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2018-11-23gnu: python-slepc4py: Update to 3.10.0.Paul Garlick
* gnu/packages/maths.scm (python-slepc4py): Update to 3.10.0. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-11-23gnu: python-petsc4py: Update to 3.10.0.Paul Garlick
* gnu/packages/maths.scm (python-petsc4py): Update to 3.10.0. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-11-23gnu: slepc: Update to 3.10.1.Paul Garlick
* gnu/packages/maths.scm (slepc): Update to 3.10.1. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-11-23gnu: petsc: Update to 3.10.2Paul Garlick
* gnu/packages/maths.scm (petsc): Update to 3.10.2. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-11-23gnu: python-ilinkedlist: Update to 0.4.0.Luther Thompson
* gnu/packages/python.scm (python-ilinkedlist): Update to 0.4.0. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-11-23gnu: pt-scotch, pt-scotch32: Add Open MPI setup phase.Ludovic Courtès
* gnu/packages/maths.scm (pt-scotch)[arguments]: Use 'invoke' instead of 'system*'. Add 'mpi-setup' phase. (pt-scotch32)[arguments]: Likewise.
2018-11-23gnu: pigx-scrnaseq: Use latest snakemake.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (pigx-scrnaseq)[inputs]: Replace snakemake-4 with snakemake.
2018-11-23gnu: pigx-bsseq: Use latest snakemake.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (pigx-bsseq)[inputs]: Replace snakemake-4 with snakemake.
2018-11-23gnu: pigx-chipseq: Use latest snakemake.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (pigx-chipseq)[inputs]: Replace snakemake-4 with snakemake.
2018-11-23gnu: python-gevent: Update to 1.3.7.Ricardo Wurmus
* gnu/packages/python.scm (python-gevent): Update to 1.3.7. [arguments]: Find headers for greenlet in phase "do-not-use-bundled-sources". [propagated-inputs]: Add python-objgraph.
2018-11-23gnu: Add python-objgraph.Ricardo Wurmus
* gnu/packages/python.scm (python-objgraph): New variable.
2018-11-23gnu: python-loompy: Remove python-typing.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-loompy)[propagated-inputs]: Remove python-typing.
2018-11-23gnu: emacs-picpocket: Update to 40.Alex Vong
Fix version string as well: <https://lists.gnu.org/archive/html/guix-devel/2018-11/msg00286.html>. * gnu/packages/emacs.scm (emacs-picpocket): Update to 40.
2018-11-23gnu: xpra: Update to 2.4.2.Rutger Helling
* gnu/packages/xorg.scm (xpra): Update to 2.4.2.
2018-11-22gnu: Add u-boot-pinebook.Vagrant Cascadian
* gnu/packages/patches/u-boot-pinebook-a64-update-dts.patch: New file. * gnu/packages/patches/u-boot-pinebook-syscon-node.patch: New file. * gnu/packages/patches/u-boot-pinebook-mmc-calibration.patch: New file. * gnu/packages/patches/u-boot-pinebook-video-bridge.patch: New file. * gnu/packages/patches/u-boot-pinebook-r_i2c-controller.patch: New file. * gnu/packages/patches/u-boot-pinebook-dts.patch: New file. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/bootloaders.scm (u-boot-pinebook): New exported variable. * gnu/bootloader/u-boot.scm (u-boot-pinebook-bootloader): New exported variable. * gnu/system/install.scm (pinebook-installation-os): New exported variable.
2018-11-22gnu: podofo: Add patch to fix build.Ricardo Wurmus
* gnu/packages/patches/podofo-cmake-3.12.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/pdf.scm (podofo)[source]: Add patch.
2018-11-22gnu: jalv: Build with python-2.Efraim Flashner
* gnu/packages/audio.scm (jalv)[arguments]: Build with python-2.
2018-11-22gnu: ccl: Fix missing command line argument support in wrapper.Pierre Neidhardt
* gnu/packages/lisp.scm (ccl): Fix missing command line argument support in wrapper.
2018-11-22gnu: gajim: Rename wrap-program phases.Arun Isaac
* gnu/packages/messaging.scm (gajim)[arguments]: Rename wrap-program phases to wrap-gi-typelib-path and wrap-gsettings-schema-dir.
2018-11-22gnu: python-scikit-learn: Update to 0.20.1.Marius Bakke
* gnu/packages/patches/python-scikit-learn-fix-test-non-determinism.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. * gnu/packages/machine-learning.scm (python-scikit-learn): Update to 0.20.1. [source](patches): Remove. [arguments]: Skip network tests with pytest instead of deleting files. Make sure $HOME is writable. (python2-scikit-learn): Rewrite in terms of PACKAGE-WITH-PYTHON2.
2018-11-22gnu: supercollider: Update to 3.9.3.Nicolas Goaziou
* gnu/packages/audio.scm (supercollider): Update to 3.9.3.
2018-11-22gnu: giac-xcas: Add a "doc" outputNicolas Goaziou
* gnu/packages/algebra.scm (giac-xcas): Add "doc" output. [arguments]: Add phase to install documentation in the appropriate directory.
2018-11-22gnu: giac-xcas: Update to 1.5.0-19.Nicolas Goaziou
* gnu/packages/algebra.scm (giac-xcas): Update to 1.5.0-19.
2018-11-22gnu: ccl: Properly include x86-headers and remove missing "contrib" folder.Pierre Neidhardt
* gnu/packages/lisp.scm (ccl): Include x86-headers and remove missing "contrib" folder. [home-page]: Use HTTPS.
2018-11-22Merge branch 'master' into core-updatesMarius Bakke
2018-11-22gnu: python-tblib: Fix test failure with Python 3.7.Marius Bakke
* gnu/packages/python.scm (python-tblib)[arguments]: Add 'adjust-tests' phase.
2018-11-21gnu: python-numpy: Update to 1.15.4.Marius Bakke
* gnu/packages/python.scm (python-numpy): Update to 1.15.4.
2018-11-21gnu: mbedtls-apache: Update to 2.14.0.Marius Bakke
* gnu/packages/tls.scm (mbedtls-apache): Update to 2.14.0.
2018-11-21gnu: termite: Update to 14.Marius Bakke
* gnu/packages/terminals.scm (termite): Update to 14.
2018-11-21gnu: vte-ng: Update to 0.54.2.a.Marius Bakke
* gnu/packages/gnome.scm (vte-ng): Update to 0.54.2.a.
2018-11-21gnu: vte-ng: Fetch source using git.Marius Bakke
* gnu/packages/gnome.scm (vte-ng)[source]: Rewrite in terms of GIT-FETCH.
2018-11-21gnu: vte-ng: Add a home page.Marius Bakke
* gnu/packages/gnome.scm (vte-ng)[home-page]: New field.
2018-11-21gnu: python-numpy: Update to 1.14.6.Marius Bakke
* gnu/packages/python.scm (python-numpy): Update to 1.14.6.
2018-11-21gnu: webkitgtk: Update to 2.22.4.Marius Bakke
* gnu/packages/webkit.scm (webkitgtk-2.22): Update to 2.22.4.
2018-11-21gnu: git: Update to 2.19.2.Marius Bakke
* gnu/packages/version-control.scm (git): Update to 2.19.2.
2018-11-21gnu: feh: Update to 3.1.Marius Bakke
* gnu/packages/image-viewers.scm (feh): Update to 3.1.
2018-11-22gnu: teeworlds: Update to 0.7.0 [fixes CVE-2018-18541].Alex Vong
* gnu/packages/games.scm (teeworlds): Update to 0.7.0. [source]: Switch to git-fetch. Remove all bundled libraries except md5. [arguments]: Adjust accordingly. [inputs]: Use sdl2 instead of sdl and python-wrapper instead of python-2. Add json-parser and pnglite. * gnu/packages/patches/teeworlds-use-latest-wavpack.patch: Update it.
2018-11-22gnu: bam: Update to 0.5.1.Alex Vong
* gnu/packages/build-tools.scm (bam): Update to 0.5.1. [source]: Switch to git-fetch. [arguments]: Use newly provided Makefile. [inputs]: Add lua.
2018-11-22gnu: Add json-parser.Alex Vong
* gnu/packages/web.scm (json-parser): New variable.
2018-11-22gnu: Add pnglite.Alex Vong
* gnu/packages/image.scm (pnglite): New variable.
2018-11-21Merge remote-tracking branch 'origin/master' into core-updatesEfraim Flashner
2018-11-21gnu: libbytesize: Make .mo file builds reproducible.Ludovic Courtès
* gnu/packages/c.scm (libbytesize)[sources](modules, snippet): New fields. [arguments]: Add #:configure-flags and #:phases.
2018-11-21gnu: emacs-pdf-tools: Fix build with recent Poppler.Ludovic Courtès
* gnu/packages/patches/emacs-pdf-tools-poppler.patch: New file. * gnu/packages/emacs.scm (emacs-pdf-tools)[source]: Use it. * gnu/local.mk (dist_patch_DATA): Add it.
2018-11-21gnu: emacs-pdf-tools: Use 'git-fetch'.Ludovic Courtès
* gnu/packages/emacs.scm (emacs-pdf-tools)[source]: Switch to GIT-FETCH. [arguments]: In 'emacs-patch-variables' phase, make files writable.
2018-11-21gnu: casync: Fix build with glibc 2.28.Ludovic Courtès
* gnu/packages/patches/casync-renameat2-declaration.patch: New file. * gnu/packages/sync.scm (casync)[source]: Use it. * gnu/local.mk (dist_patch_DATA): Add it.
2018-11-21gnu: ntk: Don't use bundled waf.Efraim Flashner
* gnu/packages/fltk.scm (ntk)[inputs]: Add python-waf. [arguments]: Add custom phase to replace vendored waf.
2018-11-21gnu: python-waf: Use a proper directory structure.Efraim Flashner
Fixes <https://bugs.gnu.org/25634>. * gnu/packages/python.scm (python-waf): Replace custom 'install phase to install "waf" binary into the bin directory. Remove the 'wrap phase. * gnu/packages/video.scm (mpv)[arguments]: Adjust the 'setup-waf phase accordingly.
2018-11-21gnu: python-waf: Use a proper directory structure.Efraim Flashner
Fixes <https://bugs.gnu.org/25634>. * gnu/packages/python.scm (python-waf): Replace custom 'install phase to install "waf" binary into the bin directory. Remove the 'wrap phase. * gnu/packages/video.scm (mpv)[arguments]: Adjust the 'setup-waf phase accordingly.
2018-11-21gnu: font-ubuntu: Update url.Jan Nieuwenhuizen
* gnu/packages/fonts.scm (font-ubuntu): Use new url, update hash.
2018-11-21gnu: Add python-wikidata.swedebugia
* gnu/packages/python.scm (python-wikidata): New variable. Co-authored-by: Ludovic Courtès <ludo@gnu.org>
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