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2022-10-04gnu: augustus: Update to 3.2.0....* gnu/packages/games.scm (augustus): Update to 3.2.0. [inputs]: Add expat. [snippet]: Unbundle it. Drop trailing #t. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> Timotej Lazar
2022-10-04gnu: emacs-lsp-mode: Update to 26c4d3e....* gnu/packages/emacs-xyz.scm (emacs-lsp-mode): Update to 26c4d3e. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> jgart
2022-10-04gnu: emacs-nov-el: Update to 0.4.0 and use gexps....* gnu/packages/emacs-xyz.scm (emacs-nov-el): Update to 0.4.0. [arguments]: Use gexps. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> Michael Rohleder
2022-10-04gnu: emacs-modus-themes: Update to 2.7.1....* gnu/packages/emacs-xyz.scm (emacs-modus-themes): Update to 2.7.1. Nicolas Goaziou
2022-10-04gnu: emacs-org-mime: Update to 0.3.2....* gnu/packages/emacs-xyz.scm (emacs-org-mime): Update to 0.3.2. Nicolas Goaziou
2022-10-04gnu: Add emacs-circadian....* gnu/packages/emacs-xyz.scm (emacs-circadian): New variable. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> kiasoc5
2022-10-03gnu: r-tximeta: Update to 1.14.1....* gnu/packages/bioconductor.scm (r-tximeta): Update to 1.14.1. Ricardo Wurmus
2022-10-03gnu: r-bionero: Update to 1.4.2....* gnu/packages/bioconductor.scm (r-bionero): Update to 1.4.2. [propagated-inputs]: Remove r-deseq2 and r-ggpubr; add r-ggrepel and r-patchwork. Ricardo Wurmus
2022-10-03gnu: r-biodb: Update to 1.4.2....* gnu/packages/bioconductor.scm (r-biodb): Update to 1.4.2. Ricardo Wurmus
2022-10-03gnu: r-biocdockermanager: Update to 1.8.1....* gnu/packages/bioconductor.scm (r-biocdockermanager): Update to 1.8.1. Ricardo Wurmus
2022-10-03gnu: r-basilisk: Update to 1.8.1....* gnu/packages/bioconductor.scm (r-basilisk): Update to 1.8.1. Ricardo Wurmus
2022-10-03gnu: r-bgeecall: Update to 1.12.2....* gnu/packages/bioconductor.scm (r-bgeecall): Update to 1.12.2. Ricardo Wurmus
2022-10-03gnu: r-pathview: Update to 1.36.1....* gnu/packages/bioconductor.scm (r-pathview): Update to 1.36.1. Ricardo Wurmus
2022-10-03gnu: r-delayedmatrixstats: Update to 1.18.1....* gnu/packages/bioconductor.scm (r-delayedmatrixstats): Update to 1.18.1. Ricardo Wurmus
2022-10-03gnu: r-scran: Update to 1.24.1....* gnu/packages/bioconductor.scm (r-scran): Update to 1.24.1. Ricardo Wurmus
2022-10-03gnu: r-scuttle: Update to 1.6.3....* gnu/packages/bioconductor.scm (r-scuttle): Update to 1.6.3. Ricardo Wurmus
2022-10-03gnu: r-hdf5array: Update to 1.24.2....* gnu/packages/bioconductor.scm (r-hdf5array): Update to 1.24.2. Ricardo Wurmus
2022-10-03gnu: r-biocpkgtools: Update to 1.14.1....* gnu/packages/bioconductor.scm (r-biocpkgtools): Update to 1.14.1. Ricardo Wurmus
2022-10-03gnu: r-biocviews: Update to 1.64.1....* gnu/packages/bioconductor.scm (r-biocviews): Update to 1.64.1. Ricardo Wurmus
2022-10-03gnu: r-bioccheck: Update to 1.32.1....* gnu/packages/bioconductor.scm (r-bioccheck): Update to 1.32.1. Ricardo Wurmus
2022-10-03gnu: r-cytoml: Update to 2.8.1....* gnu/packages/bioconductor.scm (r-cytoml): Update to 2.8.1. Ricardo Wurmus
2022-10-03gnu: r-opencyto: Update to 2.8.4....* gnu/packages/bioconductor.scm (r-opencyto): Update to 2.8.4. Ricardo Wurmus
2022-10-03gnu: r-flowstats: Update to 4.8.2....* gnu/packages/bioconductor.scm (r-flowstats): Update to 4.8.2. Ricardo Wurmus
2022-10-03gnu: r-flowviz: Update to 1.60.2....* gnu/packages/bioconductor.scm (r-flowviz): Update to 1.60.2. Ricardo Wurmus
2022-10-03gnu: r-ggcyto: Update to 1.24.1....* gnu/packages/bioconductor.scm (r-ggcyto): Update to 1.24.1. Ricardo Wurmus
2022-10-03gnu: r-ncdfflow: Update to 2.42.1....* gnu/packages/bioconductor.scm (r-ncdfflow): Update to 2.42.1. Ricardo Wurmus
2022-10-03gnu: r-rsubread: Update to 2.10.5....* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.10.5. Ricardo Wurmus
2022-10-03gnu: r-rgadem: Update to 2.44.1....* gnu/packages/bioconductor.scm (r-rgadem): Update to 2.44.1. Ricardo Wurmus
2022-10-03gnu: r-enrichplot: Update to 1.16.2....* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.16.2. Ricardo Wurmus
2022-10-03gnu: r-dose: Update to 3.22.1....* gnu/packages/bioconductor.scm (r-dose): Update to 3.22.1. Ricardo Wurmus
2022-10-03gnu: r-residualmatrix: Update to 1.6.1....* gnu/packages/bioconductor.scm (r-residualmatrix): Update to 1.6.1. Ricardo Wurmus
2022-10-03gnu: r-ggtree: Update to 3.4.4....* gnu/packages/bioconductor.scm (r-ggtree): Update to 3.4.4. Ricardo Wurmus
2022-10-03gnu: r-treeio: Update to 1.20.2....* gnu/packages/bioconductor.scm (r-treeio): Update to 1.20.2. Ricardo Wurmus
2022-10-03gnu: r-scaledmatrix: Update to 1.4.1....* gnu/packages/bioconductor.scm (r-scaledmatrix): Update to 1.4.1. Ricardo Wurmus
2022-10-03gnu: r-diffbind: Update to 3.6.4....* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.6.4. Ricardo Wurmus
2022-10-03gnu: r-zellkonverter: Update to 1.6.5....* gnu/packages/bioconductor.scm (r-zellkonverter): Update to 1.6.5. Ricardo Wurmus
2022-10-03gnu: r-limma: Update to 3.52.4....* gnu/packages/bioconductor.scm (r-limma): Update to 3.52.4. Ricardo Wurmus
2022-10-03gnu: r-genomicfeatures: Update to 1.48.4....* gnu/packages/bioconductor.scm (r-genomicfeatures): Update to 1.48.4. Ricardo Wurmus
2022-10-03gnu: r-genomeinfodb: Update to 1.32.4....* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.32.4. Ricardo Wurmus
2022-10-03gnu: r-gage: Update to 2.46.1....* gnu/packages/bioconductor.scm (r-gage): Update to 2.46.1. Ricardo Wurmus
2022-10-03gnu: r-complexheatmap: Update to 2.12.1....* gnu/packages/bioconductor.scm (r-complexheatmap): Update to 2.12.1. Ricardo Wurmus
2022-10-03gnu: r-chipseeker: Update to 1.32.1....* gnu/packages/bioconductor.scm (r-chipseeker): Update to 1.32.1. [propagated-inputs]: Add r-ggvenndiagram. Ricardo Wurmus
2022-10-03gnu: r-biostrings: Update to 2.64.1....* gnu/packages/bioconductor.scm (r-biostrings): Update to 2.64.1. Ricardo Wurmus
2022-10-03gnu: r-annotationforge: Update to 1.38.1....* gnu/packages/bioconductor.scm (r-annotationforge): Update to 1.38.1. Ricardo Wurmus
2022-10-03gnu: r-dearseq: Update to 1.8.4....* gnu/packages/bioconductor.scm (r-dearseq): Update to 1.8.4. Ricardo Wurmus
2022-10-03gnu: Remove ocaml-craml....The package doesn't build from source and is unmaintained according to its maintainer: https://github.com/realworldocaml/craml/pull/8#issuecomment-529235628. * gnu/packages/ocaml.scm (ocaml-craml): Delete variable. Maxim Cournoyer
2022-10-03gnu: r-spams: Update to 2.6.1....* gnu/packages/statistics.scm (r-spams): Update to 2.6.1. [source]: Migrate from gforge.inria.fr to gitlab.inria.fr, fetching from git. [phases]: Use gexps. {patch-paths, mkdist}: New phases. {no-mtune}: Delete trailing #t. [native-inputs]: New field. [home-page]: Update URL. Maxim Cournoyer
2022-10-03gnu: ocaml-dose3: Migrate from gforce.inria.fr....* gnu/packages/ocaml.scm (ocaml-dose3) [source]: Fetch from git from inill's gitlab instance. Maxim Cournoyer
2022-10-03gnu: Remove unused scotch patches....* gnu/packages/patches/scotch-build-parallelism.patch: Delete file. * gnu/packages/patches/scotch-integer-declarations.patch: Likewise. * gnu/local.mk (dist_patch_DATA): De-register them. Maxim Cournoyer
2022-10-03gnu: mpfi: Update to 1.5.4-1.b982534....* gnu/packages/multiprecision.scm (mpfi): Update to 1.5.4-1.b982534. [source]: Fetch from git and use latest commit available. [tests?]: Delete argument, enabling test suite. [phases]: New argument. [native-inputs]: New field. Maxim Cournoyer
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