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2020-03-09gnu: Add sycamore....* gnu/packages/lisp-xyz.scm (cl-sycamore, sbcl-sycamore): New variables. Pierre Neidhardt
2020-03-09gnu: emacs-sly: Update to 20200228....* gnu/packages/emacs-xyz.scm (emacs-sly): Update to 20200228. Pierre Neidhardt
2020-03-09gnu: r-desolve: Update to 1.28....* gnu/packages/cran.scm (r-desolve): Update to 1.28. Ricardo Wurmus
2020-03-09gnu: r-umap: Update to 0.2.5.0....* gnu/packages/cran.scm (r-umap): Update to 0.2.5.0. [native-inputs]: Add r-knitr. Ricardo Wurmus
2020-03-09gnu: r-rcppannoy: Update to 0.0.16....* gnu/packages/cran.scm (r-rcppannoy): Update to 0.0.16. [native-inputs]: Remove r-knitr. Ricardo Wurmus
2020-03-09gnu: r-quantmod: Update to 0.4-16....* gnu/packages/cran.scm (r-quantmod): Update to 0.4-16. Ricardo Wurmus
2020-03-09gnu: r-vcd: Update to 1.4-6....* gnu/packages/cran.scm (r-vcd): Update to 1.4-6. Ricardo Wurmus
2020-03-09gnu: r-ggrepel: Update to 0.8.2....* gnu/packages/cran.scm (r-ggrepel): Update to 0.8.2. Ricardo Wurmus
2020-03-08gnu: guix-data-service: Update to 0.0.1-18.18eb9df....* gnu/packages/web.scm (guix-data-service): Update to 0.0.1-18.18eb9df. (inputs, native-inputs): Switch to using the Guile 3 package variants where applicable. Christopher Baines
2020-03-09gnu: python-virtualenv: Update to 20.0.8....* gnu/packages/python-xyz.scm (python-virtualenv): Update to 20.0.8. [arguments]: Remove the now-redundant 'disable-failing-test phase. [native-inputs]: Add python-setuptools and python-setuptools-scm. [inputs]: Add python-{appdirs, distlib, filelock, six, importlib-metadata}. Jakub Kądziołka
2020-03-09gnu: python-xyz: Add python-filelock....* gnu/packages/python-xyz.scm (python-filelock): New variable. Jakub Kądziołka
2020-03-09gnu: python-xyz: Add python-distlib....* gnu/packages/python-xyz.scm (python-distlib): New variable. Jakub Kądziołka
2020-03-08gnu: ngless: Update to 1.1.0....* gnu/packages/bioinformatics.scm (ngless): Update to 1.1.0. Ricardo Wurmus
2020-03-08gnu: Add jack-select....* gnu/packages/music.scm (jack-select): New variable. Ricardo Wurmus
2020-03-08gnu: taxtastic: Update to 0.8.11....* gnu/packages/bioinformatics.scm (taxtastic): Update to 0.8.11. [source]: Fetch from Github. [arguments]: Build with default Python; add phases 'prepare-directory, 'python37-compatibility, and update 'check phase. [propagated-inputs]: Replace Python 2 variants with Python 3 variants. Ricardo Wurmus
2020-03-08gnu: guile-next: Revert to 3.0.0....Guile 3.0.1 segfaults while building guix-system-tests.drv on and "guile3.0-guix" on x86_64-linux. * gnu/packages/guile.scm (guile-next): Revert to 3.0.0. (guile-3.0): Ludovic Courtès
2020-03-08gnu: Add perl-config-inifiles....* gnu/packages/perl.scm (perl-config-inifiles): New variable. Roel Janssen
2020-03-08gnu: Add perl-attribute-util....* gnu/packages/perl.scm (perl-attribute-util): New variable. Roel Janssen
2020-03-08gnu: Add font-opendyslexic....* gnu/packages/fonts.scm (font-opendyslexic): New variable. (font-open-dyslexic): Mark as deprecated package. Efraim Flashner
2020-03-08gnu: beep: Remove dependency on GCC 8....* gnu/packages/terminals.scm (beep)[native-inputs]: Remove. Ludovic Courtès
2020-03-08gnu: beep: Update to 1.4.9....* gnu/packages/terminals.scm (beep): Update to 1.4.9. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Vincent Legoll
2020-03-08gnu: guile-next: Update to 3.0.1....* gnu/packages/guile.scm (guile-3.0): Update to 3.0.1. Use "mirror://" URL. Ludovic Courtès
2020-03-08gnu: r-robust: Update to 0.5-0.0....* gnu/packages/statistics.scm (r-robust): Update to 0.5-0.0. Ricardo Wurmus
2020-03-08gnu: r-rapidjsonr: Update to 1.2.0....* gnu/packages/cran.scm (r-rapidjsonr): Update to 1.2.0. Ricardo Wurmus
2020-03-08gnu: r-atacseqqc: Update to 1.10.3....* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.10.3. [native-inputs]: Add r-knitr. Ricardo Wurmus
2020-03-08gnu: Reword and extend descriptions for some KDE packages....* gnu/packages/kde-multimedia.scm (libkcompatdisc)[description]: Extend. * gnu/packages/kde-pim.scm (akonadi-search, kalarmcal, kdemailimporter, kdepim-apps-libs, kidentitymanagement, kldap, kmailtransport, kmbox, kmime, kontactinterface, kpimtextedit)[description]: Reword and extend. (ktnef, kpimcommon, libkdepim)[synopsis, description]: Reword and extend. (kmailtransport)[synopsis]: Fix space. * gnu/packages/kde-systemtools.scm (khelpcenter)[description]: Extend. Hartmut Goebel
2020-03-08gnu: Add emacs-org-journal....* gnu/packages/emacs-xyz.scm (emacs-org-journal): New Variable. Martin Becze
2020-03-08gnu: python-umap-learn: Fix build....* gnu/packages/machine-learning.scm (python-umap-learn): Add python-joblib to run the test suite. Roel Janssen
2020-03-07gnu: QEMU: Fix CVE-2020-8608....* gnu/packages/patches/qemu-CVE-2020-8608.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/virtualization.scm (qemu)[source]: Use it. Leo Famulari
2020-03-07gnu: brotli: Remove package...Same package is provided by google-brotli. * gnu/packages/compression.scm (brotli): Redefine as a deprecated alias for "google-brotli". Co-authored-by: Ludovic Courtès <ludo@gnu.org> Lars-Dominik Braun
2020-03-07gnu: woff2: Update to 1.0.2...* gnu/packages/fontutils.scm (woff2): Update to 1.0.2 and switch to cmake * gnu/packages/patches/woff2-libbrotli.patch: Remove * gnu/local.mk (dist_patch_DATA): Remove patch Signed-off-by: Ludovic Courtès <ludo@gnu.org> Lars-Dominik Braun
2020-03-07gnu: ccache: Fix indentation...* gnu/packages/ccache.scm (ccache): Fix indentation Signed-off-by: Ludovic Courtès <ludo@gnu.org> Vincent Legoll
2020-03-07gnu: ccache: Update to 3.7.7....gnu/packages/ccache.scm (ccache): Update to 3.7.7, update homepage to ccache.dev, get source code from github, remove fortran 77 from description. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Vincent Legoll
2020-03-07gnu: eudev: Add variant with corrected Btrfs rules....Discussed at <https://bugs.gnu.org/39926>. * gnu/packages/linux.scm (eudev/btrfs-fix): New variable. * gnu/services/base.scm (<udev-configuration>)[udev]: Default to it. (udev-service): Likewise for #:udev. Ludovic Courtès
2020-03-07gnu: guile: Add 2.2.7....* gnu/packages/guile.scm (guile-2.2.7): New variable. (guile-2.2/bug-fix): Redefine as a deprecated alias for GUILE-2.2.7. * gnu/packages/admin.scm (shepherd)[native-inputs, inputs]: Use GUILE-2.2.7. * gnu/packages/patches/guile-finalization-crash.patch: Remove. * gnu/local.mk (dist_patch_DATA): Remove it. Ludovic Courtès
2020-03-07gnu: emacs-xr: Update to 1.17....* gnu/packages/emacs-xyz.scm (emacs-xr): Update to 1.17. Nicolas Goaziou
2020-03-07gnu: emacs-relint: Update to 1.15....* gnu/packages/emacs-xyz.scm (emacs-relint): Update to 1.15. Nicolas Goaziou
2020-03-07gnu: r-dplyr: Update to 0.8.5....* gnu/packages/statistics.scm (r-dplyr): Update to 0.8.5. [native-inputs]: Add r-knitr. Ricardo Wurmus
2020-03-07gnu: r-survival: Update to 3.1-11....* gnu/packages/statistics.scm (r-survival): Update to 3.1-11. Ricardo Wurmus
2020-03-07gnu: r-lifecycle: Update to 0.2.0....* gnu/packages/cran.scm (r-lifecycle): Update to 0.2.0. [native-inputs]: Add r-knitr. Ricardo Wurmus
2020-03-07gnu: r-covr: Update to 3.5.0....* gnu/packages/cran.scm (r-covr): Update to 3.5.0. [native-inputs]: Add r-knitr. Ricardo Wurmus
2020-03-07gnu: r-pscl: Update to 1.5.5....* gnu/packages/cran.scm (r-pscl): Update to 1.5.5. Ricardo Wurmus
2020-03-07gnu: r-mosaic: Add r-knitr....* gnu/packages/cran.scm (r-mosaic)[native-inputs]: Add r-knitr. Ricardo Wurmus
2020-03-07gnu: r-insight: Update to 0.8.2....* gnu/packages/cran.scm (r-insight): Update to 0.8.2. [native-inputs]: Add r-knitr. Ricardo Wurmus
2020-03-07gnu: r-heatmaply: Add r-knitr....* gnu/packages/cran.scm (r-heatmaply)[native-inputs]: Add r-knitr. Ricardo Wurmus
2020-03-07gnu: r-methylkit: Add r-knitr....* gnu/packages/bioinformatics.scm (r-methylkit)[native-inputs]: Add r-knitr. Ricardo Wurmus
2020-03-07gnu: r-ggrepel: Add r-knitr....* gnu/packages/cran.scm (r-ggrepel)[native-inputs]: Add r-knitr. Ricardo Wurmus
2020-03-07gnu: r-multiassayexperiment: Update to 1.12.4....* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.12.4. Ricardo Wurmus
2020-03-07gnu: r-depecher: Update to 1.2.2....* gnu/packages/bioconductor.scm (r-depecher): Update to 1.2.2. [native-inputs]: Add r-knitr. Ricardo Wurmus
2020-03-07gnu: r-xcms: Update to 3.8.2....* gnu/packages/bioconductor.scm (r-xcms): Update to 3.8.2. Ricardo Wurmus
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