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2024-02-22gnu: Add python-cwl-utils....* gnu/packages/bioinformatics.scm (python-cwl-utils): New variable. Change-Id: I9347c80c0e866b89a7d432091fbcf1bc009209a5 Signed-off-by: Arun Isaac <arunisaac@systemreboot.net> Arun Isaac
2024-02-22gnu: Add python-cwl-upgrader....* gnu/packages/bioinformatics.scm (python-cwl-upgrader): New variable. Change-Id: I2022239840e9fe9e745689ef8b8bf4279be2ff9e Signed-off-by: Arun Isaac <arunisaac@systemreboot.net> Arun Isaac
2024-02-22gnu: Add python-cwlformat....* gnu/packages/bioinformatics.scm (python-cwlformat): New variable. Change-Id: Ib2d79e350ab100c61c7afe2d5d3eafc72146e493 Signed-off-by: Arun Isaac <arunisaac@systemreboot.net> Arun Isaac
2024-02-22gnu: python-schema-salad: Update to 8.5.20240102191335....* gnu/packages/bioinformatics.scm (python-schema-salad): Update to 8.5.20240102191335. [native-inputs]: Add python-pytest-xdist. [propagated-inputs]: Add python-importlib-resources and python-mypy-extensions. Remove python-lockfile, python-rdflib-jsonld and python-typing-extensions. Replace python-mistune with python-mistune-next. [arguments]: Use G-expressions. Set exact version number. Skip more tests that require network access. Change-Id: I4de4704f58f40fdf9bf4c02e41c2c353beaa3eb2 Signed-off-by: Arun Isaac <arunisaac@systemreboot.net> Arun Isaac
2024-02-22gnu: python-ruamel-yaml: Update to 0.18.6....* gnu/package/serialization.scm (python-ruamel-yaml): Update to 0.18.6. (python-ruamel.yaml-0.16): New variable. * gnu/packages/package-management.scm (conda)[inputs]: Replace python-ruamel.yaml with python-ruamel.yaml-0.16. * gnu/packages/backup.scm (borgmatic)[inputs]: Replace python-ruamel.yaml with python-ruamel.yaml-0.16. * gnu/packages/python-xyz.scm (dynaconf)[inputs]: Replace python-ruamel.yaml with python-ruamel.yaml-0.16. Change-Id: Iff9eeeae043c9547d93a6c780f0c30bd760490d9 Change-Id: I43cad7e3936f62d209fbba7e86b93519cfc1c1ba Signed-off-by: Arun Isaac <arunisaac@systemreboot.net> Arun Isaac
2024-02-22gnu: python-ruamel.yaml.clib: Update to 0.2.8....* gnu/packages/serialization.scm (python-ruamel.yaml.clib): Update to 0.2.8. Change-Id: I18172bb4cad80b0e1a5db11fbc8fb937f46a1862 Signed-off-by: Arun Isaac <arunisaac@systemreboot.net> Arun Isaac
2024-02-22gnu: tigervnc-client: Update to 1.13.1....* gnu/packages/vnc.scm (tigervnc-client): Update to 1.13.1. (tigervnc-server): Likewise. Change-Id: I88157aabfe43bb7273d465fea4ef5bf31979d8e9 Maxim Cournoyer
2024-02-22gnu: emacs-tramp: Update to 2.6.2.1....* gnu/packages/emacs-xyz.scm (emacs-tramp): Update to 2.6.2.1. [inputs]: Delete field. Change-Id: I13a2f9c91dcfbd3152584fabd35597928ffe1de5 Maxim Cournoyer
2024-02-22gnu: Add neovim-dispatch....* gnu/packages/vim.scm (neovim-dispatch): New variable. Change-Id: I458b0d390168170b47119c7f592042177f1402ae Efraim Flashner
2024-02-22gnu: vim-dispatch: Update to 1.8-1.4c695bc....* gnu/packages/vim.scm (vim-dispatch): Update to 1.8-1.4c695bc. Change-Id: I70b53f048c365fda47ba8820392b1f94b6bcfedd Efraim Flashner
2024-02-22gnu: Add neovim-asyncrun....* gnu/packages/vim.scm (neovim-asyncrun): New variable. Change-Id: I8716ff4a1beeee3364973c12e0e6243a1b21afe6 Efraim Flashner
2024-02-22gnu: vim-asyncrun: Update to 2.12.4....* gnu/packages/vim.scm (vim-asyncrun): Update to 2.12.4. Change-Id: I316eb22c71ac4e807b9fd4590c7819478e4f7260 Efraim Flashner
2024-02-22gnu: universal-ctags: Update to 6.1.20240218.0....* gnu/packages/code.scm (universal-ctags): Update to 6.1.20240218.0. Change-Id: I3d4b19d0ba002d809cb5e659899965d3f62e8e1a Efraim Flashner
2024-02-22gnu: Remove duplicate module import....* gnu/packages/mail.scm: Remove extra import of (guix utils). Change-Id: I757af2e1249e687aedb9774986304c6366c625a9 Ricardo Wurmus
2024-02-22gnu: Add libdbx....* gnu/packages/mail.scm (libdbx): New variable. Change-Id: Ia50bec92c5de72e4037cbf59ee7ecc6bf657fdd0 Ricardo Wurmus
2024-02-21gnu: Add emacs-mini-echo....* gnu/packages/emacs-xyz.scm (emacs-mini-echo): New variable. Change-Id: Id5f293210755e7bb252b8e2a0ff71e9adb9cf95a Ricardo Wurmus
2024-02-21gnu: node-serialport-parser-inter-byte-timeout: Move in order....* gnu/packages/node-xyz.scm (node-serialport-parser-inter-byte-timeout): Move package in alphabetical order. Change-Id: Ice71f75c197b6d8f0e0c0c5b5bdb03ebf1d1d4cb Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com> Nicolas Graves
2024-02-21gnu: node-serialport-parser-ready: Move in alphabetical order....* gnu/packages/node-xyz.scm (node-serialport-parser-ready): Move package in alphabetical order. Change-Id: I4d16d0ea922cfdd5fde4f055200645dee4110036 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com> Nicolas Graves
2024-02-21gnu: node-serialport-parser-cctalk: Move in alphabetical order....* gnu/packages/node-xyz.scm (node-serialport-parser-cctalk): Move package in alphabetical order. Change-Id: Ia849d7f2a02f2d7ba8117e031056e01239a3a5fb Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com> Nicolas Graves
2024-02-21gnu: node-serialport-parser-byte-length: Move in alphabetical order....* gnu/packages/node-xyz.scm (node-serialport-parser-byte-length): Move package in alphabetical order. Change-Id: I0b6126f11695c9e08fb51327a7a87385928d4472 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com> Nicolas Graves
2024-02-21gnu: node-serialport-bindings: Move package in alphabetical order....* /gnu/packages/node-xyz.scm (node-serialport-bindings): Move package in alphabetical order. Change-Id: I8a232d2160191386c5cd4e41ce62c6e9bea030d7 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com> Nicolas Graves
2024-02-21gnu: node-serialport: Move package in alphabetical order....* /gnu/packages/node-xyz.scm (node-serialport): Move package in alphabetical order. Remove inheritance on node-serialport-binding-abstract, and add fields build-system, home-page, and license. (node-serialport-binding-abstract): Inherit from node-serialport and remove fields source, build-system, home-page, and license. (node-serialport-parser-delimiter, node-serialport-parser-readline, node-serialport-bindings, node-serialport-parser-regex, node-serialport-parser-ready, node-serialport-parser-inter-byte-timeout, node-serialport-parser-cctalk, node-serialport-parser-byte-length, node-serialport-stream): Inherit from node-serialport instead of node-serialport-binding-abstract. Change-Id: Ib2c6bae11f9a7afeaa8566c86d1800afd40d22d3 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com> Nicolas Graves
2024-02-21gnu: Add emacs-mu4e-column-faces....* gnu/packages/emacs-xyz.scm (emacs-mu4e-column-faces): New variable. Change-Id: I6a28ad3d8a86ccd2b9963aa61b7d6a3a15479996 Ricardo Wurmus
2024-02-21gnu: mold: Update to 2.4.0....* gnu/packages/mold.scm (mold): Update to 2.4.0. [source]: Streamline snippet. [inputs]: Remove unused openssl input. Change-Id: Iba4e7c1053459c5e765eb7089428149b49151e29 Maxim Cournoyer
2024-02-21gnu: Add r-options....* gnu/packages/cran.scm (r-options): New variable. Change-Id: I5e005bc8933796b0e5a6028dec2678fd74cc425d Ricardo Wurmus
2024-02-21gnu: jbr: Update to 17.0.10-b1211.2....* gnu/packages/java.scm (jbr): Update to 17.0.10-b1211.2. Change-Id: If08dc1f7d0c00f6ca2d2ebfb7daeca35cf3f665c Danny Milosavljevic
2024-02-21gnu: nyxt: Update to 3.11.3....* gnu/packages/web-browsers.scm (nyxt): Update to 3.11.3. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net> Andre A. Gomes
2024-02-21gnu: emacs-ess: Update to 24.01.1....* gnu/packages/statistics.scm (emacs-ess): Update to 24.01.1. [source]: Remove patch to fix r-help-mode test. [arguments]: Enable some tests; only run tests conditionally. Change-Id: Ib341eac2d2e57cda7b2534bf88b0dd762b56281a Ricardo Wurmus
2024-02-21gnu: mullvadbrowser: Update to 13.0.10....* gnu/packages/tor-browsers.scm (%mullvadbrowser-build-date): Update to 20240213150358. (%mullvadbrowser-version): Update to 13.0.10. (%mullvadbrowser-firefox-version): Update to 115.8.0esr-13.0-1-build1. Change-Id: Ia3c444e893bf7c3299d2d091c6c6578be272a782 Clément Lassieur
2024-02-20gnu: linux-libre-documentation: Fix compilation....When compiling linux-libre-documentation@6.6.16, the compilation fails with following error message: ------ Exception occurred: File "/tmp/guix-build-linux-libre-documentation-6.6.16.drv-0/linux-6.6.16/Documentation/sphinx/kernel_feat.py", line 112, in run nodeList = self.nestedParse(out_lines, fname) UnboundLocalError: local variable 'fname' referenced before assignment ------ This is already fixed upstream[0], so this commit backports the change. 0: https://lore.kernel.org/all/20240206054907.066a0325@coco.lan/t/ * gnu/packages/linux.scm (linux-libre-documentation): Apply patch fixing compilation. Change-Id: Ic96f14aa25df09f38e029ca70d2647cbf37c2365 Signed-off-by: Leo Famulari <leo@famulari.name> Tomas Volf
2024-02-21gnu: torbrowser: Update to 13.0.10....* gnu/packages/tor-browsers.scm (%torbrowser-build-date): Update to 20240213172118. (%torbrowser-version): Update to 13.0.10. (%torbrowser-firefox-version): Update to 115.8.0esr-13.0-1-build1. (translation-tor-browser): Update to a50fa943d7428ebe6e4e6b09f175e098a97eec63. Change-Id: Idbb708d8bdd5e75bed1423c0748007864f96da0f Clément Lassieur
2024-02-21gnu: ublock-origin: Update to 1.56.0....* gnu/packages/browser-extensions.scm (ublock-origin): Update to 1.56.0. (ublock-main-assets): Update to b15998fae22b2b9593794b6b46647385b9c101d4. (ublock-prod-assets): Update to 60fa7b4b33d5d257d9d0f1ee8db65c1e663f2d31. Change-Id: I46c7241328f36b19756263b84c95a57145c72a40 Clément Lassieur
2024-02-20gnu: ngtcp2: Update to 1.3.0....* gnu/packages/networking.scm (ngtcp2): Update to 1.3.0. [native-inputs]: Remove cunit. Change-Id: I5c1b411d4e7af0dc2bd33829b7c9ee1f2ac12a1e Signed-off-by: Jelle Licht <jlicht@fsfe.org> Tomas Volf
2024-02-20gnu: nghttp3: Update to 1.2.0....* gnu/packages/web.scm (nghttp3): Update to 1.2.0. [native-inputs]: Remove cunit. Change-Id: I802c0b7f11155afd8ce3b37a7fac2106fe61ccb4 Signed-off-by: Jelle Licht <jlicht@fsfe.org> Tomas Volf
2024-02-20gnu: alsa-scarlett-gui: Use ungexp....This is a follow-up to commit 5d81aa8613e7f9e348ccc9fd83c25d75a900ba37. * gnu/packages/music.scm (alsa-scarlett-gui)[arguments]: Use #$output and THIS-PACKAGE-INPUT instead of ASSOC-REF. Change-Id: If56af33e361a215c63c5e004b81d2d0e84a2dd56 Ricardo Wurmus
2024-02-20gnu: r-tam: Update to 4.2-21....* gnu/packages/cran.scm (r-tam): Update to 4.2-21. Change-Id: I4931defa8c43a5432fbfa93ed40234faa589fead Ricardo Wurmus
2024-02-20gnu: r-imager: Update to 0.45.8....* gnu/packages/cran.scm (r-imager): Update to 0.45.8. Change-Id: I5c3e2852d8136e77eec9810414623558cd01b7d8 Ricardo Wurmus
2024-02-20gnu: r-ggforce: Update to 0.4.2....* gnu/packages/cran.scm (r-ggforce): Update to 0.4.2. Change-Id: I619d7f55d43b8b4320f5162602e1a00fd5df8d5e Ricardo Wurmus
2024-02-20gnu: r-usethis: Update to 2.2.3....* gnu/packages/cran.scm (r-usethis): Update to 2.2.3. Change-Id: I69d069d6f068ac8a747d9d623b1c3e425046e730 Ricardo Wurmus
2024-02-20gnu: r-acdm: Update to 1.0.4.3....* gnu/packages/cran.scm (r-acdm): Update to 1.0.4.3. Change-Id: I6d22b039eea1f7947189fb141660901a75aa06b3 Ricardo Wurmus
2024-02-20gnu: r-circlize: Update to 0.4.16....* gnu/packages/cran.scm (r-circlize): Update to 0.4.16. Change-Id: Ic5f5f14c0b7abf8c20e06c127797c2cf02893bc8 Ricardo Wurmus
2024-02-20gnu: r-callr: Update to 3.7.5....* gnu/packages/cran.scm (r-callr): Update to 3.7.5. Change-Id: I0af56ae805e8a2fe7c0bd975bd25c65b136df249 Ricardo Wurmus
2024-02-20gnu: r-ggvenndiagram: Update to 1.5.2....* gnu/packages/cran.scm (r-ggvenndiagram): Update to 1.5.2. Change-Id: Id534fc82a43c3d88eaba708977626151d26385b4 Ricardo Wurmus
2024-02-20gnu: r-boot: Update to 1.3-29....* gnu/packages/statistics.scm (r-boot): Update to 1.3-29. Change-Id: Ia0e1c2da6c4cbae22466b4778309afaddf5a257b Ricardo Wurmus
2024-02-20gnu: r-estimability: Update to 1.5....* gnu/packages/statistics.scm (r-estimability): Update to 1.5. [native-inputs]: Add r-knitr. [description]: Use complete sentence. Change-Id: I9ed956ca7527a2316667813465bdb2bb47ebd516 Ricardo Wurmus
2024-02-20gnu: r-dt: Update to 0.32....* gnu/packages/statistics.scm (r-dt): Update to 0.32. Change-Id: I231ecc8a9606a8404f1bb5fccbcd5153d9cc7f7d Ricardo Wurmus
2024-02-20gnu: linux-libre 6.7: Modify .conf files....* gnu/packages/aux-files/linux-libre/6.7-arm.conf, gnu/packages/aux-files/linux-libre/6.7-arm64.conf: Add platform support. Change-Id: I90dee088ab11a31cb526b396d675e7bc22d67297 Signed-off-by: Leo Famulari <leo@famulari.name> Wilko Meyer
2024-02-20gnu: linux-libre 6.1: Update to 6.1.78....* gnu/packages/linux.scm (linux-libre-6.1-version): Update to 6.1.78. (linux-libre-6.1-pristine-source): Update hash. Change-Id: I1293b6494fa26f2c786d8cbabe6c855610eca499 Signed-off-by: Leo Famulari <leo@famulari.name> Wilko Meyer
2024-02-20gnu: linux-libre 6.6: Update to 6.6.17....* gnu/packages/linux.scm (linux-libre-6.6-version): Update to 6.6.17. (linux-libre-6.6-pristine-source): Update hashes. Change-Id: I911c604ff188f80068ec49edaa8df5aab00439a7 Signed-off-by: Leo Famulari <leo@famulari.name> Wilko Meyer
2024-02-20gnu: linux-libre 6.7: Update to 6.7.5....* gnu/packages/linux.scm (linux-libre-6.7-version): Update to 6.7.5. (linux-libre-6.7-pristine-source): Update hashes. Change-Id: I29490cd45a43a960b380a23cfb810494ea238691 Signed-off-by: Leo Famulari <leo@famulari.name> Wilko Meyer