| Age | Commit message (Expand) | Author |
|---|
| 2021-03-17 | gnu: scdoc: Cross-compile....* gnu/packages/man.scm (scdoc)[arguments]: Use CC-FOR-TARGET.
| Tobias Geerinckx-Rice |
| 2021-03-17 | gnu: scdoc: Don't use unstable tarball....The autogenerated tarball was modified upstream.
* gnu/packages/man.scm (scdoc)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
| Tobias Geerinckx-Rice |
| 2021-03-17 | gnu: libtirpc/hurd: Fix package source....Amend the changes in 1a265842e634656411bc7304c4648273f174f65e to properly
access the origin patches from libtirpc.
I noticed this as guix weather didn't work for this package.
* gnu/packages/onc-rpc.scm (libtirpc/hurd)[source]: Call origin-patches
on (package-source libtirpc) rather than the libtirpc package.
| Christopher Baines |
| 2021-03-17 | gnu: lua.scm: Sort package module imports alphabetically....* gnu/packages/lua.scm: Sort package module imports alphabetically.
| Efraim Flashner |
| 2021-03-17 | gnu: python-pygments: Update to 2.7.4 [fixes CVE-2021-27291]....* gnu/packages/python-xyz.scm (python-pygments/fixed): New variable.
(python-pygments)[replacement]: Graft.
| Léo Le Bouter |
| 2021-03-17 | gnu: Add emacs-kotlin-mode....* gnu/packages/emacs-xyz.scm (emacs-kotlin-mode): New variable.
| Oleg Pykhalov |
| 2021-03-17 | gnu: emacs-marginalia: Update to 0.4....* gnu/packages/emacs-xyz.scm (emacs-marginalia): Update to 0.4.
| Nicolas Goaziou |
| 2021-03-17 | gnu: komikku: Update to 0.27.0....* gnu/packages/gnome.scm (komikku): Update to 0.27.0.
[inputs]: Add python-brotli and webkitgtk.
| Leo Prikler |
| 2021-03-17 | gnu: Move lolcode to esolangs....* gnu/packages/lolcode.scm (lci): Move from here...
* gnu/packages/esolangs.scm (lolcode-lci): ... to here.
* gnu/packages/lolcode.scm: Delete file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Adjust accordingly.
| Leo Prikler |
| 2021-03-17 | gnu: tig: Update to 2.5.3....* gnu/packages/version-control.scm (tig): Update to 2.5.3.
Co-authored-by: jgart <jgart@dismail.de>
Co-authored-by: donotshake <donotshake:matrix.org>
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| LibreMiami |
| 2021-03-17 | gnu: hwloc: Add 'release-monitoring-url' property....* gnu/packages/mpi.scm (hwloc-1)[properties]: New field.
| Ludovic Courtès |
| 2021-03-17 | gnu: gnome-autoar: Update to 0.3.1 [fixes CVE-2021-28650]....* gnu/packages/gnome.scm (gnome-autoar): Update to 0.3.1.
| Léo Le Bouter |
| 2021-03-17 | gnu: pzstd: Update to 1.4.9 [fixes CVE-2021-24032]....* gnu/packages/compression.scm (pzstd): Use 'package/inherit' over zstd so any
graft applied to zstd cascades onto pzstd which is built from the same
source.
| Léo Le Bouter |
| 2021-03-17 | gnu: Use PACKAGE/INHERIT in more places....* gnu/packages/algebra.scm (fftwf, fftw-openmpi),
gnu/packages/audio.scm (ztoolkit-rsvg),
gnu/packages/bioinformatics.scm (python2-dendropy),
gnu/packages/boost.scm (boost-with-python2),
gnu/packages/check.scm (python2-mock, python2-pytest-mock),
gnu/packages/cups.scm (hplip-minimal),
gnu/packages/freedesktop.scm (libinput-minimal),
gnu/packages/gettext.scm (gnu-gettext),
gnu/packages/glib.scm (python2-pygobject),
gnu/packages/gnome.scm (gdl-minimal, libsoup-minimal, python2-pyatspi),
gnu/packages/groff.scm (groff-minimal),
gnu/packages/jami.scm (ffmpeg-jami),
gnu/packages/libcanberra.scm (libcanberra/gtk+-2),
gnu/packages/lirc.scm (python2-lirc),
gnu/packages/llvm.scm (clang-runtime-3.5),
gnu/packages/mpi.scm (java-openmpi, openmpi-thread-multiple),
gnu/packages/node.scm (libnode),
gnu/packages/onc-rpc.scm (libtirpc/hurd),
gnu/packages/python-compression.scm (bitshuffle-for-snappy),
gnu/packages/python-crypto.scm (python2-pycrypto, python2-cryptography)
(python2-cryptography, python2-m2crypto),
gnu/packages/python-web.scm (python2-html2text, python2-tornado)
(python2-terminado, python2-ndg-httpsclient, python2-websocket-client)
(python2-rauth, python2-url, python2-s3transfer),
gnu/packages/python-xyz.scm (python2-psutil, python2-serpent)
(python2-humanfriendly, python2-empy, python2-parse-type, python2-polib)
(python2-jsonschema, python2-pystache, python2-cython, python2-numpydoc)
(python2-ipyparallel, python2-traitlets, python2-dbus)
(python2-beautifulsoup4, python2-pep517, python2-flake8, python2-llfuse)
(python2-tlsh, python-file, python2-notebook, python-jupyter-console-minimal)
(python2-contextlib2, python2-promise, python2-anyjson, python2-amqp)
(python2-kombu, python2-billiard, python2-celery, python2-whoosh)
(python2-jellyfish, python-rope, ptpython-2, python2-binaryornot)
(python2-setproctitle, python2-argcomplete, python2-xopen, python2-isort)
(python2-radon, python2-rfc6555, python2-activepapers, python2-send2trash)
(python2-cloudpickle, python2-reparser),
gnu/packages/python.scm (python2-called-python),
gnu/packages/qt.scm (python2-sip, python-pyqt-without-qtwebkit, python2-pyqt)
(python-qscintilla, python-pyqt+qscintilla),
gnu/packages/scanner.scm (sane-backends),
gnu/packages/sdl.scm (guile3.0-sdl2),
gnu/packages/selinux.scm (checkpolicy, libselinux, libsemanage, secilc)
(python-sepolgen, policycoreutils),
gnu/packages/serialization.scm (lua5.1-libmpack, lua5.2-libmpack),
gnu/packages/simulation.scm (fenics),
gnu/packages/statistics.scm (python2-statsmodels),
gnu/packages/texinfo.scm (info-reader),
gnu/packages/wxwidgets.scm (wxwidgets-gtk2, wxwidgets-gtk2-3.1),
gnu/packages/xml.scm (xmlsec-nss),
gnu/packages/xorg.scm (uim-gtk, uim-qt),
guix/build-system/python.scm (package-with-explicit-python)
(strip-python2-variant): Use PACKAGE/INHERIT.
| Mark H Weaver |
| 2021-03-16 | gnu: gvfs: Add 'lint-hidden-cve' property....* gnu/packages/gnome.scm (gvfs)[properties]: New field, marking
CVE-2019-12447, CVE-2019-12448, and CVE-2019-12449 as fixed.
| Mark H Weaver |
| 2021-03-16 | gnu: gnome-shell: Add 'lint-hidden-cve' property....* gnu/packages/gnome.scm (gnome-shell)[properties]: New field, marking
CVE-2019-3820 as fixed.
| Mark H Weaver |
| 2021-03-16 | gnu: qemu: Enable reproducible builds....Fixes <https://issues.guix.gnu.org/47176>. The solution was suggested by
bonzini on OFTC's #qemu channel.
* gnu/packages/virtualization.scm (qemu)[snippet]: Delete bundled meson copy.
[native-inputs]: Add meson-next.
| Maxim Cournoyer |
| 2021-03-16 | gnu: Add meson-next....* gnu/packages/build-tools.scm (meson-next): New variable.
| Maxim Cournoyer |
| 2021-03-16 | gnu: mpg321: Fix CVE-2019-14247....* gnu/packages/patches/mpg321-CVE-2019-14247.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/mp3.scm (mpg321)[source]: Apply it.
Signed-off-by: Léo Le Bouter <lle-bout@zaclys.net>
Signed-off-by: Leo Famulari <leo@famulari.name>
| Kei Kebreau |
| 2021-03-16 | gnu: varnish-modules: Update to 0.17.1 [fixes CVE-2021-28543]....* gnu/packages/web.scm (varnish-modules): Update to 0.17.1.
| Léo Le Bouter |
| 2021-03-16 | gnu: tor: Update to 0.4.5.7 [security fixes]....* gnu/packages/tor.scm (tor): Update to 0.4.5.7.
| Efraim Flashner |
| 2021-03-16 | gnu: snakemake: Add missing inputs....* gnu/packages/python-xyz.scm (snakemake)[propagated-inputs]: Add
python-nbformat, python-pulp, and python-toposort.
| Ricardo Wurmus |
| 2021-03-16 | gnu: Add python-toposort....* gnu/packages/python-xyz.scm (python-toposort): New variable.
| Ricardo Wurmus |
| 2021-03-16 | gnu: Add python-pulp....* gnu/packages/python-xyz.scm (python-pulp): New variable.
| Ricardo Wurmus |
| 2021-03-16 | gnu: Add python-amply....* gnu/packages/python-xyz.scm (python-amply): New variable.
| Ricardo Wurmus |
| 2021-03-16 | gnu: emacs-easy-kill: Update to 0.9.4....* gnu/packages/emacs-xyz.scm (emacs-easy-kill): Update to 0.9.4.
| Nicolas Goaziou |
| 2021-03-16 | gnu: emacs-leaf: Update to 4.4.0....* gnu/packages/emacs-xyz.scm (emacs-leaf): Update to 4.4.0.
| Nicolas Goaziou |
| 2021-03-16 | gnu: python-pikepdf: Update to 2.9.0....* gnu/packages/python-xyz.scm (python-pikepdf): Update to 2.9.0.
| Nicolas Goaziou |
| 2021-03-16 | gnu: asymptote: Update to 2.70....* gnu/packages/plotutils.scm (asymptote): Update to 2.70.
| Nicolas Goaziou |
| 2021-03-16 | gnu: b4: Fix setup.py version incompatibility....* gnu/packages/version-control.scm (b4)[source]: Add snippet to not
require too specific of a version.
Reported-by: Kyle Meyer <kyle@kyleam.com>
| Efraim Flashner |
| 2021-03-16 | gnu: libmemcached: Disable test suite....* gnu/packages/databases.scm (libmemcached): Disable test suite. Removing
trailing #t.
[phases]{fix-configure}: Remove useless group in pattern.
{disable-failing-tests}: Remove phase.
{build-and-install-html-doc}: Order after the build phase.
[home-page]: Please 'guix lint'.
Reported-by: Simon Tournier <zimon.toutoune@gmail.com>
| Maxim Cournoyer |
| 2021-03-16 | gnu: hisat2: Update to 2.2.1....* gnu/packages/bioinformatics.scm (hisat2): Update to 2.2.1.
[source]: Fetch from git repository on Github.
[arguments]: Add phase to build manual; remove trailing #t from other phases.
[native-inputs]: Remove unzip.
[home-page]: Update.
[inputs]: Add python-wrapper.
| Ricardo Wurmus |
| 2021-03-16 | gnu: Remove MongoDB....mongodb 3.4.10 has unpatched CVEs and mongodb 3.4.24 has some files in the
release tarball under the SSPL, therefore we cannot provide mongodb while
upholding to good security standards.
It turns out feff80cec3c97a3df2c20d300be12d67f79d4f22 was right since while
the main license file wasnt altered to SSPL, some files in the tree contain
SSPL headers.
* gnu/packages/databases.scm (go-gopkg.in-mgo.v2): Remove.
* gnu/packages/databases.scm (mongo-tools): Remove.
* doc/guix.texi (mongodb-service-type): Remove.
* gnu/tests/databases.scm (%test-mongodb, %mongodb-os, run-mongodb-test):
Remove.
* gnu/services/databases.scm (mongodb-configuration, mongodb-configuration?,
mongodb-configuration-mongodb, mongodb-configuration-config-file,
mongodb-configuration-data-directory, mongodb-service-type,
%default-mongodb-configuration-file, %mongodb-accounts, mongodb-activation,
mongodb-shepherd-service): Remove.
* gnu/packages/databases.scm (mongodb): Remove.
| Léo Le Bouter |
| 2021-03-16 | gnu: git: Fix git-manpages native input's hash....This is a follow-up to commit ab9629b7c91ff7d6392a03512cfe442823267777.
* gnu/packages/version-control.scm (git)[native-inputs]: Fix git-manpages's
hash.
| Léo Le Bouter |
| 2021-03-16 | gnu: git: Update to 2.31.0....* gnu/packages/version-control.scm (git): Update to 2.31.0.
| Léo Le Bouter |
| 2021-03-16 | gnu: python2-urllib3: Update to 1.26.4 [fixes CVE-2021-28363]....* gnu/packages/python-web.scm (python2-urllib3)[base]: Base off of
python-urllib3/fixed.
| Léo Le Bouter |
| 2021-03-16 | gnu: python-urllib3: Update to 1.26.4 [fixes CVE-2021-28363]....* gnu/packages/python-web.scm (python-urllib3/fixed): New variable.
(python-urllib3)[replacement]: Graft.
| Léo Le Bouter |
| 2021-03-16 | gnu: tmsu: Improve installation....* gnu/packages/file-systems.scm (tmsu)[arguments]: Don't install go
source files. Install binary as tmsu instead of TMSU.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
| Stefan Reichör |
| 2021-03-16 | gnu: glances: Update to 3.1.6....* gnu/packages/python-xyz.scm (glances): Update to 3.1.6.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
| Stefan Reichör |
| 2021-03-15 | Revert some commits that caused `guix pull` to fail....This reverts commits 821e6439212f8e94580674eaaff2ce6752cd3b18 through
8f9fd9b70c7bf166d96a4b1dc8b427f8cdf040b5.
Specifically, these commits caused the build failure of
guix-package-cache.drv like this:
------
(repl-version 0 1 1)
Generating package cache for '/gnu/store/vyz7q26kxxd4z70m24rkkqqhaizdla7g-profile'...
(exception unbound-variable (value #f) (value "Unbound variable: ~S") (value (r-biobase)) (value #f))
| Leo Famulari |
| 2021-03-15 | gnu: r-biocparallel: Build reproducibly....* gnu/packages/bioconductor.scm (r-biocparallel)[arguments]: Add phase
"make-reproducible".
| Ricardo Wurmus |
| 2021-03-15 | gnu: r-delayedarray: Move to (gnu packages bioconductor)....* gnu/packages/bioinformatics.scm (r-delayedarray): Move from here...
* gnu/packages/bioconductor.scm (r-delayedarray): ...to here.
| zimoun |
| 2021-03-15 | gnu: r-rsamtools: Move to (gnu packages bioconductor)....* gnu/packages/bioinformatics.scm (r-rsamtools): Move from here...
* gnu/packages/bioconductor.scm (r-rsamtools): ...to here.
| zimoun |
| 2021-03-15 | gnu: r-biostrings: Move to (gnu packages bioconductor)....* gnu/packages/bioinformatics.scm (r-biostrings): Move from here...
* gnu/packages/bioconductor.scm (r-biostrings): ...to here.
| zimoun |
| 2021-03-15 | gnu: r-biocparallel: Move to (gnu packages bioconductor)....* gnu/packages/bioinformatics.scm (r-biocparallel): Move from here...
* gnu/packages/bioconductor.scm (r-biocparallel): ...to here.
| zimoun |
| 2021-03-15 | gnu: r-biomart: Move to (gnu packages bioconductor)....* gnu/packages/bioinformatics.scm (r-biomart): Move from here...
* gnu/packages/bioconductor.scm (r-biomart): ...to here.
| zimoun |
| 2021-03-15 | gnu: r-annotationdbi: Move to (gnu packages bioconductor)....* gnu/packages/bioinformatics.scm (r-annotationdbi): Move from here...
* gnu/packages/bioconductor.scm (r-annotationdbi): ...to here.
| zimoun |
| 2021-03-15 | gnu: r-biobase: Move to (gnu packages bioconductor)....* gnu/packages/bioinformatics.scm (r-biobase): Move from here...
* gnu/packages/bioconductor.scm (r-biobase): ...to here.
| zimoun |
| 2021-03-15 | gnu: r-genomicranges: Move to (gnu packages bioconductor)....* gnu/packages/bioinformatics.scm (r-genomicranges): Move from here...
* gnu/packages/bioconductor.scm (r-genomicranges): ...to here.
| zimoun |
| 2021-03-15 | gnu: r-xvector: Move to (gnu packages bioconductor)....* gnu/packages/bioinformatics.scm (r-xvector): Move from here...
* gnu/packages/bioconductor.scm (r-xvector): ...to here.
| zimoun |
