm (zsh-autosuggestions): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Collin J. Doering
2019-09-13gnu: Add ruby-rspec-wait....* gnu/packages/ruby.scm (ruby-rspec-wait): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Collin J. Doering
2019-09-13gnu: Add sh-z shell tool...* gnu/packages/shellutils.scm (sh-z): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Collin J. Doering
2019-09-13gnu: Thunar: Update to 1.8.9....* gnu/packages/xfce.scm (thunar): Update to 1.8.9. Signed-off-by: Ludovic Courtès <ludo@gnu.org> L p R n d n
2019-09-13gnu: openblas: Set 'NUM_THREADS'....Until now, OpenBLAS would use at most the N threads, where N is the number of cores that happened to be available on the build machine (typically N=8). * gnu/packages/maths.scm (openblas/fixed-num-threads): New variable. (openblas)[replacement]: New field. (openblas-ilp64): Use 'package/inherit'. Ludovic Courtès
2019-09-13gnu: python-matplotlib-documentation: Add missing input....* gnu/packages/python-xyz.scm (python-matplotlib-documentation)[native-inputs]: Add python-sphinx-copybutton. (python2-matplotlib-documentation)[native-inputs]: Remove python-sphinx-copybutton. Ricardo Wurmus
2019-09-13gnu: Add python-sphinx-copybutton....* gnu/packages/sphinx.scm (python-sphinx-copybutton): New variable. Ricardo Wurmus
2019-09-13gnu: python-matplotlib: Update to 3.1.1....* gnu/packages/python-xyz.scm (python-matplotlib): Update to 3.1.1. [native-inputs]: Remove python-nose; add python-pytest and unzip; add jquery-ui. [arguments]: Add build phases "fix-and-disable-failing-tests" and "install-jquery-ui", and move the "check" phase after the "install" phase; use the default backend in setup.cfg. (python2-matplotlib): Keep at version 2.2.3. (python-matplotlib-documentation)[arguments]: Remove "check" phase. Ricardo Wurmus
2019-09-13gnu: Add r-assertr....* gnu/packages/cran.scm (r-assertr): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Wiktor Żelazny
2019-09-12gnu: emacs-interactive-align: Update to 0.4.2....* gnu/packages/emacs-xyz.scm (emacs-interactive-align): Update to 0.4.2. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Brian Leung
2019-09-12gnu: Add emacs-doom-themes....* gnu/packages/emacs-xyz.scm (emacs-doom-themes): New variable. Co-authored-by: Brett Gilio <brettg@posteo.net> Signed-off-by: Ludovic Courtès <ludo@gnu.org> Tim Gesthuizen
2019-09-12gnu: gmsh: Fetch source from Git....* gnu/packages/maths.scm (gmsh)[source]: Switch to GIT-FETCH. Paul Garlick
2019-09-13gnu: python-pytest-virtualenv: Enable tests....* gnu/packages/python-check.scm (python-pytest-virtualenv) [phases]{patch-virtualenv-executable}: New phase. [propagated-inputs]: Move python-virtualenv from here... [inputs]: ...to here. Maxim Cournoyer
2019-09-13gnu: python-pathpy: Add a missing propagated input....This fixes the build of 'python-pytest-shutil', amongst others. * gnu/packages/python-xyz.scm (python-pathpy)[propagated-inputs]: Add python-importlib-metadata. Maxim Cournoyer
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