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2017-05-21gnu: diamond: Update to 0.9.0....* gnu/packages/bioinformatics.scm (diamond): Update to 0.9.0. [license]: Change to AGPL3+. Ben Woodcroft
2017-05-21gnu: guix: Update to a6d728b.Ludovic Courtès
2017-05-21gnu: guix: Update to 0.13.0.Ludovic Courtès
2017-05-21gnu: fasttree: Update to 2.1.10....* gnu/packages/bioinformatics.scm (fasttree): Update to 2.1.10. Ben Woodcroft
2017-05-21gnu: python-biom-format: Update to 2.1.6....* gnu/packages/bioinformatics.scm (python-biom-format): Update to 2.1.6. [propagated-inputs]: Add python-pandas. Ben Woodcroft
2017-05-21gnu: python-future: Update to 0.16.0....* gnu/packages/python.scm (python-future): Update to 0.16.0. Ben Woodcroft
2017-05-21gnu: ccid: Update to 1.4.27....* gnu/packages/security-token.scm (ccid): Update to 1.4.27. Marius Bakke
2017-05-21gnu: fio: Update to 2.20....* gnu/packages/benchmark.scm (fio): Update to 2.20. [arguments]<#:phases>: Drop removed script from 'move-outputs' phase. Marius Bakke
2017-05-21gnu: nano: Update to 2.8.4....* gnu/packages/nano.scm (nano): Update to 2.8.4. Marius Bakke
2017-05-21gnu: vim: Update to 8.0.0600....* gnu/packages/vim.scm (vim, vim-full): Update to 8.0.0600. Marius Bakke
2017-05-21gnu: vim-full: Disable failing test....* gnu/packages/vim.scm (vim-full)[arguments]<#:phases>: Add substitution. Marius Bakke
2017-05-21gnu: linux-libre: Update to 4.11.2....* gnu/packages/linux.scm (%linux-libre-version): Update to 4.11.2. (%linux-libre-hash): Update hash. Mark H Weaver
2017-05-21gnu: linux-libre: Remove CONFIG_SMC from x86 kernel configurations....This removes support for the "shared memory communications over RDMA" (SMC-R) networking protocol, which was added in 4.11 without the knowledge of the RDMA maintainers, and which is thought to contain significant security flaws. For details, see <https://lwn.net/Articles/723081> and <https://lwn.net/Articles/723070>. * gnu/packages/aux-files/linux-libre/4.11-x86_64.conf, gnu/packages/aux-files/linux-libre/4.11-i686.conf: Disable CONFIG_SMC. 723# 0001-gnu-libevent-2.0-Add-fix-from-upstream.patch Mark H Weaver
2017-05-21gnu: linux-libre@4.9: Update to 4.9.29....* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.29. Mark H Weaver
2017-05-21gnu: linux-libre@4.4: Update to 4.4.69....* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.69. Mark H Weaver
2017-05-21gnu: unionfs-fuse-static: Remove 'unionfsctl' executable....This avoids pulling in glibc & co. Fixes a regression introduced in 2f861edf5cf5118ad560737343312c9a5efe5b2f (the 'unionfsctl' executable did not exist in unionfs-fuse 0.26). * gnu/packages/linux.scm (unionfs-fuse/static)[arguments] <post-install>: Remove 'unionfsctl' binary. Ludovic Courtès
2017-05-21gnu: unionfs-fuse-static: Remove 'unionfsctl' executable....This avoids pulling in glibc & co. Fixes a regression introduced in 2f861edf5cf5118ad560737343312c9a5efe5b2f (the 'unionfsctl' executable did not exist in unionfs-fuse 0.26). * gnu/packages/linux.scm (unionfs-fuse/static)[arguments] <post-install>: Remove 'unionfsctl' binary. Ludovic Courtès
2017-05-20gnu: ghostscript: Add TODO comment about bundled jbig2dec....* gnu/packages/ghostscript.scm (ghostscript): Add comment. Leo Famulari
2017-05-20gnu: jbig2dec: Fix CVE-2017-{7885,7975,7976}....* gnu/packages/patches/jbig2dec-CVE-2017-7885.patch, gnu/packages/patches/jbig2dec-CVE-2017-7975.patch, gnu/packages/patches/jbig2dec-CVE-2017-7976.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/image.scm (jbig2dec)[source]: Use them. Leo Famulari
2017-05-20gnu: pcsc-lite: Update to 1.8.21....* gnu/packages/security-token.scm (pcsc-lite): Update to 1.8.21. Marius Bakke
2017-05-20gnu: icedtea@3: Add aarch32-drop....* gnu/packages/java.scm (icedtea-8)[native-inputs]: Add aarch32-drop. Leo Famulari
2017-05-20gnu: icedtea@3: Update to 3.4.0 [security fixes]....Fixes CVE-2017-{3509,3511,3512,3514,3526,3533,3539,3544}. * gnu/packages/java.scm (icedtea-8): Update to 3.4.0. Leo Famulari
2017-05-20gnu: imagemagick: Update to 6.9.8-6....* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.8-6. Leo Famulari
2017-05-20gnu: guix: Add 'guile2.0-guix'....* gnu/packages/package-management.scm (guile2.0-guix): New variable. Ludovic Courtès
2017-05-20gnu: libssh, guile-ssh: Add a "debug" output....* gnu/packages/ssh.scm (libssh)[outputs]: New field. (guile-ssh)[outputs]: New field. Ludovic Courtès
2017-05-20gnu: icedtea@2: Update to 2.6.10 [security fixes]....Fixes CVE-2017-{3509,3511,3512,3514,3526,3533,3539,3544}. * gnu/packages/java.scm (icedtea-7): Update to 2.6.10. Leo Famulari
2017-05-20gnu: dropbear: Update to 2017.75 [fixes CVE-2017-{9078,9079}]....* gnu/packages/ssh.scm (dropbear): Update to 2017.75. Leo Famulari
2017-05-20gnu: guile-ssh: Fix potential double-free/use-after-free issue....Fixes <http://bugs.gnu.org/26976>. Reported by Mark H Weaver <mhw@netris.org>. * gnu/packages/patches/guile-ssh-double-free.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/ssh.scm (guile-ssh)[source](patches): Add it. Ludovic Courtès
2017-05-20gnu: aspell: 'dict-dir' set to ~/.guix-profile/lib/aspell or $ASPELL_DICT_DIR....See <https://bugs.gnu.org/25836> for background. * gnu/packages/patches/aspell-default-dict-dir.patch: New file. * gnu/packages/aspell.scm (aspell)[source](patches): New field. [native-search-paths]: New field. * gnu/local.mk (dist_patch_DATA): Add it. Ludovic Courtès
2017-05-20gnu: qemu: Fix CVE-2017-7493....* gnu/packages/patches/qemu-CVE-2017-7493.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/qemu.scm (qemu)[source]: Use it. Leo Famulari
2017-05-20gnu: glibc/hurd: Do not apply i686 patch....This is a follow-up to commit c2e4f14ac8cd3e1ce7f46a192ad0c9acc084b210. * gnu/packages/base.scm (glibc/hurd)[arguments]: Override pre-configure phase with a copy that does not include the patch application. Ricardo Wurmus
2017-05-20gnu: glibc/hurd: Use modify-phases syntax....* gnu/packages/base.scm (glibc/hurd)[arguments]: Use modify-phases syntax. Ricardo Wurmus
2017-05-20gnu: tor: Update to 0.3.0.7....* gnu/packages/tor.scm (tor): Update to 0.3.0.7. Efraim Flashner
2017-05-19gnu: icedtea@2: Update to 2.6.10 [security fixes]....Fixes CVE-2017-{3509,3511,3512,3514,3526,3533,3539,3544}. * gnu/packages/java.scm (icedtea-7): Update to 2.6.10. Leo Famulari
2017-05-20gnu: Add loksh....* gnu/packages/shells.scm (loksh): New variable. Signed-off-by: Marius Bakke <mbakke@fastmail.com> ng0
2017-05-19gnu: dropbear: Update to 2017.75 [fixes CVE-2017-{9078,9079}]....* gnu/packages/ssh.scm (dropbear): Update to 2017.75. Leo Famulari
2017-05-19gnu: calibre: Don't create uninstaller....* gnu/packages/ebook.scm (calibre)[arguments]<#:phases>. Add 'patch-source' phase. Co-authored-by: Marius Bakke <mbakke@fastmail.com> Brendan Tildesley
2017-05-19gnu: calibre: Add exhaustive license list....* gnu/packages/ebook.scm (calibre): Add exhaustive license list. (chmlib)[license]: Use license: prefix. Co-authored-by: Marius Bakke <mbakke@fastmail.com> Brendan Tildesley
2017-05-19gnu: calibre: Add missing dependencies....* gnu/packages/ebook.scm (calibre)[inputs]: Add poppler, python2-dnspython, and python2-pygments. [arguments]: Remove old TODO comments. libwmf and psutil are no longer used. Signed-off-by: Marius Bakke <mbakke@fastmail.com> Brendan Tildesley
2017-05-19gnu: calibre: Unbundle chardet....* gnu/packages/ebook.scm (calibre)[source]: Delete bundled chardet. [inputs]: Add python2-chardet. Signed-off-by: Marius Bakke <mbakke@fastmail.com> Brendan Tildesley
2017-05-19gnu: calibre: Unbundle liberation fonts....*gnu/packages/ebook.scm (calibre)[source]: Delete liberation .ttf files. [native-inputs]: Add font-liberation. [arguments]: Calibre still references the bundled fonts, so we install the packaged fonts to the directory the bundled fonts would have been. Signed-off-by: Marius Bakke <mbakke@fastmail.com> Brendan Tildesley
2017-05-19gnu: calibre: Unbundle python2-markdown....* gnu/packages/ebook.scm (calibre)[snippet]: Replace python references to bundled markdown with packaged. Remove markdown from source. [inputs]: Add python2-markdown as a dependency. Signed-off-by: Marius Bakke <mbakke@fastmail.com> Brendan Tildesley
2017-05-19gnu: calibre: Import unbundle feedparser patch from debian....* gnu/packages/ebook.scm (calibre)[source]: Reference new patch file. [inputs]: Add python2-feedparser as an input. * gnu/packages/patches/calibre-use-packaged-feedparser.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Marius Bakke <mbakke@fastmail.com> Brendan Tildesley
2017-05-19gnu: calibre: Import dont-load-icons patch from debian....* gnu/packages/patches/calibre-dont-load-remote-icons.patch: New file. * gnu/packages/ebooks.scm (calibre)[source]: Add reference to patch file. * gnu/local.mk (dist_path_DATA): Add it. Signed-off-by: Marius Bakke <mbakke@fastmail.com> Brendan Tildesley
2017-05-19gnu: calibre: Update to 2.85.1....* gnu/packages/ebooks.scm (calibre): Update to 2.85.1. * gnu/packages/patches/calibre-drop-unrar.patch: Delete incompatible patch file. Recreate debian patch file from the latest calibre git revision. Signed-off-by: Marius Bakke <mbakke@fastmail.com> Brendan Tildesley
2017-05-19gnu: python-pyqt@4: Update to 4.12....* gnu/packages/qt.scm (python-pyqt-4): Update to 4.12. [source]: Adjust URI to file rename. Marius Bakke
2017-05-19gnu: python-pyqt: Update to 5.8.2....* gnu/packages/qt.scm (python-pyqt): Update to 5.8.2. Marius Bakke
2017-05-19gnu: python-sip: Update to 4.19.2....* gnu/packages/qt.scm (python-sip): Update to 4.19.2. Marius Bakke
2017-05-19gnu: guile-ssh: Fix potential double-free/use-after-free issue....Fixes <http://bugs.gnu.org/26976>. Reported by Mark H Weaver <mhw@netris.org>. * gnu/packages/patches/guile-ssh-double-free.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/ssh.scm (guile-ssh)[source](patches): Add it. Ludovic Courtès
2017-05-18gnu: btrfs-progs: Update to 4.11....* gnu/packages/linux.scm (btrfs-progs): Update to 4.11. Tobias Geerinckx-Rice
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