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2022-06-01gnu: icedove: Update to 91.10.0 [fixes CVE-2022-1834]....* gnu/packages/gnuzilla.scm (icedove): Update to 91.10.0. Jonathan Brielmaier
2022-05-29gnu: tractor: Update to 3.13....* gnu/packages/tor.scm (tractor): Update to 3.13. Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr> Danial Behzadi
2022-05-29gnu: fortune-mod: Fix fortune directory....It now matches the one given in the fortune(6) man page. * gnu/packages/games.scm (fortune-mode)[arguments]: Install to /share rather than /local/share/games. Shorten the 'fix-install-directory phase. Tobias Geerinckx-Rice
2022-06-01gnu: pigx-scrnaseq: Update to 1.1.9....* gnu/packages/bioinformatics.scm (pigx-scrnaseq): Update to 1.1.9. [arguments]: Remove 'autoreconf phase. [native-inputs]: Remove autoconf and automake. Ricardo Wurmus
2022-06-01gnu: pigx-bsseq: Update to 0.1.7....* gnu/packages/bioinformatics.scm (pigx-bsseq): Update to 0.1.7. [source]: Remove patch. [arguments]: Remove 'autoreconf phase. [native-inputs]: Remove automake and autoconf. * gnu/packages/patches/pigx-bsseq-no-citeproc.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove patch. Ricardo Wurmus
2022-06-01gnu: pigx-chipseq: Update to 0.1.0....* gnu/packages/bioinformatics.scm (pigx-chipseq): Update to 0.1.0. [source]: Remove patch. [arguments]: Remove 'autoreconf phase. [native-inputs]: Remove autoconf and automake. * gnu/packages/patches/pigx-chipseq-no-citeproc.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove patch. Ricardo Wurmus
2022-06-01gnu: vim: Update to 8.2.5048....* gnu/packages/vim.scm (vim): Update to 8.2.5048. [arguments]: Patch another instance of '/bin/sh'. Efraim Flashner
2022-06-01gnu: pigx-rnaseq: Update to 0.1.0....* gnu/packages/bioinformatics.scm (pigx-rnaseq): Update to 0.1.0. [arguments]: Remove phase 'patch-knitr. Ricardo Wurmus
2022-06-01gnu: pigx-rnaseq: Update to 0.0.21....* gnu/packages/bioinformatics.scm (pigx-rnaseq): Update to 0.0.21. Ricardo Wurmus
2022-06-01gnu: pigx-rnaseq: Fix build....* gnu/packages/bioinformatics.scm (pigx-rnaseq)[arguments]: Add phase 'patch-knitr. Ricardo Wurmus
2022-05-29gnu: gnome-commander: Update to 1.14.2....* gnu/packages/gnome.scm (gnome-commander): Update to 1.14.2. Tobias Geerinckx-Rice
2022-05-29gnu: angband: Update to 4.2.4....* gnu/packages/games.scm (angband): Update to 4.2.4. [arguments]: Don't explicitly return #t from phases. Tobias Geerinckx-Rice
2022-05-29gnu: freeipmi: Update to 1.6.9....* gnu/packages/freeipmi.scm (freeipmi): Update to 1.6.9. Tobias Geerinckx-Rice
2022-05-29gnu: corefreq: Update to 1.90.1....* gnu/packages/linux.scm (corefreq): Update to 1.90.1. Tobias Geerinckx-Rice
2022-05-29gnu: services: Update setuid service description....* gnu/services.scm (setuid-program-service-type)[description]: Remove ‘root’, add ‘setgid’. Tobias Geerinckx-Rice
2022-05-29gnu: libfprint: Update to 1.94.4....* gnu/packages/freedesktop.scm (libfprint): Update to 1.94.4. Tobias Geerinckx-Rice
2022-05-29gnu: fprintd: Update to 1.94.2....* gnu/packages/freedesktop.scm (fprintd): Update to 1.94.2. Tobias Geerinckx-Rice
2022-05-29gnu: fprintd: Remove input labels....* gnu/packages/freedesktop.scm (fprintd)[native-inputs]: Remove input labels. Tobias Geerinckx-Rice
2022-05-29gnu: fprintd: Fix build....* gnu/packages/freedesktop.scm (fprintd)[native-inputs]: Add python. Tobias Geerinckx-Rice
2022-05-29gnu: beancount: Update to 2.3.5....* gnu/packages/finance.scm (beancount): Update to 2.3.5. Tobias Geerinckx-Rice
2022-05-29gnu: caf: Update to 0.18.6....* gnu/packages/cpp.scm (caf): Update to 0.18.6. Tobias Geerinckx-Rice
2022-05-29gnu: quazip: Update to 1.3....* gnu/packages/compression.scm (quazip): Update to 1.3. Tobias Geerinckx-Rice
2022-05-29gnu: foomatic-filters: Use project home page....* gnu/packages/cups.scm (foomatic-filters)[home-page]: Point upstream. Tobias Geerinckx-Rice
2022-06-01gnu: Add sylamer....* gnu/packages/bioinformatics.scm (sylamer): New variable. Ricardo Wurmus
2022-05-31gnu: linux-libre 5.10: Update to 5.10.119....* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.119. (linux-libre-5.10-pristine-source): Update hash. Leo Famulari
2022-05-31gnu: linux-libre 5.15: Update to 5.15.44....* gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.44. (linux-libre-5.15-pristine-source): Update hash. Leo Famulari
2022-05-31gnu: linux-libre: Update to 5.17.12....* gnu/packages/linux.scm (linux-libre-5.17-version): Update to 5.17.12. (linux-libre-5.17-pristine-source): Update hash. Leo Famulari
2022-05-31gnu: Add r-gsalib....* gnu/packages/cran.scm (r-gsalib): New variable. Ricardo Wurmus
2022-05-31gnu: Add glibc-locales-2.32....* gnu/packages/base.scm (glibc-locales-2.32): New variable. Ricardo Wurmus
2022-05-31gnu: Add glibc-locales-2.31....* gnu/packages/base.scm (glibc-locales-2.31): New variable. Ricardo Wurmus
2022-05-31gnu: Add glibc-locales-2.30....* gnu/packages/base.scm (glibc-locales-2.30): New variable. Ricardo Wurmus
2022-05-31gnu: Add glibc-2.32....* gnu/packages/base.scm (glibc-2.32): New variable. Ricardo Wurmus
2022-05-31gnu: Remove python2-biopython....* gnu/packages/bioinformatics.scm (python2-biopython): Delete variable. Maxim Cournoyer
2022-05-31gnu: Remove pplacer-scripts....* gnu/packages/bioinformatics.scm (pplacer-scripts): Delete variable. Maxim Cournoyer
2022-05-31gnu: Remove pplacer....* gnu/packages/bioinformatics.scm (pplacer): Delete variable. Maxim Cournoyer
2022-05-31gnu: Remove python2-pytest-cov....* gnu/packages/check.scm (python2-pytest-cov): Delete variable. Maxim Cournoyer
2022-05-31gnu: Remove python2-called-python....* gnu/packages/python.scm (python2-called-python): Delete variable. Maxim Cournoyer
2022-05-31gnu: Remove python-prompt-toolkit-2....* gnu/packages/python-xyz.scm (python-prompt-toolkit-2): Delete variable. (python-prompt-toolkit)[properties]: Delete field. (python-jupyter-console): Replace python-prompt-toolkit-2 with python-prompt-toolkit. Maxim Cournoyer
2022-05-31gnu: Remove python2-setuptools....* gnu/packages/python-xyz.scm (python2-setuptools): Delete variable. (python-setuptools)[properties]: Delete field. * gnu/packages/syncthing.scm (syncthing-gtk): Delete commented native input. * guix/lint.scm (check-inputs-should-not-be-an-input-at-all): Remove obsolete entries. Maxim Cournoyer
2022-05-31gnu: Remove python2-checkm-genome....* gnu/packages/bioinformatics.scm (python2-checkm-genome): Delete variable. Maxim Cournoyer
2022-05-31gnu: qtwebengine: Re-style inputs....* gnu/packages/qt.scm (qtwebengine)[phases]: Delete trailing #t. {substitute-source}: Use search-input-file. [inputs, native-inputs]: Use new style. Maxim Cournoyer
2022-05-31gnu: Remove python2-backports-csv....* gnu/packages/python-xyz.scm (python2-backports-csv): Delete variable. Maxim Cournoyer
2022-05-31gnu: python2-six: Disable tests....* gnu/packages/python-xyz.scm (python2-six)[native-inputs]: Clear. [phases]: Delete check phase. Maxim Cournoyer
2022-05-31gnu: Remove python2-fonttools....* gnu/packages/python-xyz.scm (python2-fonttools): Delete variable. (python-fonttools)[properties]: Delete field. Maxim Cournoyer
2022-05-31gnu: Remove python2-py....* gnu/packages/python-xyz.scm (python2-py): Delete variable. Maxim Cournoyer
2022-05-31gnu: Remove python2-pyparsing....* gnu/packages/python-build.scm (python2-pyparsing): Delete variable. (python-pyparsing)[properties]: Delete field. Maxim Cournoyer
2022-05-31gnu: Remove python2-setuptools-scm....* gnu/packages/python-xyz.scm (python2-setuptools-scm): Delete variable. (python-lfdfiles)[properties]: Delete field. Maxim Cournoyer
2022-05-31gnu: Remove python2-six-bootstrap....* gnu/packages/python-build.scm (python2-six-bootstrap): Delete variable. Maxim Cournoyer
2022-05-31gnu: Remove python2-pyxdg....* gnu/packages/freedesktop.scm (python2-pyxdg): Delete variable. Maxim Cournoyer
2022-05-31gnu: Remove python2-wcwidth....* gnu/packages/python-xyz.scm (python2-wcwidth): Delete variable. Maxim Cournoyer