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2022-12-13gnu: python-graphviz: Update to 0.20.1....* gnu/packages/graphviz.scm (python-graphviz): Update to 0.20.1. [build-system]: Use pyproject-build-system. [arguments]: Remove custom "check" phase; add "prepare-check" phase. [native-inputs]: Remove python-mock. Ricardo Wurmus
2022-12-12gnu: python-anndata: Use pyproject-build-system....* gnu/packages/python-xyz.scm (python-anndata)[build-system]: Use pyproject-build-system. [arguments]: Replace custom 'build phase with 'set-version phase; remove custom 'install phase; disable doctest via build phase 'disable-doctests and the #:test-flags property. [propagated-inputs]: Add python-scikit-learn. [native-inputs]: Add python-boltons. Ricardo Wurmus
2022-12-12gnu: python-zarr: Update to 2.13.3....* gnu/packages/python-xyz.scm (python-zarr): Update to 2.13.3. Ricardo Wurmus
2022-12-12gnu: python-numcodecs: Update to 0.10.2....* gnu/packages/python-xyz.scm (python-numcodecs): Update to 0.10.2. [build-system]: Use pyproject-build-system. [arguments]: Enable tests; add phase 'build-extensions; remove custom 'check phase. [propagated-inputs]: Add python-entrypoints and python-typing-extensions-next. Ricardo Wurmus
2022-12-12gnu: python-typer: Simplify by using pyproject-build-system....* gnu/packages/python-xyz.scm (python-typer)[build-system]: Use pyproject-build-system. [arguments]: Remove extra quoting; remove custom 'build phase; remove custom 'install phase; remove custom 'check phase; add 'pre-check phase. [synopsis]: Pull onto the same line. [description]: Reformat. Ricardo Wurmus
2022-12-12gnu: Add erlang-yamerl....* gnu/packages/erlang.scm (erlang-yamerl): New variable. Signed-off-by: Christopher Baines <mail@cbaines.net> jgart
2022-12-12gnu: Add erlang-jsx....* gnu/packages/erlang.scm (erlang-jsx): New variable. Signed-off-by: Christopher Baines <mail@cbaines.net> jgart
2022-12-12services: guix-build-coordinator: Fix service startup....Previously the service would keep starting more and more processes. * gnu/services/guix.scm (guix-build-coordinator-shepherd-services): Fix how make-forkexec-constructor is called. Christopher Baines
2022-12-12gnu: re2: Update to 2022-12-01....* gnu/packages/regex.scm (re2): Update to 2022-12-01. Marius Bakke
2022-12-12tests: Add system tests for each supported kernel version....* gnu/tests/base.scm (%test-basic-os): Rename to ... (test-basic-os): ... this, and turn into procedure that takes optional KERNEL argument. (%test-basic-os): Use that procedure. (%test-linux-libre-5.15, %test-linux-libre-5.10, %test-linux-libre-5.4, %test-linux-libre-4.19, %test-linux-libre-4.14, %test-linux-libre-4.9): New tests. Marius Bakke
2022-12-12gnu: f2fs-tools: Remove obsolete phase....* gnu/packages/linux.scm (f2fs-tools)[arguments]: Remove. (f2fs-tools-1.7)[arguments]: Add #:phases. Marius Bakke
2022-12-12gnu: f2fs-tools: Update to 1.15.0....* gnu/packages/linux.scm (f2fs-tools): Update to 1.15.0. (f2fs-tools/static)[arguments]: Add #:make-flags. Remove make-static phase. Marius Bakke
2022-12-12gnu: f2fs-tools@1.7: Don't fetch autogenerated git snapshot....* gnu/packages/linux.scm (f2fs-tools-1.7)[source]: Switch to GIT-FETCH. Marius Bakke
2022-12-12gnu: f2fs-tools: Don't fetch autogenerated git snapshot....* gnu/packages/linux.scm (f2fs-tools)[source]: Switch to GIT-FETCH. Marius Bakke
2022-12-12gnu: f2fs-tools: Reverse inheritance relationship....* gnu/packages/linux.scm (f2fs-tools): Update to 1.14.0. [arguments]: Remove obsolete #:configure-flags and trailing #t in phase. [inputs]: Remove labels. (f2fs-tools-1.7): Inherit from above; add #:configure-flags. [inputs]: Remove labels. Marius Bakke
2022-12-12gnu: ungoogled-chromium: Build with ffmpeg@4....This is a follow-up to commit 79564bf9977ebba0b31d8dc291eb039142f51f68. * gnu/packages/chromium.scm (ungoogled-chromium)[inputs]: Change from FFMPEG to FFFMPEG-4. Marius Bakke
2022-12-12gnu: Add r-golem....* gnu/packages/cran.scm (r-golem): New variable. Mădălin Ionel Patrașcu
2022-12-12gnu: Add r-attempt....* gnu/packages/cran.scm (r-attempt): New variable. Mădălin Ionel Patrașcu
2022-12-12gnu: Add r-anytime....* gnu/packages/cran.scm (r-anytime): New variable. Mădălin Ionel Patrașcu
2022-12-12gnu: Add r-shinycustomloader....* gnu/packages/cran.scm (r-shinycustomloader): New variable. Mădălin Ionel Patrașcu
2022-12-12gnu: Add r-logging....* gnu/packages/cran.scm (r-logging): New variable. Mădălin Ionel Patrașcu
2022-12-12gnu: Add r-asics....* gnu/packages/bioconductor.scm (r-asics): New variable. Mădălin Ionel Patrașcu
2022-12-12gnu: Add r-pepsnmr....* gnu/packages/bioconductor.scm (r-pepsnmr): New variable. Mădălin Ionel Patrașcu
2022-12-12gnu: Add r-ptw....* gnu/packages/cran.scm (r-ptw): New variable. Mădălin Ionel Patrașcu
2022-12-12gnu: Add r-rcppde....* gnu/packages/cran.scm (r-rcppde): New variable. Mădălin Ionel Patrașcu
2022-12-12gnu: Add r-animalcules....* gnu/packages/bioconductor.scm (r-animalcules): New variable. Mădălin Ionel Patrașcu
2022-12-12gnu: Add r-plotroc....* gnu/packages/cran.scm (r-plotroc): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net> Mădălin Ionel Patrașcu
2022-12-12gnu: Add r-gridsvg....* gnu/packages/cran.scm (r-gridsvg): New variable. Mădălin Ionel Patrașcu
2022-12-12gnu: Add r-gunifrac....* gnu/packages/cran.scm (r-gunifrac): New variable. Mădălin Ionel Patrașcu
2022-12-12gnu: Add r-dirmult....* gnu/packages/cran.scm (r-dirmult): New variable. Mădălin Ionel Patrașcu
2022-12-12gnu: Add r-modeest....* gnu/packages/cran.scm (r-modeest): New variable. Mădălin Ionel Patrașcu
2022-12-12gnu: Add r-fbasics....* gnu/packages/cran.scm (r-fbasics): New variable. Mădălin Ionel Patrașcu
2022-12-12gnu: Add r-timeseries....* gnu/packages/cran.scm (r-timeseries): New variable. Mădălin Ionel Patrașcu
2022-12-12gnu: Add r-gss....* gnu/packages/cran.scm (r-gss): New variable. Mădălin Ionel Patrașcu
2022-12-12gnu: Add r-stable....* gnu/packages/cran.scm (r-stable): New variable. Mădălin Ionel Patrașcu
2022-12-12gnu: Add r-rmutil....* gnu/packages/cran.scm (r-rmutil): New variable. Mădălin Ionel Patrașcu
2022-12-12gnu: Add r-statip....* gnu/packages/cran.scm (r-statip): New variable. Mădălin Ionel Patrașcu
2022-12-12gnu: Add r-amplican....* gnu/packages/bioconductor.scm (r-amplican): New variable. Mădălin Ionel Patrașcu
2022-12-12gnu: Add r-waffle....* gnu/packages/cran.scm (r-waffle): New variable. Mădălin Ionel Patrașcu
2022-12-12gnu: Add r-clustercrit....* gnu/packages/cran.scm (r-clustercrit): New variable. Mădălin Ionel Patrașcu
2022-12-12gnu: Add r-harshlight....* gnu/packages/bioconductor.scm (r-harshlight): New variable. Mădălin Ionel Patrașcu
2022-12-12gnu: Add r-altcdfenvs....* gnu/packages/bioconductor.scm (r-altcdfenvs): New variable. Mădălin Ionel Patrașcu
2022-12-12gnu: Add r-makecdfenv....* gnu/packages/bioconductor.scm (r-makecdfenv): New variable. Mădălin Ionel Patrașcu
2022-12-11gnu: yajl: Improve description....* gnu/packages/web.scm (yajl)[synopsis, description]: Edit. Mark up. Note generator. Tobias Geerinckx-Rice
2022-12-11gnu: yajl: Remove trailing #t from phases....* gnu/packages/web.scm (yajl)[arguments]: Don't explicitly return #t from phases. Tobias Geerinckx-Rice
2022-12-11gnu: yajl: Drop custom ‘lib-’ prefix....* gnu/packages/web.scm (yajl): New variable, renamed from… (libyajl): …this one, which is now a DEPRECATED-PACKAGE alias of yajl. Adjust all users. Tobias Geerinckx-Rice
2022-12-12gnu: Remove unused module import....* gnu/packages/version-control.scm: Don't import (guix build python-build-system). Marius Bakke
2022-12-12services: zabbix-server: Increase Shepherd grace period....* gnu/services/monitoring.scm (zabbix-server-shepherd-service)[stop]: Add #:grace-period. Marius Bakke
2022-12-12gnu: ffmpeg: Promote version 5 to the default....* gnu/packages/video.scm (ffmpeg): Alias to FFMPEG-5. (mlt-6)[inpust]: Replace "ffmpeg" with FFMPEG-4. (transcode, libquicktime, ffmpegthumbnailer, mplayer, obs, simplescreenrecorder, handbrake, ffms2, libopenshot, wlstream)[inputs]: Change from FFMPEG to FFMPEG-4. * gnu/packages/arcan.scm (arcan)[inputs]: Likewise. * gnu/packages/astronomy.scm (stackistry, libskry)[inputs]: Likewise. * gnu/packages/audio.scm (aubio, bs1770gain)[inputs]: Likewise. * gnu/packages/education.scm (openboard)[inputs]: Likewise. * gnu/packages/emulators.scm (dolphin-emu, retroarch, pcsxr, ppsspp)[inputs]: Likewise. * gnu/packages/game-development.scm (warsow-qfusion)[inputs]: Likewise. * gnu/packages/games.scm (oshu, hedgewars)[inputs]: Likewise. * gnu/packages/gnunet.scm (libextractor)[inputs]: Likewise. * gnu/packages/graphics.scm (openscenegraph)[inputs]: Likewise. * gnu/packages/image-processing.scm (opencv, paraview-5.9)[inputs]: Likewise. * gnu/packages/julia-jll.scm (julia-ffmpeg-jll)[inputs]: Likewise. * gnu/packages/kde-multimedia.scm (kid3)[inputs]: Likewise. * gnu/packages/kodi.scm (kodi)[inputs]: Likewise. * gnu/packages/linphone.scm (mediastreamer2)[inputs]: Likewise. * gnu/packages/linux.scm (pipewire)[inputs]: Likewise. (pipewire-0.3)[inputs]: Replace "ffmpeg" with FFMPEG. * gnu/packages/mp3.scm (chromaprint)[inputs]: Change from FFMPEG to FFMPEG-4. * gnu/packages/music.scm (musikcube)[inputs]: Likewise. * gnu/packages/rdesktop.scm (freerdp)[inputs]: Likewise. * gnu/packages/qt.scm (qtwebengine-5)[inputs]: Likewise. Marius Bakke
2022-12-12gnu: Sort module imports in (gnu packages scheme)....* gnu/packages/scheme.scm: Sort imports. Remove one duplicate. Marius Bakke