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2015-03-04gnu: icedtea6: split outputs....* gnu/packages/java.scm (icedtea6)[outputs]: Use separate outputs for documentation ("doc"), JDK ("jdk"), and JRE ("out"). * gnu/packages/java.scm (ant)[native-inputs]: Reference "jdk" output of icedtea6 package. * gnu/packages/statistics.scm (r)[inputs]: Reference "jdk" output of icedtea6 package. Ricardo Wurmus
2015-03-04Merge branch 'core-updates'.Ludovic Courtès
2015-03-04gnu: python2-pygtk: fix path to pygobject-codegen-2.0...* gnu/packages/gtk.scm (python2-pygtk)[arguments]: Add phase to patch the path to the pygobject-codegen-2.0 executable. Ricardo Wurmus
2015-03-04gnu: octave: Update to 3.8.2....* gnu/packages/maths.scm (octave): Update to 3.8.2. 宋文武
2015-03-04gnu: enlightenment: Add missing, but used module....* gnu/packages/enlightenment.scm: Add missing, but used module. Tomáš Čech
2015-03-04gnu: rename module and add missing dependency...* gnu/packages/enlightenment.scm: Change module name to be consistent. * gnu/packages/enlightenment.scm: Add missing, but used module. Tomáš Čech
2015-03-04gnu: xterm: Update to 315....* gnu/packages/xorg.scm (xterm): Update to 315. 宋文武
2015-03-04gnu: flac: Update to 1.3.1....* gnu/packages/xiph.scm (flac): Update to 1.3.1. 宋文武
2015-03-04gnu: flac: Propagate libogg....* gnu/packages/xiph.scm (flac): Move libogg to 'propagated-inputs'. 宋文武
2015-03-04gnu: gtk-xfce-engine: Update to 2.10.1....* gnu/packages/xfce.scm (gtk-xfce-engine): Update to 2.10.1. 宋文武
2015-03-03gnu: Add bash-completion....* gnu/packages/bash.scm (bash-completion): New variable. Ludovic Courtès
2015-03-03gnu: git: Install the Bash completion script....* gnu/packages/version-control.scm (git)[arguments]: Add 'install-shell-completion' phase. Ludovic Courtès
2015-03-03gnu: Add search path specifications for 'SSL_CERT_FILE' and 'GIT_SSL_CAINFO'....* gnu/packages/openssl.scm (openssl)[native-search-paths]: Add specification for 'SSL_CERT_FILE'. * gnu/packages/version-control.scm (git)[native-search-paths]: Add specification for 'GIT_SSL_CAINFO'. Ludovic Courtès
2015-03-03gnu: nss-certs: Install only trusted CA certificates....* gnu/packages/certs.scm (nss-certs): Only install certificates that include a non-empty "openssl-trust=" annotation. Mark H Weaver
2015-03-03system: Add /etc/ssl symlink; set needed variables in /etc/profile....* gnu/build/activation.scm (activate-etc): Create /etc/ssl symlink. * gnu/system.scm (etc-directory): Set SSL_CERT_DIR, SSL_CERT_FILE, and GIT_SSL_CAINFO in /etc/profile. Co-Authored-By: Ludovic Courtès <ludo@gnu.org> Mark H Weaver
2015-03-03Revert "system: Add 'x509-certificates' field, and populate /etc/ssl/certs."...This reverts commit e979e6dd523acaa2a089f1b8f44e34c1e5b7d32d. Mark H Weaver
2015-03-03Revert "system: Create a single-file certificate bundle in /etc/ssl/certs."...This reverts commit 993300f6ccfbc9cbe628978690fc98eb63365dbd. Mark H Weaver
2015-03-03gnu: Add rdesktop....* gnu/packages/rdesktop.scm: New file. * gnu-system.am (GNU_SYSTEM_MODULES): Add it. Ludovic Courtès
2015-03-03gnu: vlc: Update to 2.2.0...* gnu/packages/video.scm (vlc): Update to version 2.2.0. Jason Self
2015-03-03gnu: libvorbis: Update to 1.3.5...* gnu/packages/xiph.scm (libvorbis): Update to version 1.3.5. Jason Self
2015-03-03gnu: Add terminology....* gnu/packages/enlightenment.scm (terminology): New variable. Tomáš Čech
2015-03-03gnu: Add emotion-generic-players...* gnu/packages/enlightenment.scm (emotion-generic-players): New variable. Tomáš Čech
2015-03-03gnu: Add evas-generic-loaders...* gnu/packages/enlightenment.scm (evas-generic-loaders): New variable. Tomáš Čech
2015-03-03gnu: Add elementary....* gnu/packages/enlightenment.scm (elementary): New variable. Tomáš Čech
2015-03-03gnu: Add efl....* gnu/packages/enlightenment.scm: New file * gnu/packages/enlightenment.scm (efl): New variable. * gnu-system.am (GNU_SYSTEM_MODULES): Add it. Tomáš Čech
2015-03-03gnu: Add snakemake....* gnu/packages/python.scm (snakemake): New variable. Ricardo Wurmus
2015-03-02gnu: libuv: Update to 1.4.2....* gnu/packages/libevent.scm (libuv): Update to 1.4.2. Update source URI. Add 'file-name' field to origin. Move 'autogen' phase after 'unpack'. Run "sh autogen.sh" instead of "./autogen.sh". Mark H Weaver
2015-03-02gnu: skribilo: Adapt to recently renamed 'guile-reader' variable....This is a followup to commit d6d9f1f715a727e23412fc9339eb2c5358d5a6ce. * gnu/packages/skribilo.scm (skribilo)[propagated-inputs]: Change 'guile-reader/guile-2.0' --> 'guile-reader'. Mark H Weaver
2015-03-02gnu: Add girara....* gnu/packages/gtk.scm (girara): Add variable. Paul van der Walt
2015-03-02gnu: check: Update version to 0.9.14...* gnu/packages/check.scm (check): Update to version 0.9.14. Paul van der Walt
2015-03-02gnu: mpd: Update to 0.19.9....* gnu/packages/mpd.scm (mpd): Update version to 0.19.9. Add boost and icu4c. Paul van der Walt
2015-03-02gnu: Add ruby-hoe....* gnu/packages/ruby.scm (ruby-hoe): New variable. David Thompson
2015-03-02gnu: Add mpdscribble....* gnu/packages/mpd.scm (mpdscribble): New variable. David Thompson
2015-03-02gnu: tcsh: Use ISO-8859-1 when patching "tests/testsuite"....* gnu/packages/tcsh.scm (tcsh)[arguments]: Set %DEFAULT-PORT-ENCODING before substituting "tests/testsuite". Fixes build failure at <http://hydra.gnu.org/build/266962/nixlog/1/raw>. Ludovic Courtès
2015-03-02system: Create a single-file certificate bundle in /etc/ssl/certs....Suggested by Mark H Weaver <mhw@netris.org>. * gnu/system.scm (certificate-bundle): New procedure. (etc-directory): Use it. [profile]: Set 'SSL_CERT_DIR', 'SSL_CERT_FILE', and 'GIT_SSL_CAINFO'. Ludovic Courtès
2015-03-02system: Add 'x509-certificates' field, and populate /etc/ssl/certs....* gnu/system.scm (<operating-system>)[x509-certificates]: New field. (etc-directory): Add #:x509-certificates parameter and honor it. (operating-system-etc-directory): Pass #:x509-certificates in 'etc-directory' call. * doc/guix.texi (operating-system Reference): Document 'x509-certificates'. Ludovic Courtès
2015-03-02gnu: Remove 'guile-reader-for-guile_1.8'....This was a useful example back in July 2012, but not very useful beyond that. * gnu/packages/guile.scm (guile-reader): Turn into a plain package. [source]: Use mirror:// URI. [inputs]: Use GUILE-2.0. [arguments]: Use the site/2.0 directory for --with-moduledir. (guile-reader/guile-1.8, guile-reader/guile-2.0): Remove. Ludovic Courtès
2015-03-02services: xorg: Fix file descriptor leak from SLiM/xinitrc....This reverts commit 9515b745547cff08ad5b958bc54323dab19f29b9. * gnu/services/xorg.scm (xinitrc)[builder](close-all-fdes): Start from file descriptor 3. Ludovic Courtès
2015-03-02gnu: Add llvm-3.6.0 and clang-3.6.0....* gnu/packages/llvm.scm (llvm): Update to 3.6.0. (clang-from-llvm): New procedure. (clang): Update to 3.6.0. Reimplement using 'clang-from-llvm'. (llvm-3.5, clang-3.5): New variables. Mark H Weaver
2015-03-02gnu: Add crossmap....* gnu/packages/bioinformatics.scm (crossmap): New variable. * gnu/packages/patches/crossmap-allow-system-pysam.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. Ricardo Wurmus
2015-03-02gnu: gtk-xfce-engine: Update to 2.10.0....* gnu/packages/xfce.scm (gtk-xfce-engine): Update to 2.10.0. 宋文武
2015-03-02gnu: Add CLIPper....* gnu/packages/bioinformatics.scm (clipper): New variable. Ricardo Wurmus
2015-03-02gnu: Add Scikit-learn....* gnu/packages/python.scm (python-scikit-learn, python2-scikit-learn): New variables. Ricardo Wurmus
2015-03-02gnu: xfconf: Re-enable tests....* gnu/packages/xfce.scm (xfconf)[arguments]: Add #:phases. 宋文武
2015-03-02gnu: Add MACS....* gnu/packages/bioinformatics.scm (macs): New variable. Ricardo Wurmus
2015-03-02gnu: Add pybedtools....* gnu/packages/bioinformatics.scm (python2-pybedtools): New variable. Ricardo Wurmus
2015-03-02gnu: Add pyyaml....* gnu/packages/python.scm (python-pyyaml, python2-pyyaml): New variables. Ricardo Wurmus
2015-03-02gnu: libotr: Update to 4.1.0....* gnu/packages/messaging.scm (libotr): Update to 4.1.0. Mark H Weaver
2015-03-01Revert "services: xorg: Fix file descriptor leak from SLiM/xinitrc."...This reverts commit ec4a4c46efaf2e7373f331654640f1321c0f2e62, because it broke XFCE. Mark H Weaver
2015-03-01gnu: xfconf: Update to 4.12.0....* gnu/packages/xfce.scm (xfconf): Update to 4.12.0. Disable tests. Mark H Weaver