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2017-08-03gnu: r-rcpp: Move to (gnu packages cran)....* gnu/packages/statistics.scm (r-rcpp): Move from here... * gnu/packages/cran.scm (r-rcpp): ...to here. Ricardo Wurmus
2017-08-03gnu: r-rcpp: Update to 0.12.12....* gnu/packages/statistics.scm (r-rcpp): Update to 0.12.12. Ricardo Wurmus
2017-08-03gnu: r-plogr: Move to (gnu packages cran)....* gnu/packages/statistics.scm (r-plogr): Move from here... * gnu/packages/cran.scm (r-plogr): ...to here. Ricardo Wurmus
2017-08-03gnu: Add r-glue....* gnu/packages/cran.scm (r-glue): New variable. Ricardo Wurmus
2017-08-03gnu: Add grub-hybrid....* gnu/packages/bootloaders.scm (grub-hybrid): New variable. Danny Milosavljevic
2017-08-03gnu: htseq: Use PyPI URI....This is a follow-up to 92971d68ac942cd4a38092b4ccb20a8192a56aaf. * gnu/packages/bioinformatics.scm (htseq)[source]: Use 'pypi-uri'. Ben Woodcroft
2017-08-03gnu: htseq: Update to 0.9.1....* gnu/packages/bioinformatics.scm (htseq): Update to 0.9.1. [arguments]: Use python-3 by removing field. [native-inputs]: Add 'python-cython'. [propagated-inputs]: Use python3 numpy package. [inputs]: Use python3 pysam package. Add 'python-matplotlib'. (python2-htseq): New variable. (clipper)[inputs]: Use it. Ben Woodcroft
2017-08-03gnu: vc: Limit to x86_64 and i686....* gnu/packages/maths.scm (vc)[supported-systems]: New field. Efraim Flashner
2017-08-03gnu: openscenegraph: Add 'Release' configure flag....* gnu/packages/graphics.scm (openscenegraph)[arguments]: Add "-DCMAKE_BUILD_TYPE=Release". Manolis Ragkousis
2017-08-03gnu: Add LeoCAD....* gnu/packages/lego.scm (leocad): New variable. Eric Bavier
2017-08-03gnu: youtube-dl: Update to 2017.07.30.1....* gnu/packages/video.scm (youtube-dl): Update to 2017.07.30.1. Tobias Geerinckx-Rice
2017-08-03gnu: tor: Update to 0.3.0.10....* gnu/packages/tor.scm (tor): Update to 0.3.0.10. Tobias Geerinckx-Rice
2017-08-03activation: Make sure /etc exists....Fixes <http://bugs.gnu.org/27146>. Reported by ng0 <ng0@pragmatique.xyz>. * gnu/build/activation.scm (activate-etc): Add call to 'mkdir-p'. Ludovic Courtès
2017-08-02gnu: glibc@2.22: Fix security issues....Fixes CVE-2015-{5180,7547}, CVE-2016-{3075,3706,4429}. * gnu/packages/base.scm (glibc@2.22)[source]: Add patches. * gnu/packages/patches/glibc-CVE-2015-7547.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. Efraim Flashner
2017-08-02gnu: glibc@2.23: Fix CVE-2015-5180, CVE-2016-{3075,3706,4429}....* gnu/packages/base.scm (glibc@2.23)[source]: Add patches. * gnu/packages/patches/glibc-CVE-2016-3075.patch, gnu/packages/patches/glibc-CVE-2016-3706.patch, gnu/packages/patches/glibc-CVE-2016-4429.patch: New files. * gnu/local.mk (dist_patch_DATA): Register them. Efraim Flashner
2017-08-02gnu: glibc@2.24: Fix CVE-2015-5180....* gnu/packages/base.scm (glibc@2.24)[source]: Add patch. * gnu/packages/patches/glibc-CVE-2015-5180.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. Efraim Flashner
2017-08-02gnu: python2-conda: Fix build by building with enum34....* gnu/packages/package-management.scm (python2-conda): Use 'python2-variant'. [native-inputs]: Add python2-enum34. Leo Famulari
2017-08-02gnu: calibre: Add python2-msgpack as an input....* gnu/packages/ebook.scm (calibre)[inputs]: Add python2-msgpack. Manolis Ragkousis
2017-08-02gnu: gcc@4.7: Don't built on aarch64....* gnu/packages/gcc.scm (gcc@4.7, gcc@4.8, gcc@4.9)[supported-systems]: New field. Efraim Flashner
2017-08-02gnu: libpng-apng: Be sure to apply the APNG patch....* gnu/packages/image.scm (libpng-apng)[arguments]: Check the return status of the patching procedures. Leo Famulari
2017-08-02gnu: libpng-apng: Update to 1.6.28....Fixes <https://bugs.gnu.org/27556>. * gnu/packages/image.scm (libpng-apng): Update to 1.6.28. Remove inherit of 'libpng'. [version]: Use own version, remove 'package-version libpng'. [source]: Don't inherit the source of libpng. [arguments]: Update hash of libpng-apng source. Signed-off-by: Leo Famulari <leo@famulari.name> ng0
2017-08-02gnu: eyed3: Update to 0.8, build with python3....* gnu/packages/mp3.scm (eyed3): [source] Update to 0.8. [arguments]: Disable tests; don't use python-2. [propagated-inputs]: Add python-six and python-grako. [native-inputs]: Remove. Thomas Danckaert
2017-08-02gnu: Add python-grako...* gnu/packages/python.scm (python-grako): New variable. Thomas Danckaert
2017-08-02gnu: hdf4: Update to 4.12.13....* gnu/packages/maths.scm (hdf4): Update to 4.12.13. Thomas Danckaert
2017-08-02gnu: libvirt: Update to 3.6.0....* gnu/packages/virtualization.scm (libvirt): Update to 3.6.0. Tobias Geerinckx-Rice
2017-08-02gnu: libvirt: Use HTTPS....* gnu/packages/virtualization.scm (libvirt)[source, home-page]: Use HTTPS. Tobias Geerinckx-Rice
2017-08-02gnu: Add r-rlang....* gnu/packages/statistics.scm (r-rlang): New variable. Roel Janssen
2017-08-02gnu: r-deseq2: Update to 1.16.1....* gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.16.1. Roel Janssen
2017-08-02gnu: r-annotationforge: Update to 1.18.1....* gnu/packages/bioinformatics.scm (r-annotationforge): Update to 1.18.1. Roel Janssen
2017-08-02gnu: r-category: Update to 2.42.1....* gnu/packages/bioinformatics.scm (r-category): Update to 2.42.1. Roel Janssen
2017-08-02gnu: r-biocstyle: Update to 2.4.1....* gnu/packages/bioinformatics.scm (r-biocstyle): Update to 2.4.1. Roel Janssen
2017-08-02gnu: r-dnacopy: Update to 1.50.1....* gnu/packages/bioinformatics.scm (r-dnacopy): Update to 1.50.1. Roel Janssen
2017-08-02gnu: r-iranges: Update to 2.10.2....* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.10.2. Roel Janssen
2017-08-02gnu: r-genomeinfodb: Update to 1.12.2....* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.12.2. Roel Janssen
2017-08-02gnu: r-variantannotation: Update to 1.22.3....* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.22.3. Roel Janssen
2017-08-02gnu: r-limma: Update to 3.32.5....* gnu/packages/bioinformatics.scm (r-limma): Update to 3.32.5. Roel Janssen
2017-08-02gnu: r-biobase: Update to 2.36.2....* gnu/packages/bioinformatics.scm (r-biobase): Update to 2.36.2. Roel Janssen
2017-08-02gnu: r-annotationdbi: Update to 1.38.2....* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.38.2. Roel Janssen
2017-08-02gnu: r-biomart: Update to 2.32.1....* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.32.1. Roel Janssen
2017-08-02gnu: r-biocparallel: Update to 1.10.1....* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.10.1. Roel Janssen
2017-08-02gnu: r-biostrings: Update to 2.44.2....* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.44.2. Roel Janssen
2017-08-02gnu: r-delayedarray: Update to 0.2.7....* gnu/packages/bioinformatics.scm (r-delayedarray): Update to 0.2.7. Roel Janssen
2017-08-02gnu: r-summarizedexperiment: Update to 1.6.3....* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.6.3. Roel Janssen
2017-08-02gnu: r-genomicalignments: Update to 1.12.1....* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.12.1. Roel Janssen
2017-08-02gnu: r-rtracklayer: Update to 1.36.4....* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.36.4. Roel Janssen
2017-08-02gnu: r-genomicfeatures: Update to 1.28.4....* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.28.4. Roel Janssen
2017-08-02gnu: r-copywriter: Update to 2.8.1....* gnu/packages/bioinformatics.scm (r-copywriter): Update to 2.8.1. Roel Janssen
2017-08-02gnu: r-sva: Update to 3.24.4....* gnu/packages/bioinformatics.scm (r-sva): Update to 3.24.4. Roel Janssen
2017-08-02gnu: r-rsqlite: Update to 2.0....* gnu/packages/statistics.scm (r-rsqlite): Update to 2.0. Roel Janssen
2017-08-02gnu: Add r-blob....* gnu/packages/statistics.scm (r-blob): New variable. Roel Janssen
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