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2021-12-13gnu: binutils@2.33: Remove non-applicable patches.Ludovic Courtès
* gnu/packages/base.scm (binutils-2.33)[source]: Add empty 'patches' field.
2021-12-13gnu: python-aws-xray-sdk: Set PYTHONPATH when running tests.Ludovic Courtès
* gnu/packages/python-web.scm (python-aws-xray-sdk)[arguments]: Check: Set PYTHONPATH.
2021-12-13gnu: python-jsonpickle: Update to 1.5.2.Ludovic Courtès
This brings support for NumPy 1.20+, which we need. * gnu/packages/python-web.scm (python-jsonpickle): Update to 1.5.2.
2021-12-13gnu: python-jose: Add missing dependency.Ludovic Courtès
* gnu/packages/python-web.scm (python-jose)[propagated-inputs]: Add PYTHON-ECDSA.
2021-12-13Merge branch 'master' into core-updates-frozenLudovic Courtès
2021-12-13gnu: Add r-sanssouci.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-sanssouci): New variable.
2021-12-13gnu: Add r-isoformswitchanalyzer.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-isoformswitchanalyzer): New variable.
2021-12-13gnu: Add r-drimseq.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-drimseq): New variable.
2021-12-13gnu: Add r-dearseq.Marcel Schilling
* gnu/packages/bioconductor.scm (r-dearseq): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2021-12-12gnu: linux-libre 4.4: Update to 4.4.294.Leo Famulari
* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.294. (linux-libre-4.4-pristine-source): Update hash.
2021-12-12gnu: linux-libre 4.9: Update to 4.9.292.Leo Famulari
* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.292. (linux-libre-4.9-pristine-source): Update hash.
2021-12-12gnu: linux-libre 4.14: Update to 4.14.257.Leo Famulari
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.257. (linux-libre-4.14-pristine-source): Update hash.
2021-12-12gnu: linux-libre 4.19: Update to 4.19.220.Leo Famulari
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.220. (linux-libre-4.19-pristine-source): Update hash.
2021-12-12gnu: linux-libre 5.4: Update to 5.4.164.Leo Famulari
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.164. (linux-libre-5.4-pristine-source): Update hash.
2021-12-12gnu: linux-libre 5.10: Update to 5.10.84.Leo Famulari
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.84. (linux-libre-5.10-pristine-source): Update hash.
2021-12-12gnu: linux-libre: Update to 5.15.7.Leo Famulari
* gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.7. (linux-libre-5.15-pristine-source): Update hash.
2021-12-12gnu: gaupol: Don't attempt to compile bytecode twice.Marius Bakke
* gnu/packages/video.scm (gaupol)[arguments]: Disable needless compilation with a substitution. While here, remove trailing #t's.
2021-12-12gnu: mps-youtube: Disable sanity check.Marius Bakke
* gnu/packages/video.scm (mps-youtube)[arguments]: Add #:phases.
2021-12-12gnu: smplayer: Remove reference to %outputs.Marius Bakke
...which no longer exists in qt-build-system. * gnu/packages/video.scm (smplayer)[arguments]: Turn into gexp. Use #$OUTPUT instead of %OUTPUTS. Remove trailing #true's.
2021-12-12gnu: ruby-asciidoctor-pdf: Update to 1.6.1.Marius Bakke
* gnu/packages/ruby.scm (ruby-asciidoctor-pdf): Update to 1.6.1. [arguments]: Remove trailing #t's.
2021-12-12gnu: ruby-rouge: Update to 3.26.1.Marius Bakke
* gnu/packages/ruby.scm (ruby-rouge): Update to 3.26.1.
2021-12-12gnu: ruby-loofah: Update to 2.13.0.Marius Bakke
* gnu/packages/ruby.scm (ruby-loofah): Update to 2.13.0. [source]: Switch to GIT-FETCH. [arguments]: Remove. [native-inputs]: Add RUBY-HOE-MARKDOWN.
2021-12-12gnu: Add ruby-hoe-markdown.Marius Bakke
* gnu/packages/ruby.scm (ruby-hoe-markdown): New variable.
2021-12-12gnu: ruby-nokogiri: Update to 1.12.5.Marius Bakke
* gnu/packages/ruby.scm (ruby-nokogiri-1.10): New variable. (ruby-nokogiri): Inherit from it. Update to 1.12.5. (ruby-nokogiri-diff)[propagated-inputs]: Change from RUBY-NOKOGIRI to RUBY-NOKOGIRI-1.10.
2021-12-12gnu: guile-netlink: Allow cross-compilation.Ludovic Courtès
* gnu/packages/guile-xyz.scm (guile-netlink)[arguments]: Remove, since #:tests? #f is unnecessary. [native-inputs]: Add GUILE-3.0.
2021-12-12gnu: python-pyflakes@2.2: Adjust tests for Python 3.9.Ludovic Courtès
* gnu/packages/patches/python-pyflakes-test-location.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/python-xyz.scm (python-pyflakes-2.2): Use it.
2021-12-12gnu: sundials: Add 'release-monitoring-url' property.Ludovic Courtès
* gnu/packages/maths.scm (sundials)[properties]: New field.
2021-12-12gnu: sundials: Build with '-fcommon'.Ludovic Courtès
* gnu/packages/maths.scm (sundials)[arguments]: Pass "-DCMAKE_C_FLAGS".
2021-12-12gnu: guile-dsv: Update to 0.5.0Artyom V. Poptsov
* gnu/packages/guile-xyz.scm (guile-dsv): Update to 0.5.0.
2021-12-12gnu: Change source file-name suffix in rust packages.Z572
* gnu/packages/rust-apps.scm (rust-cbindgen)[source]: Change source file-name suffix from '.crate' to '.tar.gz'. * gnu/packages/crates-graphics.scm (rust-ansi-term-0.12): Likewise. (rust-ansi-term-0.11): Likewise. (rust-rgb-0.8): Likewise. * gnu/packages/crates-io.scm (rust-adler32-1): Likewise. (rust-antidote-1): Likewise. (rust-atty-0.2): Likewise. (rust-autocfg-0.1): Likewise. (rust-backtrace-sys-0.1): Likewise. (rust-base-x-0.2): Likewise. (rust-bencher-0.1): Likewise. (rust-bitflags-1): Likewise. (rust-blas-sys-0.7): Likewise. (rust-cargon-0.0): Likewise. (rust-cblas-sys-0.1): Likewise. (rust-cc-1): Likewise. (rust-cfg-if-0.1): Likewise. (rust-clang-sys-0.26): Likewise. (rust-clap-2): Likewise. (rust-clicolors-control-1): Likewise. (rust-cloudabi-0.1): Likewise. (rust-cloudabi-0.0): Likewise. (rust-cmake-0.1): Likewise. (rust-compiler-builtins-0.1): Likewise. (rust-constant-time-eq-0.1): Likewise. (rust-core-foundation-sys-0.6): Likewise. (rust-data-encoding-2): Likewise. (rust-defmac-0.2): Likewise. (rust-defmac-0.1): Likewise. (rust-dirs-1): Likewise. (rust-discard-1): Likewise. (rust-doc-comment-0.3): Likewise. (rust-dtoa-0.4): Likewise. (rust-dtoa-0.2): Likewise. (rust-fallible-iterator-0.2): Likewise. (rust-filetime-0.2): Likewise. (rust-findshlibs-0.5): Likewise. (rust-fixedbitset-0.2): Likewise. (rust-fixedbitset-0.1): Likewise. (rust-fnv-1): Likewise. (rust-foreign-types-shared-0.2): Likewise. (rust-fs-extra-1): Likewise. (rust-fuchsia-cprng-0.1): Likewise. (rust-fuchsia-zircon-0.3): Likewise. (rust-fuchsia-zircon-sys-0.3): Likewise. (rust-futures-0.1): Likewise. (rust-futures-core-preview-0.3): Likewise. (rust-futures-cpupool-0.1): Likewise. (rust-futures-io-preview-0.3): Likewise. (rust-futures-sink-preview-0.3): Likewise. (rust-getopts-0.2): Likewise. (rust-glob-0.3): Likewise. (rust-glob-0.2): Likewise. (rust-heapsize-0.4): Likewise. (rust-heapsize-0.3): Likewise. (rust-heapsize-plugin-0.1): Likewise. (rust-heck-0.3): Likewise. (rust-hex-0.3): Likewise. (rust-hex-0.2): Likewise. (rust-hostname-0.1): Likewise. (rust-iovec-0.1): Likewise. (rust-itoa-0.4): Likewise. (rust-itoa-0.1): Likewise. (rust-json-0.11): Likewise. (rust-kernel32-sys-0.2): Likewise. (rust-language-tags-0.2): Likewise. (rust-lazy-static-1): Likewise. (rust-libloading-0.5): Likewise. (rust-lock-api-0.1): Likewise. (rust-log-0.4): Likewise. (rust-maplit-1): Likewise. (rust-matches-0.1): Likewise. (rust-matrixmultiply-0.2): Likewise. (rust-matrixmultiply-0.1): Likewise. (rust-md5-0.7): Likewise. (rust-md5-0.6): Likewise. (rust-memmap-0.7): Likewise. (rust-memmap-0.6): Likewise. (rust-mime-0.3): Likewise. (rust-miniz-oxide-0.3): Likewise. (rust-miniz-sys-0.1): Likewise. (rust-miow-0.3): Likewise. (rust-miow-0.2): Likewise. (rust-modifier-0.1): Likewise. (rust-net2-0.2): Likewise. (rust-nodrop-0.1): Likewise. (rust-nodrop-union-0.1): Likewise. (rust-num-traits-0.1): Likewise. (rust-numtoa-0.1): Likewise. (rust-openssl-probe-0.1): Likewise. (rust-owning-ref-0.4): Likewise. (rust-parity-wasm-0.40): Likewise. (rust-peeking-take-while-0.1): Likewise. (rust-percent-encoding-2): Likewise. (rust-percent-encoding-1): Likewise. (rust-permutohedron-0.2): Likewise. (rust-pico-sys-0.0): Likewise. (rust-pkg-config-0.3): Likewise. (rust-plain-0.2): Likewise. (rust-plugin-0.2): Likewise. (rust-pocket-resources-0.3): Likewise. (rust-ppv-lite86-0.2): Likewise. (rust-proc-macro2-1): Likewise. (rust-quick-error-2): Likewise. (rust-quick-error-1): Likewise. (rust-quote-1): Likewise. (rust-rand-0.7): Likewise. (rust-rand-0.6): Likewise. (rust-rand-0.3): Likewise. (rust-rand-chacha-0.1): Likewise. (rust-rand-core-0.4): Likewise. (rust-rand-core-0.3): Likewise. (rust-rand-hc-0.2): Likewise. (rust-rand-hc-0.1): Likewise. (rust-rand-isaac-0.1): Likewise. (rust-rand-jitter-0.1): Likewise. (rust-rand-os-0.1): Likewise. (rust-rand-pcg-0.3): Likewise. (rust-rand-pcg-0.2): Likewise. (rust-rand-pcg-0.1): Likewise. (rust-rand-xorshift-0.1): Likewise. (rust-rawpointer-0.2): Likewise. (rust-rawpointer-0.1): Likewise. (rust-rdrand-0.4): Likewise. (rust-redox-syscall-0.1): Likewise. (rust-redox-termios-0.1): Likewise. (rust-resolv-conf-0.6): Likewise. (rust-rustc-demangle-0.1): Likewise. (rust-rustc-serialize-0.3): Likewise. (rust-rustc-std-workspace-core-1): Likewise. (rust-ryu-1): Likewise. (rust-safemem-0.3): Likewise. (rust-same-file-1): Likewise. (rust-schannel-0.1): Likewise. (rust-scoped-threadpool-0.1): Likewise. (rust-scoped-tls-1): Likewise. (rust-scoped-tls-0.1): Likewise. (rust-scopeguard-1): Likewise. (rust-scopeguard-0.3): Likewise. (rust-security-framework-sys-0.3): Likewise. (rust-semver-parser-0.9): Likewise. (rust-semver-parser-0.7): Likewise. (rust-serde-derive-1): Likewise. (rust-shlex-1): Likewise. (rust-shlex-0.1): Likewise. (rust-slab-0.4): Likewise. (rust-socket2-0.3): Likewise. (rust-sourcefile-0.1): Likewise. (rust-spin-0.5): Likewise. (rust-stacker-0.1): Likewise. (rust-static-assertions-1): Likewise. (rust-static-assertions-0.3): Likewise. (rust-stdweb-internal-runtime-0.1): Likewise. (rust-stdweb-internal-test-macro-0.1): Likewise. (rust-streaming-stats-0.2): Likewise. (rust-strsim-0.9): Likewise. (rust-strsim-0.8): Likewise. (rust-synstructure-test-traits-0.1): Likewise. (rust-tar-0.4): Likewise. (rust-tempdir-0.3): Likewise. (rust-tempfile-3): Likewise. (rust-term-0.4): Likewise. (rust-term-0.2): Likewise. (rust-termcolor-1): Likewise. (rust-termion-1): Likewise. (rust-termios-0.3): Likewise. (rust-thread-id-3): Likewise. (rust-thread-local-1): Likewise. (rust-thread-local-0.3): Likewise. (rust-threadpool-1): Likewise. (rust-time-0.1): Likewise. (rust-tokio-mock-task-0.1): Likewise. (rust-toml-0.5): Likewise. (rust-tracing-core-0.1): Likewise. (rust-traitobject-0.1): Likewise. (rust-try-from-0.3): Likewise. (rust-try-lock-0.2): Likewise. (rust-typeable-0.1): Likewise. (rust-typemap-0.3): Likewise. (rust-typenum-1): Likewise. (rust-ucd-trie-0.1): Likewise. (rust-ucd-util-0.1): Likewise. (rust-unicode-xid-0.2): Likewise. (rust-unicode-xid-0.1): Likewise. (rust-unreachable-1): Likewise. (rust-unsafe-any-0.4): Likewise. (rust-untrusted-0.7): Likewise. (rust-vcpkg-0.2): Likewise. (rust-vec-map-0.8): Likewise. (rust-version-check-0.9): Likewise. (rust-version-check-0.1): Likewise. (rust-void-1): Likewise. (rust-wasi-0.5): Likewise. (rust-wasm-bindgen-shared-0.2): Likewise. (rust-wasm-bindgen-test-macro-0.2): Likewise. (rust-widestring-0.4): Likewise. (rust-winapi-0.3): Likewise. (rust-winapi-0.2): Likewise. (rust-winapi-build-0.1): Likewise. (rust-winapi-util-0.1): Likewise. (rust-wincolor-1): Likewise. (rust-winutil-0.1): Likewise. (rust-ws2-32-sys-0.2): Likewise. (rust-xattr-0.2): Likewise. (rust-xdg-2): Likewise. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-12-12gnu: Use librsvg-bootstrap.Efraim Flashner
* gnu/packages/emacs.scm (emacs)[inputs]: Use librsvg-bootstrap. * gnu/pacakges/gtk.scm (gtk+-2, gtk+)[propagated-inputs]: Same.
2021-12-12gnu: Add librsvg-bootstrap.Efraim Flashner
* gnu/packages/gnome.scm (librsvg-bootstrap): New variable.
2021-12-12gnu: go-1.14: Fix building on some platforms.Efraim Flashner
* gnu/packages/golang.scm (go-1.14)[arguments]: In custom 'prebuild phase also search for loader without 'linux' in the string. In custom 'build phase set the GOCACHE directory. [native-inputs]: On systems which don't have support in go-1.4 use gccgo-10 instead.
2021-12-12gnu: python-patsy: Update to 0.5.2.Ricardo Wurmus
* gnu/packages/statistics.scm (python-patsy): Update to 0.5.2. [arguments]: Run tests conditionally; run tests with pytest. [native-inputs]: Replace python-nose with python-pytest.
2021-12-12gnu: remmina: Build with libsoup 2.Ricardo Wurmus
* gnu/packages/vnc.scm (remmina)[inputs]: Replace libsoup with libsoup-minimal-2.
2021-12-12gnu: salmon: Update to 1.6.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (salmon): Update to 1.6.0. [inputs]: Update pufferfish sources.
2021-12-12gnu: sbcl-geco: Update to 2.1.2.Foo Chuan Wei
* gnu/packages/lisp-xyz.scm (sbcl-geco): Update to 2.1.2. [home-page]: Update home page. [license]: Fix license. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-12-12gnu: sbcl-aserve: Add HTML5 elements to htmlgen.Foo Chuan Wei
* gnu/patches/sbcl-aserve-add-HTML-5-elements.patch: New file. * gnu/patches/sbcl-aserve-fix-rfe12668.patch: New file. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/lisp-xyz.scm (sbcl-aserve)[source]: Use them. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-12-12gnu: dunst : Update to 1.7.3.gyara
* gnu/packages/dunst.scm (dunst): Update to 1.7.3. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-12-12gnu: Use license prefix in (gnu packages sdl).Efraim Flashner
* gnu/packages/sdl.scm (sdl, sdl2, libmikmod, sdl-gfx, sdl-image, sdl-mixer, sdl-net, sdl-pango, sdl-ttf, guile-sdl, guile-sdl2, sdl2-cs) [license]: Use license prefix.
2021-12-12gnu: serveez: Update to 0.3.0.Efraim Flashner
* gnu/packages/serveez.scm (serveez): Update to 0.3.0. [source]: Download using lzip tarball. [native-inputs]: Add lzip. [inputs]: Replace guile-2.0 with guile-2.2.
2021-12-12gnu: guile-sdl: Update to 0.5.3.Efraim Flashner
* gnu/packages/sdl.scm (guile-sdl): Update to 0.5.3. [source]: Use lzip tarball. [native-inputs]: Add lzip.
2021-12-12gnu: guile-dsv: Update to 0.4.1Artyom V. Poptsov
* gnu/packages/guile-xyz.scm (guile-dsv): Update to 0.4.1. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2021-12-12gnu: python-moto: Honor #:tests? flag.Vinicius Monego
* gnu/packages/python-xyz.scm (python-moto)[arguments]: Adjust custom 'check phase to honor the #:tests? flag. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-12-12gnu: python-moto: Update to 2.2.12.Vinicius Monego
* gnu/packages/python-xyz.scm (python-moto): Update to 2.2.12. [arguments]: Make some cosmetic changes. <#:phases>: Don't return #t. Support cross-compilation in 'patch-hardcoded-executable-names. Skip more tests and simplify the custom 'check phase. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-12-12gnu: Update awscli, python-boto3 and python-botocore.Vinicius Monego
awscli, botocore and boto3 work together and typically require matching versions. * gnu/packages/python-xyz.scm (python-botocore): Update to 1.22.11. (python-boto3): Update to 1.19.11. [native-inputs]: Add python-pytest. * gnu/packages/python-web.scm (awscli): Update to 1.21.11. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-12-12gnu: python-s3transfer: Honor #:tests? flag.Vinicius Monego
* gnu/packages/python-web.scm (python-s3transfer)[arguments]: Adjust custom 'check phase to honor the #:tests? flag. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-12-12gnu: python-s3transfer: Update to 0.5.0.Vinicius Monego
* gnu/packages/python-web.scm (python-s3transfer): Update to 0.5.0. [arguments]<#:phases>: Remove 'patch phase because the issue was fixed upstream. Don't return #t in custom 'check phase. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-12-12gnu: python-cfn-lint: Honor #:tests? flag.Vinicius Monego
* gnu/packages/python-web.scm (python-cfn-lint)[arguments]: Make some cosmetic changes. Adjust custom 'check phase to honor the #:tests? flag. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-12-12gnu: python-cfn-lint: Update to 0.54.3.Vinicius Monego
* gnu/packages/python-web.scm (python-cfn-lint): Update to 0.54.3. [home-page]: Follow redirect. Signed-off-by: Ludovic Courtès <ludo@gnu.org>