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2018-03-03gnu: Add java-cisd-jhdf5....* gnu/packages/java.scm (java-cisd-jhdf5): New variable. Ricardo Wurmus
2018-03-03gnu: Add java-cisd-args4j....* gnu/packages/java.scm (java-cisd-args4j): New variable. Ricardo Wurmus
2018-03-03gnu: Add java-cisd-base....* gnu/packages/java.scm (java-cisd-base): New variable. Ricardo Wurmus
2018-03-03gnu: Add texlive-fonts-iwona....* gnu/packages/tex.scm (texlive-fonts-iwona): New variable. Ricardo Wurmus
2018-03-03services: messaging: Prosody config supports file-like objects....* doc/guix.texi (Messaging Services): Update accordingly. * gnu/services/configuration.scm (serialize-configuration, serialize-maybe-stem, serialize-package): Return strings or string-valued gexps (these procedures were only used for their side-effects). * gnu/services/messaging.scm (serialize-field, serialize-field-list, enclose-quotes, serialize-raw-content, serialize-ssl-configuration, serialize-virtualhost-configuration-list, serialize-int-component-configuration-list, serialize-ext-component-configuration-list, serialize-virtualhost-configuration, serialize-int-component-configuration, serialize-ext-component-configuration, serialize-prosody-configuration): Return strings or string-valued gexps and stop printing. (prosody-activation): Use SERIALIZE-PROSODY-CONFIGURATION's return value with MIXED-TEXT-FILE instead of using its output with PLAIN-FILE. (serialize-non-negative-integer, serialize-non-negative-integer-list): Convert numbers to strings. (file-object?, serialize-file-object, file-object-list?, serialize-file-object-list): New procedures. (ssl-configuration)[capath, cafile], (prosody-configuration)[plugin-paths, groups-file]: Replace FILE-NAME with FILE-OBJECT. * guix/gexp.scm (file-like?): New exported procedure. Clément Lassieur
2018-03-03gnu: dictionaries: Add copyright line....* gnu/packages/dictionaries.scm: Add copyright line. Nicolas Goaziou
2018-03-03gnu: wireshark: Update to 2.4.5....* gnu/packages/networking.scm (wireshark): Update to 2.4.5. Nicolas Goaziou
2018-03-03gnu: grammalecte: Update to 0.6.2....* gnu/packages/dictionaries.scm (grammalecte): Update to 0.6.2. [arguments]: Remove. Nicolas Goaziou
2018-03-03gnu: Add ruby-iruby....* gnu/packages/ruby.scm (ruby-iruby): New variable. Christopher Baines
2018-03-03gnu: Add ruby-mimemagic....* gnu/packages/ruby.scm (ruby-mimemagic): New variable. Christopher Baines
2018-03-03gnu: Add ruby-data_uri....* gnu/packages/ruby.scm (ruby-data_uri): New variable. Christopher Baines
2018-03-03gnu: Add ruby-cztop....* gnu/packages/ruby.scm (ruby-cztop): New variable. Christopher Baines
2018-03-03gnu: Add ruby-czmq-ffi-gen....* gnu/packages/ruby.scm (ruby-czmq-ffi-gen): New variable. Christopher Baines
2018-03-03gnu: Add ruby-bond....* gnu/packages/ruby.scm (ruby-bond): New variable. Christopher Baines
2018-03-03gnu: Add ruby-bacon-bits....* gnu/packages/ruby.scm (ruby-bacon-bits): New variable. Christopher Baines
2018-03-03gnu: Add ruby-mocha-on-bacon....* gnu/packages/ruby.scm (ruby-mocha-on-bacon): New variable. Christopher Baines
2018-03-03gnu: networking: Add czmq....* gnu/packages/networking.scm (czmq): New variable. Christopher Baines
2018-03-03gnu: ghc-refact: Fix typo in description....* gnu/packages/haskell.scm (ghc-refact)[description]: Fix typo. Tobias Geerinckx-Rice
2018-03-03gnu: quagga: Update to 1.2.4....* gnu/packages/networking.scm (quagga): Update to 1.2.4. Tobias Geerinckx-Rice
2018-03-03gnu: conky: Remove redundant MKDIR-P....* gnu/packages/conky.scm (conky)[arguments]: Remove redundant MKDIR-P. Tobias Geerinckx-Rice
2018-03-03gnu: sslh: Update to 1.19c....* gnu/packages/networking.scm (sslh): Update to 1.19c. Tobias Geerinckx-Rice
2018-03-03gnu: wv: Edit description....Wv is still unmaintained – this just makes it more obvious. * gnu/packages/wv.scm (wv)[description]: Mention the product versions in addition to internal file format ones. Align more closely with the upstream description. Tobias Geerinckx-Rice
2018-03-03gnu: libseccomp: Update to 2.3.3....* gnu/packages/linux.scm (libseccomp): Update to 2.3.3. Tobias Geerinckx-Rice
2018-03-03gnu: hdparm: Update to 9.54....* gnu/packages/linux.scm (hdparm): Update to 9.54. Tobias Geerinckx-Rice
2018-03-03gnu: sdl2: Update to 2.0.8....* gnu/packages/sdl.scm (sdl2): Update to 2.0.8. Tobias Geerinckx-Rice
2018-03-03gnu: r-httpuv: Update to 1.3.6.2....* gnu/packages/web.scm (r-httpuv): Update to 1.3.6.2. Ricardo Wurmus
2018-03-03gnu: r-dbi: Update to 0.8....* gnu/packages/statistics.scm (r-dbi): Update to 0.8. Ricardo Wurmus
2018-03-03gnu: r-performanceanalytics: Update to 1.5.2....* gnu/packages/cran.scm (r-performanceanalytics): Update to 1.5.2. [propagated-inputs]: Add r-quadprog. [native-inputs]: Remove gfortran. Ricardo Wurmus
2018-03-03linux-initrd: Add virtio modules to '%base-initrd-modules'....Fixes a regression in installation tests, whereby 'guix system init' would report that virtio modules are missing for the target devices. In practice virtio modules were always available since 'base-initrd' was always called with #:virtio? #t. This commit simply moves them to '%base-initrd-modules' so that 'guix system' knows they're available. Reported by Danny Milosavljevic <dannym@scratchpost.org> at <https://debbugs.gnu.org/cgi/bugreport.cgi?bug=30629#112>. * gnu/system/linux-initrd.scm (default-initrd-modules): Add virtio modules. (base-initrd): Remove #:virtio? and 'virtio-modules'. * gnu/system/vm.scm (expression->derivation-in-linux-vm) (system-qemu-image, virtualized-operating-system): Remove uses of #:virtio?. * doc/guix.texi (Initial RAM Disk): Update 'base-initrd' doc. Ludovic Courtès
2018-03-03system: beaglebone-black: Use 'initrd-modules'....* gnu/system/examples/beaglebone-black.tmpl: Use 'initrd-modules' instead of 'initrd'. Ludovic Courtès
2018-03-03vm: Add missing modules to the 'expression->derivation-in-linux-vm' initrd....Fixes a regression introduced in bc499b113a598c0e7863da9887a4133472985713, whereby the default initrd used by 'expression->derivation-in-linux-vm' would lack all the usual modules: virtio, nls_iso8859-1, etc. * gnu/system/vm.scm (expression->derivation-in-linux-vm): Pass #:linux-modules to 'base-initrd'. Ludovic Courtès
2018-03-03linux-initrd: 'file-system-modules' returns the right module list....Fixes a bug whereby, for an "iso9660" file system, it would return '("iso9660" "isofs"), i.e., both the key and the value. Reported by Danny Milosavljevic <dannym@scratchpost.org> at <https://debbugs.gnu.org/cgi/bugreport.cgi?bug=30629#115>. * gnu/system/linux-initrd.scm (lookup-procedure): 'vhash-assoc' returns a key/value pair; match it. Ludovic Courtès
2018-03-02gnu: cutadapt: Update to 1.16....* gnu/packages/bioinformatics.scm (cutadapt): Update to 1.16. [source]: Fetch via git. [arguments]: Remove. [native-inputs]: Replace python-nose with python-pytest. Ricardo Wurmus
2018-03-02gnu: python-xopen: Update to 0.3.2....* gnu/packages/python.scm (python-xopen): Update to 0.3.2. Ricardo Wurmus
2018-03-02gnu: Add r-hpar....* gnu/packages/bioconductor.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. Ricardo Wurmus
2018-03-02gnu: Add r-powerplus....* gnu/packages/cran.scm (r-powerplus): New variable. Ricardo Wurmus
2018-03-02gnu: Add r-np....* gnu/packages/cran.scm (r-np): New variable. Ricardo Wurmus
2018-03-02gnu: Add r-phontools....* gnu/packages/cran.scm (r-phontools): New variable. Ricardo Wurmus
2018-03-02gnu: Add r-complexplus....* gnu/packages/cran.scm (r-complexplus): New variable. Ricardo Wurmus
2018-03-02gnu: Add r-expm....* gnu/packages/cran.scm (r-expm): New variable. Ricardo Wurmus
2018-03-02gnu: Add r-trend....* gnu/packages/cran.scm (r-trend): New variable. Ricardo Wurmus
2018-03-02gnu: Add r-cubature....* gnu/packages/cran.scm (r-cubature): New variable. Ricardo Wurmus
2018-03-02gnu: Add r-urca....* gnu/packages/cran.scm (r-urca): New variable. Ricardo Wurmus
2018-03-02gnu: Add r-fractal....* gnu/packages/cran.scm (r-fractal): New variable. Ricardo Wurmus
2018-03-02gnu: Add r-extradistr....* gnu/packages/cran.scm (r-extradistr): New variable. Ricardo Wurmus
2018-03-02gnu: Add r-tsa....* gnu/packages/cran.scm (r-tsa): New variable. Ricardo Wurmus
2018-03-02gnu: Add r-wmtsa....* gnu/packages/cran.scm (r-wmtsa): New variable. Ricardo Wurmus
2018-03-02gnu: Add r-tseries....* gnu/packages/cran.scm (r-tseries): New variable. Ricardo Wurmus
2018-03-02gnu: Add r-quantmod....* gnu/packages/cran.scm (r-quantmod): New variable. Ricardo Wurmus
2018-03-02gnu: Add r-sapa....* gnu/packages/cran.scm (r-sapa): New variable. Ricardo Wurmus
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