| Age | Commit message (Expand) | Author |
|---|
| 2022-01-10 | gnu: cups-minimal: Remove obsolete phase....* gnu/packages/cups.scm (cups-minimal)[arguments]<#:phases>: Remove
'make-manpages-writable phase.
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
| Sarah Morgensen |
| 2022-01-10 | gnu: clipper: Remove obsolete phase....* gnu/packages/bioinformatics.scm (clipper)[arguments]<#:phases>: Remove
'make-files-writable phase.
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
| Sarah Morgensen |
| 2022-01-10 | gnu: python-biom-format: Remove obsolete phase....* gnu/packages/bioinformatics.scm (python-biom-format)[arguments]
<#:phases>: Remove 'make-files-writable phase.
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
| Sarah Morgensen |
| 2022-01-10 | gnu: tbb-2020: Use ld.gold to work around segfaults in check phase....* gnu/packages/tbb.scm (tbb-2020)
[configure-flags]: Use -fuse-ld=gold in CFLAGS.
[native-inputs]: Add ld-gold-wrapper.
| Maxim Cournoyer |
| 2022-01-10 | gnu: python-igraph: Update to 0.9.8....* gnu/packages/graph.scm (python-igraph): Update to 0.9.8.
[origin]: Fetch from git.
[configure-flags]: Delete argument.
[phases]{build}: No longer override phase.
{check}: Preserve ordering and streamline.
{specify-libigraph-location}: New phase.
[native-inputs]: Remove pkg-config.
[home-page]: Update.
| Maxim Cournoyer |
| 2022-01-10 | gnu: igraph: Update to 0.9.5....* gnu/packages/graph.scm (igraph): Update to 0.9.5.
[source]: Add snippet to fully unbundle.
[build-system]: Use cmake-build-system.
[configure-flags]: Replace all by just '-DBUILD_SHARED_LIBS=ON'.
[native-inputs]: Add pkg-config.
[inputs]{zlib}: Delete input.
{arpack-ng, plfit, suitesparse}: New inputs.
| Maxim Cournoyer |
| 2022-01-10 | gnu: Add plfit....* gnu/packages/graph.scm (plfit): New variable.
| Maxim Cournoyer |
| 2022-01-10 | gnu: python-pysam: Update to 0.18.0....* gnu/packages/bioinformatics.scm (python-pysam): Update to 0.18.0.
[source]: Add FIXME to clarify bundled libraries in use.
[phases]{check}: Streamline.
[propagated-inputs]: Use latest htslib (1.14).
[native-inputs]: Use latest samtools and bcftools (1.14). Remove python-nose.
| Maxim Cournoyer |
| 2022-01-10 | gnu: bcftools: Update to 1.14....* gnu/packages/bioinformatics.scm (bcftools): Update to 1.14.
(bcftools-1.12): New variable.
(bcftools-1.10): Use package/inherit and delete trailing #t.
[name]: Delete field.
| Maxim Cournoyer |
| 2022-01-10 | gnu: samtools: Update to 1.14....* gnu/packages/bioinformatics.scm (samtools): Update to 1.14.
[modules]: Delete argument.
[phases]{install-library, install-headers}: Delete phases. This version no
longer includes the legacy library (it links to htslib directly).
(samtools-1.12): New variable.
| Maxim Cournoyer |
| 2022-01-10 | gnu: htslib: Update to 1.14....* gnu/packages/bioinformatics.scm (htslib): Update to 1.14.
(htslib-1.12): New variable.
(htslib-1.10, htslib-1.9, htslib-1.3)
(htslib-for-samtools-1.2): Normalize style.
| Maxim Cournoyer |
| 2022-01-10 | gnu: python-beautifulsoup4: Update to 4.10.0....* gnu/packages/python-xyz.scm (python-beautifulsoup4): Update to 4.10.0.
[propagated-inputs]{python-html5lib, python-lxml}: New inputs.
[arguments]: Delete field.
(python2-beautifulsoup4): Peg at version 4.9.3.
| Maxim Cournoyer |
| 2022-01-10 | gnu: poetry: Update to 1.1.12....* gnu/packages/python-xyz.scm (poetry): Update to 1.1.12.
[phases]{patch-setup-py}: Relax packaging version requirement.
[propagated-inputs]{python-msgpack-transitional}: Replace with...
{python-msgpack}: ... this.
{python-requests-toolbelt-0.9.1}: Replace with...
{python-requests-toolbelt}: ... this.
{python-msgpack-transitional}: Delete variable.
| Maxim Cournoyer |
| 2022-01-10 | gnu: python-requests-toolbelt: Update to 0.9.1 and enable tests....* gnu/packages/python-web.scm (pyhton-requests-toolbelt): Update to 0.9.1.
[phases]{delete-problematic-tests}: New phase.
(python-requests-toolbelt-0.9.1): Delete variable.
(python2-requests-toolbelt): Likewise.
(python-cloudscraper): Adjust accordingly.
| Maxim Cournoyer |
| 2022-01-10 | gnu: python-cachecontrol: Update to 0.12.10....* gnu/packages/python-web.scm (python-cachecontrol): Update to 0.12.10.
| Maxim Cournoyer |
| 2022-01-10 | gnu: python-os-testr: Propagate python-testtools and python-babel....Lack of python-testtools was causing the sanity-check phase to fail.
* gnu/packages/openstack.scm (python-os-testr)
[native-inputs]{python-testtools, python-babel}: Move to...
[propagated-inputs]: ... here.
| Maxim Cournoyer |
| 2022-01-10 | gnu: webkitgtk: Enable GStreamer GL support....* gnu/packages/webkit.scm (webkitgtk)[configure-flags]: Remove the
'-DUSE_GSTREAMER_GL=OFF' build option.
| Maxim Cournoyer |
| 2022-01-10 | gnu: webkitgtk: Add a note about plugins in description....This is in response to <https://issues.guix.gnu.org/52375>.
* gnu/packages/webkit.scm (webkitgtk): Add a note about GStreamer plugins.
Reported-by: Jack Hill <jackhill@jackhill.us>
| Maxim Cournoyer |
| 2022-01-10 | gnu: python2-matplotlib: Update to 2.2.5....* gnu/packages/python-xyz.scm (python2-matplotlib): Update to 2.2.5.
[phases]: Use G-exp.
{install-jquery-ui}: Delete phase. JQuery is bundled in this release.
[native-inputs]: Remove all exception pkg-config.
[propagated-inputs]: Sort and explicitly specify all inputs to ease
maintenance.
| Maxim Cournoyer |
| 2022-01-10 | gnu: python-matplotlib: Update to 3.5.1 and run tests in parallel....* gnu/packages/python-xyz.scm (python-matplotlib): Update to 3.5.1.
[propagated-inputs]: Add python-fonttools, python-wxpython
and python-packaging.
[native-inputs]: Remove python-mock, python-wheel, unzip and jquery-ui.
Add python-pytest-timeout, python-pytest-xdist, python-setuptools-scm and
python-setuptools-scm-git-archive.
[phases]: Delete trailing #t.
{pretend-version}: New phase.
{install-jquery-ui}: Delete phase.
{check}: Honor TESTS?. Do not skip webagg tests anymore. Invoke using
'-n' argument to run tests in parallel via pytest-xdist.
{configure-environment}: Do not set LD_LIBRARY_PATH nor HOME. Rename
setup.cfg to mplsetup.cfg. Set the backend to Agg.
| Maxim Cournoyer |
| 2022-01-10 | gnu: python-fonttools: Update to 4.28.5....* gnu/packages/python-xyz.scm (python-fonttools): Update to 4.28.5 and hide
the package.
[properties]: New field.
(python-fonttools-with-tests): New variable.
| Maxim Cournoyer |
| 2022-01-10 | gnu: Add python-zopfli....* gnu/packages/python-compression.scm (python-zopfli): New variable.
| Maxim Cournoyer |
| 2022-01-10 | gnu: Add zopfli....* gnu/packages/compression.scm (zopfli): New variable.
| Maxim Cournoyer |
| 2022-01-10 | gnu: Add python-fs....* gnu/packages/python-xyz.scm (python-fs): New variable.
| Maxim Cournoyer |
| 2022-01-10 | gnu: Add python-pyftpdlib....* gnu/packages/python-xyz.scm (python-pyftpdlib): New variable.
| Maxim Cournoyer |
| 2022-01-10 | gnu: Add python-pysendfile....* gnu/packages/python-xyz.scm (python-pysendfile): New variable.
| Maxim Cournoyer |
| 2022-01-10 | gnu: python-pylint: Update to 2.12.2....* gnu/packages/check.scm (python-pylint): Update to 2.12.2.
[phases]{check}: Override phase.
[native-inputs]: Remove python-pytest-benchmark, python-pytest-runner.
[propagated-inputs]: Add python-platformdirs, python-typing-extensions.
[synopsis]: Streamline.
| Maxim Cournoyer |
| 2022-01-10 | gnu: python-platformdirs: Update to 2.4.0, run tests and fix metadata....* gnu/packages/python-xyz.scm (python-platformdirs): Update to 2.4.0.
[phases]{pretend-version}: New phase.
{check}: Override to run tests.
[native-inputs]{python-setuptools-scm}: New input.
| Maxim Cournoyer |
| 2022-01-10 | gnu: python-flit: Update to 3.5.1, enable tests and apply guix style....* gnu/packages/python-xyz.scm (python-flit)[origin]: Fetch from pypi-uri, to
ease updating the package.
[phases]{bootstrap}: Delete phase.
{build, install}: Do a PEP 517 build using pypa-build.
{check}: New phase.
[tests?]: Enable.
[propagated-inputs]{python-pytoml, python-toml}: Remove.
{python-pypa-build, python-tomli-w, python-flit-core, python-requests}: New
inputs.
{python-docutils}: New input, moved from...
[native-inputs]: ... here. Apply guix style.
{python-testpath}: Use the regular python-testpath package.
[synopsis, description]: Re-indent.
| Maxim Cournoyer |
| 2022-01-10 | gnu: python-testpath: Update to 0.5.0 and enable tests....* gnu/packages/check.scm (python-testpath): Update to 0.5.0.
[phases]{relax-requirements}: New phase
{build}: Build using pypa-build's 'build' command.
{check}: Override phase.
{install}: Adjust.
[native-inputs]: Remove python-flit. Add python-pypa-build and python-pytest.
[home-page]: Update.
| Maxim Cournoyer |
| 2022-01-10 | gnu: Add python-tomli-w....* gnu/packages/python-build.scm (python-tomli-w): New variable.
| Maxim Cournoyer |
| 2022-01-10 | gnu: python-astroid: Update to 2.9.0....* gnu/packages/python-xyz.scm (python-astroid): Update to 2.9.0.
[native-inputs]: Add python-typing-extensions.
[properties]: Delete field.
(python2-astroid): Delete variable.
| Maxim Cournoyer |
| 2022-01-10 | gnu: python-typing-extensions: Update to 4.0.1....* gnu/packages/python-xyz.scm (python-typing-extensions): Update to 4.0.1.
[origin]: Use git-fetch.
[tests?]: Disable.
[phases]{unpack, build, install}: New phases.
[native-inputs]: Add python-pypa-build, python-flit-core.
[home-page]: Shorten URL.
| Maxim Cournoyer |
| 2022-01-10 | gnu: python-typing: Update to 3.10.0.0....* gnu/packages/python-xyz.scm (python-typing): Update to 3.10.0.0.
| Maxim Cournoyer |
| 2022-01-10 | gnu: python-flit-core: Propagate python-tomli instead of python-toml....Flit Core apparently requires tomli at runtime rather than toml. This means
we must build a toml-less python-flit-core first, for bootstrapping purposes.
* gnu/packages/python-build.scm (python-flit-core-bootstrap): New variable.
(python-flit-core): Inherit from the above, replacing the propagated
python-toml by python-tomli.
(python-tomli): Adjust accordingly.
| Maxim Cournoyer |
| 2022-01-10 | gnu: python-curio: Disable newly failing 'test_timeout' test....* gnu/packages/python-xyz.scm (python-prettytable)
[phases]{check}: Honor TESTS? and skip the 'test_timeout' test.
| Maxim Cournoyer |
| 2022-01-10 | gnu: glade3: Add python to native inputs....Since commit 5d20d7e1369fc7d93de19c0bd219937d697ceae6, meson no longer
propagates Python.
* gnu/packages/gnome.scm (glade3)[native-inputs]: Add python.
| Maxim Cournoyer |
| 2022-01-10 | gnu: python-typed-ast: Update to 1.5.1....* gnu/packages/python-xyz.scm (python-typed-ast): Update to 1.5.1.
| Maxim Cournoyer |
| 2022-01-10 | gnu: gjs: Build with meson-0.59 to avoid 'install_dir' error....* gnu/packages/gnome.scm (gjs)[meson]: Use meson-0.59.
| Maxim Cournoyer |
| 2022-01-10 | gnu: python-msgpack: Update to 1.0.3....* gnu/packages/python-xyz.scm (python-msgpack): Update to 1.0.3.
(python2-msgpack): Delete variable.
| Maxim Cournoyer |
| 2022-01-10 | gnu: tracker: Add python to native inputs....Since commit 5d20d7e1369fc7d93de19c0bd219937d697ceae6, meson no longer
propagates Python.
* gnu/packages/gnome.scm (tracker)[native-inputs]: Add python.
| Maxim Cournoyer |
| 2022-01-10 | gnu: dconf: Add python to native inputs....Since commit 5d20d7e1369fc7d93de19c0bd219937d697ceae6, meson no longer
propagates Python.
* gnu/packages/gnome.scm (dconf)[native-inputs]: Add python.
| Maxim Cournoyer |
| 2022-01-10 | gnu: gtkmm: Add python to native inputs....Since commit 5d20d7e1369fc7d93de19c0bd219937d697ceae6, meson no longer
propagates Python.
* gnu/packages/gtk.scm (gtkmm)[native-inputs]: Add python.
| Maxim Cournoyer |
| 2022-01-10 | gnu: gtk: Update to 4.4.1....* gnu/packages/patches/gtk-introspection-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/gtk.scm (gtk): Update to 4.4.1.
[origin]: Apply new patch.
[phases]{pre-check}: Set TZDIR.
[native-inputs]: Add graphene, python-pygobject and tzdata.
| Maxim Cournoyer |
| 2022-01-10 | gnu: gusb: Add python to native inputs....Since commit 5d20d7e1369fc7d93de19c0bd219937d697ceae6, meson no longer
propagates Python.
* gnu/packages/gnome.scm (gusb)[native-inputs]: Add python.
| Maxim Cournoyer |
| 2022-01-10 | gnu: pangomm: Add python to native inputs....Since commit 5d20d7e1369fc7d93de19c0bd219937d697ceae6, meson no longer
propagates Python.
* gnu/packages/gtk.scm (pangomm)[native-inputs]: Add python.
| Maxim Cournoyer |
| 2022-01-10 | gnu: atkmm-2.28: Do not propagate two variants of glibmm....* gnu/packages/gtk.scm (atkmm-2.28)[propagated-inputs]: Replace rather than
append glibmm-2.64.
| Maxim Cournoyer |
| 2022-01-10 | gnu: atkmm: Add python to native inputs....Since commit 5d20d7e1369fc7d93de19c0bd219937d697ceae6, meson no longer
propagates Python.
* gnu/packages/gtk.scm (atkmm)[native-inputs]: Add python.
| Maxim Cournoyer |
| 2022-01-10 | gnu: libxkbcommon: Add python to native inputs....Since commit 5d20d7e1369fc7d93de19c0bd219937d697ceae6, meson no longer
propagates Python.
* gnu/packages/xdisorg.scm (libxkbcommon)[native-inputs]: Add python.
| Maxim Cournoyer |
| 2022-01-10 | gnu: wayland-protocols: Add python to native inputs....Since commit 5d20d7e1369fc7d93de19c0bd219937d697ceae6, meson no longer
propagates Python.
* gnu/packages/freedesktop.scm (wayland-protocols)[native-inputs]: Add python.
| Maxim Cournoyer |
