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2019-01-12gnu: r-markdown: Update to 0.9.•••* gnu/packages/statistics.scm (r-markdown): Update to 0.9. Ricardo Wurmus
2019-01-12gnu: r-bh: Update to 1.69.0-1.•••* gnu/packages/statistics.scm (r-bh): Update to 1.69.0-1. Ricardo Wurmus
2019-01-12gnu: r-pheatmap: Update to 1.0.12.•••* gnu/packages/statistics.scm (r-pheatmap): Update to 1.0.12. Ricardo Wurmus
2019-01-12gnu: r-mgcv: Update to 1.8-26.•••* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-26. Ricardo Wurmus
2019-01-12gnu: r-codetools: Update to 0.2-16.•••* gnu/packages/statistics.scm (r-codetools): Update to 0.2-16. Ricardo Wurmus
2019-01-12gnu: r-class: Update to 7.3-15.•••* gnu/packages/statistics.scm (r-class): Update to 7.3-15. Ricardo Wurmus
2019-01-12gnu: r-survival: Update to 2.43-3.•••* gnu/packages/statistics.scm (r-survival): Update to 2.43-3. Ricardo Wurmus
2019-01-12gnu: r-argparse: Update to 2.0.0.•••* gnu/packages/cran.scm (r-argparse): Update to 2.0.0. [propagated-inputs]: Add r-r6; remove r-proto. Ricardo Wurmus
2019-01-12gnu: r-callr: Update to 3.1.1.•••* gnu/packages/cran.scm (r-callr): Update to 3.1.1. [propagated-inputs]: Remove r-base64enc. Ricardo Wurmus
2019-01-12gnu: r-readxl: Update to 1.2.0.•••* gnu/packages/cran.scm (r-readxl): Update to 1.2.0. [propagated-inputs]: Add r-progress. Ricardo Wurmus
2019-01-12gnu: r-pracma: Update to 2.2.2.•••* gnu/packages/maths.scm (r-pracma): Update to 2.2.2. Ricardo Wurmus
2019-01-12gnu: r-rcpparmadillo: Update to 0.9.200.5.0.•••* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.9.200.5.0. Ricardo Wurmus
2019-01-12gnu: r-processx: Update to 3.2.1.•••* gnu/packages/cran.scm (r-processx): Update to 3.2.1. [propagated-inputs]: Remove r-assertthat, r-crayon, and r-testthat. Ricardo Wurmus
2019-01-12gnu: r-sjlabelled: Update to 1.0.16.•••* gnu/packages/cran.scm (r-sjlabelled): Update to 1.0.16. [propagated-inputs]: Remove r-tibble and r-tidyselect. Ricardo Wurmus
2019-01-12gnu: r-broom: Update to 0.5.1.•••* gnu/packages/cran.scm (r-broom): Update to 0.5.1. [propagated-inputs]: Add r-generics. Ricardo Wurmus
2019-01-12gnu: Add r-generics.•••* gnu/packages/cran.scm (r-generics): New variable. Ricardo Wurmus
2019-01-12gnu: r-curl: Update to 3.3.•••* gnu/packages/cran.scm (r-curl): Update to 3.3. [inputs]: Add zlib. [native-inputs]: Add pkg-config. Ricardo Wurmus
2019-01-12gnu: r-readr: Update to 1.3.1.•••* gnu/packages/statistics.scm (r-readr): Update to 1.3.1. [propagated-inputs]: Add r-clipr and r-crayon. Ricardo Wurmus
2019-01-12gnu: r-mvabund: Update to 4.0.1.•••* gnu/packages/cran.scm (r-mvabund): Update to 4.0.1. Ricardo Wurmus
2019-01-12gnu: r-writexl: Update to 1.1.•••* gnu/packages/cran.scm (r-writexl): Update to 1.1. Ricardo Wurmus
2019-01-12gnu: r-jsonlite: Update to 1.6.•••* gnu/packages/cran.scm (r-jsonlite): Update to 1.6. Ricardo Wurmus
2019-01-12gnu: python-pillow: Update homepage.•••* gnu/packages/python.scm (python-pillow)[homepage]: Update URL. Kei Kebreau
2019-01-12gnu: python-pillow: Update to 5.4.0•••* gnu/packages/python.scm (python-pillow): Update to 5.4.0. [arguments]: Add 'patch-ldconfig' phase. Kei Kebreau
2019-01-12gnu: Sort package modules in (gnu packages guile).•••* gnu/packages/guile.scm: Sort list of gnu/packages modules. Ricardo Wurmus
2019-01-12gnu: impressive: Update to 0.12.0.•••* gnu/packages/pdf.scm (impressive): Update to 0.12.0. Ricardo Wurmus
2019-01-12gnu: Move Java compression packages to new module.•••* gnu/packages/compression.scm (bitshuffle-for-snappy): Export variable. (java-snappy, java-snappy-1, java-iq80-snappy, java-jbzip2, java-tukaani-xz): Move these variables from here... * gnu/packages/java-compression.scm: ...to this new file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. * gnu/packages/java.scm, gnu/packages/bioinformatics.scm: Adjust module references. Ricardo Wurmus
2019-01-11gnu: Add Bochs.•••* gnu/packages/virtualization.scm (bochs): New variable. Signed-off-by: Leo Famulari <leo@famulari.name> guy fleury iteriteka
2019-01-11gnu: Stellarium: Update to 0.18.3.•••* gnu/packages/astronomy.scm (stellarium): Update to 0.18.3. [arguments]: Skip a broken test. Leo Famulari
2019-01-11gnu: opendht: Make argon2 a propagated input so that its .pc is found.•••* gnu/packages/networking.scm (opendht)[inputs]: Remove argon2. [propagated-inputs]: Add it here. Pierre Neidhardt
2019-01-11gnu: opendht: Use jsoncpp and restbed.•••* gnu/packages/crypto.scm (opendht): Move definition to networking.scm. * gnu/packages/networking.scm (opendht)[inputs]: Add jsoncpp and restbed. Pierre Neidhardt
2019-01-11gnu: Add restbed.•••* gnu/packages/networking.scm (restbed): New variable. Pierre Neidhardt
2019-01-11gnu: libupnp: Update to 1.6.25.•••* gnu/packages/upnp.scm (libupnp): Update to 1.6.25. Pierre Neidhardt
2019-01-11gnu: kinit: Use KDEINIT5_LIBRARY_PATH to search for dynlibs.•••Using LIBRARY_PATH was introduced in 16b8aff85bcdb9799496c4a27257210cd45158e5, but is wrong since this variable is used by the compiler (gcc) at link time. * gnu/packages/patches/kinit-kdeinit-libpath.patch: Change LIBRARY_PATH to KDEINIT5_LIBRARY_PATH. * gnu/packages/kde-frameworks.scm (kinit)[native-search-paths]: New field. Hartmut Goebel
2019-01-11Revert "gnu: emacs-ghub: Update to 3.2.0."•••This change should be applied once we update our magit package. This reverts commit b96f0e6ff9f8f36d250b5ae94a908272babb35cf. Jelle Licht
2019-01-11gnu: Add emacs-general.•••[[PGP Signed Part:Good signature from 31BC8105F659D425 Gabriel Hondet <gabrielhondet@gmail.com> (trust undefined) created at 2019-01-06T10:42:43+0100 using RSA]] * gnu/packages/emacs.scm (emacs-general): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Gabriel Hondet
2019-01-11services: Deprecate a few more service procedures.•••These procedures were already either undocumented (and de facto deprecated) or documented as deprecated or redundant. * gnu/services/base.scm (guix-service, guix-publish-service): Mark as deprecated. * gnu/services/mcron.scm (mcron-service): Likewise. * gnu/services/networking.scm (tor-service): Likewise. * doc/guix.texi (Scheduled Job Execution): Remove 'mcron-service' and adjust example. (Networking Services): Remove 'tor-service'. * gnu/tests/base.scm (%mcron-os): Use 'mcron-service-type' instead of 'mcron-service'. * gnu/tests/networking.scm (%tor-os): Use 'tor-service-type' instead of 'tor-service'. * tests/guix-system.sh: Likewise. Ludovic Courtès
2019-01-11tests: Nitpick on Docker test.•••This is a followup to 7d8a4eeacc534c8742e0b22d855aa73e5ab66b7f. * gnu/local.mk (GNU_SYSTEM_MODULES): Add gnu/tests/docker.scm. * gnu/tests/docker.scm: Update copyright line. Ludovic Courtès
2019-01-11gnu: wine-staging: Hard-code vulkan loader.•••* gnu/packages/wine.scm (wine-staging-patchset-data): Fix indentation. * gnu/packages/wine.scm (wine-staging)[arguments]: Add 'wrap-executable phase. * gnu/packages/wine.scm (wine64-staging)[arguments]: Add 'wrap-executable phase. Copy the real wine-preloader instead of the wrapped version. Rutger Helling
2019-01-11gnu: jamm: Remove broken "build" phase.•••* gnu/packages/bioinformatics.scm (jamm)[arguments]: Remove "build" phase. Ricardo Wurmus
2019-01-11services: docker: Update comment.•••* gnu/services/docker.scm (docker-shepherd-service): Update comment. Danny Milosavljevic
2019-01-10gnu: gexiv2: Update to 0.10.10.•••* gnu/packages/gnome.scm (gexiv2): Update to 0.10.10. Leo Famulari
2019-01-10gnu: Update texlive packages.•••* guix/build-system/texlive.scm (%texlive-tag, %texlive-revision): Update to texlive-2018.2, revision 49435. * gnu/packages/tex.scm (texlive-dvips, texlive-generic-unicode-data, texlive-generic-dehyph-exptl, texlive-generic-hyph-utf8, texlive-fontname, texlive-fonts-cm, texlive-tex-plain, texlive-latex-base, texlive-latex-graphics, texlive-latex-graphics, texlive-latex-oberdiek, texlive-latex-tools, texlive-latex-l3kernel, texlive-latex-l3packages, texlive-latex-fontspec, texlive-latex-amsmath, texlive-latex-amscls, texlive-latex-babel, texlive-latex-cyrillic, texlive-latex-eqparbox, texlive-latex-ifplatform, texlive-latex-etoolbox, texlive-latex-galois, texlive-latex-polyglossia, texlive-tex-texinfo, texlive-latex-changebar, texlive-latex-fancyhdr, texlive-latex-overpic, texlive-latex-parskip, texlive-metapost, texlive-latex-ucs, texlive-generic-pdftex, texlive-latex-media9, texlive-latex-ocgx2, texlive-latex-koma-script, texlive-generic-listofitems, texlive-bibtex, texlive-context-base): Update hashes. (texlive-latex-fontspec)[arguments]: Remove custom build target. (texlive-latex-dinbrief)[arguments]: Add build phase "fix-encoding-error". (texlive-latex-xkeyval): New variable. (texlive-latex-pstool)[source]: Fetch from new location. [build-system]: Use trivial-build-system. [arguments]: Write simple builder. [propagated-inputs]: Add texlive-latex-l3kernel, texlive-latex-tools, and texlive-latex-xkeyval. [synopsis]: Fix typo. Ricardo Wurmus
2019-01-10gnu: irssi: Update to 1.1.2 [fixes CVE-2019-5882].•••* gnu/packages/irc.scm (irssi): Update to 1.1.2. Kei Kebreau
2019-01-10gnu: docker: Booby-trap "Command" and "LookPath" calls.•••* gnu/packages/docker.scm (docker)[arguments]<#:phases>[patch-paths]: Booby-trap "Command" and "LookPath" calls. Danny Milosavljevic
2019-01-10gnu: opendht: Update to 1.8.1.•••* gnu/packages/crypto.scm (opendht): Update to 1.8.1. [source]: Remove snippet that deletes argon2, which is no longer bundled. [arguments]: Add "--with-argon2" to use system argon2. [license]: Update to GPLv3+ following the README and source headers. Pierre Neidhardt
2019-01-10gnu: Add libsecp256k1.•••* gnu/packages/crypto.scm (libsecp256k1): New variable. Pierre Neidhardt
2019-01-10gnu: crypto++: Update to 8.0.0.•••* gnu/packages/crypto.scm (crypto++): Update to 8.0.0. [arguments]: Build shared library. [arguments]: Generate .pc file. Pierre Neidhardt
2019-01-10services: docker: Use more minimal service requrements.•••* gnu/services/docker.scm (docker-service-type)[requirement]: Add file-system-/sys/fs/cgroup/blkio, file-system-/sys/fs/cgroup/cpu, file-system-/sys/fs/cgroup/cpuset, file-system-/sys/fs/cgroup/devices, file-system-/sys/fs/cgroup/memory. Remove elogind. Danny Milosavljevic
2019-01-10services: docker: Clarify service-extension shepherd-root-service-type.•••* gnu/services/docker.scm (docker-service-type)[extensions]: Clarify service-extension shepherd-root-service-type. Danny Milosavljevic
2019-01-10gnu: sct: Correct license.•••* gnu/packages/xdisorg.scm (sct)[license]: Change to non-copyleft. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Nam Nguyen
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