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2023-07-12gnu: r-rcpp: Update to 1.0.11....* gnu/packages/cran.scm (r-rcpp): Update to 1.0.11. Ricardo Wurmus
2023-07-12gnu: r-pkgload: Update to 1.3.2.1....* gnu/packages/cran.scm (r-pkgload): Update to 1.3.2.1. Ricardo Wurmus
2023-07-12gnu: r-pkgbuild: Update to 1.4.2....* gnu/packages/cran.scm (r-pkgbuild): Update to 1.4.2. [propagated-inputs]: Remove r-withr. Ricardo Wurmus
2023-07-12gnu: r-ggtern: Update to 3.4.2....* gnu/packages/cran.scm (r-ggtern): Update to 3.4.2. Ricardo Wurmus
2023-07-12gnu: r-fastdummies: Update to 1.7.3....* gnu/packages/cran.scm (r-fastdummies): Update to 1.7.3. Ricardo Wurmus
2023-07-12gnu: r-curl: Update to 5.0.1....* gnu/packages/cran.scm (r-curl): Update to 5.0.1. Ricardo Wurmus
2023-07-12gnu: r-jsonlite: Update to 1.8.7....* gnu/packages/cran.scm (r-jsonlite): Update to 1.8.7. [native-inputs]: Add r-r-rsp. Ricardo Wurmus
2023-07-12gnu: r-readxl: Update to 1.4.3....* gnu/packages/cran.scm (r-readxl): Update to 1.4.3. Ricardo Wurmus
2023-07-12gnu: r-ecp: Update to 3.1.5....* gnu/packages/cran.scm (r-ecp): Update to 3.1.5. Ricardo Wurmus
2023-07-12gnu: r-ggpmisc: Update to 0.5.3....* gnu/packages/cran.scm (r-ggpmisc): Update to 0.5.3. Ricardo Wurmus
2023-07-12gnu: r-googlesheets4: Update to 1.1.1....* gnu/packages/cran.scm (r-googlesheets4): Update to 1.1.1. Ricardo Wurmus
2023-07-12gnu: r-googledrive: Update to 2.1.1....* gnu/packages/cran.scm (r-googledrive): Update to 2.1.1. Ricardo Wurmus
2023-07-12gnu: r-datawizard: Update to 0.8.0....* gnu/packages/cran.scm (r-datawizard): Update to 0.8.0. Ricardo Wurmus
2023-07-12gnu: r-ggpicrust2: Update to 1.7.1....* gnu/packages/bioconductor.scm (r-ggpicrust2): Update to 1.7.1. [propagated-inputs]: Remove r-phyloseq; add r-ggh4x. Ricardo Wurmus
2023-07-12gnu: r-scistreer: Update to 1.2.0....* gnu/packages/bioconductor.scm (r-scistreer): Update to 1.2.0. Ricardo Wurmus
2023-07-12gnu: r-numbat: Update to 1.3.2-1....* gnu/packages/bioconductor.scm (r-numbat): Update to 1.3.2-1. Ricardo Wurmus
2023-07-12gnu: r-biomartr: Update to 1.0.4....* gnu/packages/bioconductor.scm (r-biomartr): Update to 1.0.4. Ricardo Wurmus
2023-07-12gnu: apache-arrow: Update to 12.0.1....* gnu/packages/databases.scm (apache-arrow): Update to 12.0.1. Ricardo Wurmus
2023-07-12gnu: r-mlr3: Update to 0.16.1....* gnu/packages/cran.scm (r-mlr3): Update to 0.16.1. Ricardo Wurmus
2023-07-12gnu: r-igraph: Update to 1.5.0....* gnu/packages/cran.scm (r-igraph): Update to 1.5.0. [propagated-inputs]: Add r-cli. Ricardo Wurmus
2023-07-12gnu: r-terra: Update to 1.7-39....* gnu/packages/cran.scm (r-terra): Update to 1.7-39. [inputs]: Add curl, openssh, openssl, and pcre2. Ricardo Wurmus
2023-07-12gnu: r-leidenalg: Update to 1.1.0....* gnu/packages/cran.scm (r-leidenalg): Update to 1.1.0. [properties]: Add hint for updater to keep gmp as input. Ricardo Wurmus
2023-07-12gnu: Add r-envstats....* gnu/packages/cran.scm (r-envstats): New variable. Ricardo Wurmus
2023-07-12gnu: r-gmp: Update to 0.7-2....* gnu/packages/cran.scm (r-gmp): Update to 0.7-2. [arguments]: Remove obsolete build phase. [properties]: Tell updater that "gmp" is an extra input. Ricardo Wurmus
2023-07-12gnu: r-haven: Update to 2.5.3....* gnu/packages/cran.scm (r-haven): Update to 2.5.3. [properties]: Declare readstat as an extra input. [native-inputs]: Add pkg-config. Ricardo Wurmus
2023-07-12gnu: r-gprofiler2: Update to 0.2.2....* gnu/packages/cran.scm (r-gprofiler2): Update to 0.2.2. [native-inputs]: Add r-rmarkdown. Ricardo Wurmus
2023-07-12gnu: r-v8: Update to 4.3.2....* gnu/packages/cran.scm (r-v8): Update to 4.3.2. [properties]: Declare libnode as an extra input, not an ignored input. Ricardo Wurmus
2023-07-12gnu: r-lme4: Update to 1.1-34....* gnu/packages/statistics.scm (r-lme4): Update to 1.1-34. Ricardo Wurmus
2023-07-12gnu: r-digest: Update to 0.6.33....* gnu/packages/statistics.scm (r-digest): Update to 0.6.33. [native-inputs]: Add r-simplermarkdown. Ricardo Wurmus
2023-07-12gnu: r-plotly: Update to 4.10.2....* gnu/packages/statistics.scm (r-plotly): Update to 4.10.2. Ricardo Wurmus
2023-07-12gnu: r-opencpu: Update to 2.2.10....* gnu/packages/cran.scm (r-opencpu): Update to 2.2.10. [properties]: Add hints for updater. Ricardo Wurmus
2023-07-12gnu: r-rgl: Update to 1.2.1....* gnu/packages/cran.scm (r-rgl): Update to 1.2.1. [properties]: Tell updater to not remove glu and libx11. Ricardo Wurmus
2023-07-12gnu: r-bslib: Update to 0.5.0....* gnu/packages/cran.scm (r-bslib): Update to 0.5.0. [source]: Delete minified JavaScript for components. [arguments]: Update 'process-javascript phase to generate components from source. [native-inputs]: Add typescript-components. Ricardo Wurmus
2023-07-11gnu: rr: Fix typo in synopsis....* gnu/packages/debug.scm (rr) [synopsis]: Fix typo. jgart
2023-07-11gnu: keepassxc: Fix broken home-page url....* gnu/packages/password-utils.scm (keepassxc): Fix broken url. [home-page]: Fix broken url. jgart
2023-07-11gnu: nix: Update to 2.16.1....* gnu/packages/package-management.scm (nix): Update to 2.16.1. [source]: Use HTTPS for package source. [inputs]: Add nlohmann-json. [native-inputs]: Add rapidcheck. [arguments]<#:phases>: In phase "check", change the value of environment variable "NIX_STORE" to "/nix/store" temporarily. * gnu/packages/patches/nix-dont-build-html-doc.diff: Update. Co-authored-by: jgart <jgart@dismail.de> Zhu Zihao
2023-07-11gnu: Add rapidcheck....* gnu/packages/check.scm (rapidcheck): New variable. Zhu Zihao
2023-07-11gnu: Add python-redo....* gnu/packages/python-xyz.scm (python-redo): New variable. AwesomeAdam54321
2023-07-11gnu: Add python-cloup....* gnu/packages/python-xyz.scm (python-cloup): New variable. Co-authored-by: jgart <jgart@dismail.de> Daniel Meißner
2023-07-11gnu: rocm: Update to 5.6.0....Update all of the ROCm packages at the same time as they share a version number and should be upgraded together, including llvm-for-rocm. * gnu/packages/llvm.scm (llvm-for-rocm): Update to 5.6.0. [source]{patches}: Remove unneeded patches (linkdl and remove-isystem-usr-include). * gnu/packages/rocm.scm (rocm-cmake, roct-thunk-interface): Update to 5.6.0. (rocclr-src): Update to 5.6.0. [source]{patches}: Add enable-gfx800 patch. (rocm-device-libs): Update to 5.6.0. [inputs]: Update style. (rocm-comgr): Update to 5.6.0. [inputs]: Remove lld. Update style. (rocr-runtime): Update to 5.6.0. [arguments]: Use gexps. Remove configure-flags. Add add-rocm-device-lib-path phase. [inputs]: Add libdrm. Update style. [native-inputs]: Add pkg-config. Update style. (rocm-opencl-runtime): Update to 5.6.0. [source]{patches}: Remove noopencl patch. [arguments]{configure-flags}: Add BUILD_ICD=OFF and FILE_REORG_BACKWARD_COMPATIBILITY=OFF flags. [inputs]: Add opencl-headers. (rocminfo): Update to 5.6.0. [arguments]: Use gexps. Use search-input-file instead of assoc-ref and which. (rocm-bandwidth-test): Update to 5.6.0. [source]{patches}: Add fix-includes patch. * gnu/packages/patches/rocm-comgr-3.1.0-dependencies.patch, gnu/packages/patches/rocm-opencl-runtime-4.3-noclinfo.patch: Update patches. * gnu/packages/patches/llvm-roc-4.0.0-remove-isystem-usr-include.patch, gnu/packages/patches/llvm-roc-5.0.0-linkdl.patch, gnu/packages/patches/rocm-opencl-runtime-4.3-noopencl.patch: Delete files. * gnu/packages/patches/rocm-bandwidth-test-5.5.0-fix-includes.patch, gnu/packages/patches/rocclr-5.6.0-enable-gfx800.patch: New files. * gnu/local.mk (dist_patch_DATA): Update patches. John Kehayias
2023-07-11gnu: Add emacs-sakura-theme....* gnu/packages/emacs-xyz.scm (emacs-sakura-theme): New variable. Signed-off-by: Andrew Tropin <andrew@trop.in> Ahmad Draidi
2023-07-11gnu: Add emacs-abyss-theme....* gnu/packages/emacs-xyz.scm (emacs-abyss-theme): New variable. Signed-off-by: Andrew Tropin <andrew@trop.in> Ahmad Draidi
2023-07-11gnu: Add emacs-starlit-theme....* gnu/packages/emacs-xyz.scm (emacs-starlit-theme): New variable. Signed-off-by: Andrew Tropin <andrew@trop.in> Ahmad Draidi
2023-07-11gnu: emacs-dumbparens: Update to 0-1.59bb5ae....* gnu/packages/emacs-xyz.scm (emacs-dumbparens): Update to 0-1.59bb5ae. [source]: Download from new upstream URL. [home-page]: Use new home-page. Signed-off-by: Andrew Tropin <andrew@trop.in> Ahmad Draidi
2023-07-11gnu: emacs-scroll-on-drag: Update to 0.1-2.179c2ac....* gnu/packages/emacs-xyz.scm (emacs-scroll-on-drag): Update to 0.1-2.179c2ac. [source]: Download from new upstream URL. [home-page]: Use new home-page. Signed-off-by: Andrew Tropin <andrew@trop.in> Ahmad Draidi
2023-07-11gnu: emacs-mode-line-idle: Update to 0.2-0.1dc0115....* gnu/packages/emacs-xyz.scm (emacs-mode-line-idle): Update to 0.2-0.1dc0115. [source]: Download from new upstream URL. [home-page]: Use new home-page. Signed-off-by: Andrew Tropin <andrew@trop.in> Ahmad Draidi
2023-07-11gnu: emacs-undo-fu-session: Update to 0.6-0.a6c4f73....* gnu/packages/emacs-xyz.scm (emacs-undo-fu-session): Update to 0.6-0.a6c4f73. [source]: Download from new upstream URL. [arguments]: Update #:test-command. Fix tests by adding '--eval (setq undo-fu-session-ignore-temp-files nil)' to #:test-command. [home-page]: Use new home-page. Signed-off-by: Andrew Tropin <andrew@trop.in> Ahmad Draidi
2023-07-11gnu: emacs-undo-fu: Update to 0.5-0.0e22308....* gnu/packages/emacs-xyz.scm (emacs-undo-fu): Update to 0.5-0.0e22308. [source]: Download from new upstream URL. [home-page]: Use new home-page. Signed-off-by: Andrew Tropin <andrew@trop.in> Ahmad Draidi
2023-07-11gnu: emacs-spell-fu: Update to 0.3-1.67a26b7....* gnu/packages/emacs-xyz.scm (emacs-spell-fu): Update to 0.3-1.67a26b7. [source]: Download from new upstream URL. [home-page]: Use new home-page. Signed-off-by: Andrew Tropin <andrew@trop.in> Ahmad Draidi
2023-07-11gnu: gnuplot: Update to 5.4.8....* gnu/packages/maths.scm (gnuplot): Update to 5.4.8. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Paul A. Patience