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2021-03-15gnu: r-variantannotation: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-variantannotation): Move from here... * gnu/packages/bioconductor.scm (r-variantannotation): ...to here.
2021-03-15gnu: r-edger: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-edger): Move from here... * gnu/packages/bioconductor.scm (r-edger): ...to here.
2021-03-15gnu: r-genomeinfodb: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Move from here... * gnu/packages/bioconductor.scm (r-genomeinfodb): ...to here.
2021-03-15gnu: r-genomeinfodbdata: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-genomeinfodbdata): Move from here... * gnu/packages/bioconductor.scm (r-genomeinfodbdata): ...to here. [source]: Use 'bioconductor-uri'.
2021-03-15gnu: r-iranges: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-iranges): Move from here... * gnu/packages/bioconductor.scm (r-iranges): ...to here.
2021-03-15gnu: r-s4vectors: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-s4vectors): Move from here... * gnu/packages/bioconductor.scm (r-s4vectors): ...to here.
2021-03-15gnu: r-bioccheck: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-bioccheck): Move from here... * gnu/packages/bioconductor.scm (r-bioccheck): ...to here.
2021-03-15gnu: r-grohmm: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-grohmm): Move from here... * gnu/packages/bioconductor.scm (r-grohmm): ...to here.
2021-03-15gnu: r-biocstyle: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-biocstyle): Move from here... * gnu/packages/bioconductor.scm (r-biocstyle): ...to here.
2021-03-15gnu: r-biocviews: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-biocviews): Move from here... * gnu/packages/bioconductor.scm (r-biocviews): ...to here.
2021-03-15gnu: r-rsqlite: Update to 2.2.4.Ricardo Wurmus
* gnu/packages/statistics.scm (r-rsqlite): Update to 2.2.4.
2021-03-15gnu: r-rcpparmadillo: Update to 0.10.2.2.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.10.2.2.0.
2021-03-15gnu: r-formatr: Update to 1.8.Ricardo Wurmus
* gnu/packages/statistics.scm (r-formatr): Update to 1.8. [native-inputs]: Add r-knitr.
2021-03-15gnu: r-survival: Update to 3.2-9.Ricardo Wurmus
* gnu/packages/statistics.scm (r-survival): Update to 3.2-9.
2021-03-15gnu: r-textshaping: Update to 0.3.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-textshaping): Update to 0.3.2.
2021-03-15gnu: r-mlr3tuning: Update to 0.8.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-mlr3tuning): Update to 0.8.0.
2021-03-15gnu: r-bbotk: Update to 0.3.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-bbotk): Update to 0.3.1.
2021-03-15gnu: r-workflows: Update to 0.2.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-workflows): Update to 0.2.2. [propagated-inputs]: Add r-vctrs.
2021-03-15gnu: r-spatstat: Update to 2.0-1.Ricardo Wurmus
* gnu/packages/cran.scm (r-spatstat): Update to 2.0-1. [propagated-inputs]: Remove r-abind, r-deldir, r-goftest, r-matrix, r-mgcv, r-nlme, r-polyclip, r-rpart, and r-tensor; add r-spatstat-core, r-spatstat-geom, and r-spatstat-linnet.
2021-03-15gnu: r-brms: Update to 2.15.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-brms): Update to 2.15.0.
2021-03-15gnu: r-forecast: Update to 8.14.Ricardo Wurmus
* gnu/packages/cran.scm (r-forecast): Update to 8.14.
2021-03-15gnu: r-lavaan: Update to 0.6-8.Ricardo Wurmus
* gnu/packages/cran.scm (r-lavaan): Update to 0.6-8.
2021-03-15gnu: r-parallelly: Update to 1.24.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-parallelly): Update to 1.24.0.
2021-03-15gnu: r-effectsize: Update to 0.4.4.Ricardo Wurmus
* gnu/packages/cran.scm (r-effectsize): Update to 0.4.4.
2021-03-15gnu: r-magick: Update to 2.7.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-magick): Update to 2.7.0.
2021-03-15gnu: r-blockfest: Update to 2.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-blockfest): Update to 2.0.
2021-03-15gnu: r-flextable: Update to 0.6.4.Ricardo Wurmus
* gnu/packages/cran.scm (r-flextable): Update to 0.6.4.
2021-03-15gnu: r-maptools: Update to 1.1-1.Ricardo Wurmus
* gnu/packages/cran.scm (r-maptools): Update to 1.1-1.
2021-03-15gnu: r-utf8: Update to 1.2.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-utf8): Update to 1.2.1. [native-inputs]: Add r-knitr.
2021-03-15gnu: r-xfun: Update to 0.22.Ricardo Wurmus
* gnu/packages/cran.scm (r-xfun): Update to 0.22.
2021-03-15gnu: r-ipred: Update to 0.9-11.Ricardo Wurmus
* gnu/packages/cran.scm (r-ipred): Update to 0.9-11.
2021-03-15gnu: r-lava: Update to 1.6.9.Ricardo Wurmus
* gnu/packages/cran.scm (r-lava): Update to 1.6.9.
2021-03-15gnu: r-rvest: Update to 1.0.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-rvest): Update to 1.0.0. [propagated-inputs]: Add r-lifecycle, r-rlang, and r-tibble.
2021-03-15gnu: r-zoo: Update to 1.8-9.Ricardo Wurmus
* gnu/packages/cran.scm (r-zoo): Update to 1.8-9.
2021-03-15gnu: Add r-spatstat-linnet.Ricardo Wurmus
* gnu/packages/cran.scm (r-spatstat-linnet): New variable.
2021-03-15gnu: Add r-spatstat-core.Ricardo Wurmus
* gnu/packages/cran.scm (r-spatstat-core): New variable.
2021-03-15gnu: Add r-spatstat-geom.Ricardo Wurmus
* gnu/packages/cran.scm (r-spatstat-geom): New variable.
2021-03-15gnu: Add r-spatstat-sparse.Ricardo Wurmus
* gnu/packages/cran.scm (r-spatstat-sparse): New variable.
2021-03-15gnu: python-sphobjinv: Fix build.Léo Le Bouter
* gnu/packages/sphinx.scm (python-sphobjinv): [patches]: Remove. [propagated-inputs]: Add (uncomment) python-certifi.
2021-03-15gnu: libcroco/fixed: Make private.Léo Le Bouter
* gnu/packages/gnome.scm (libcroco/fixed): Use define instead of define-public.
2021-03-15gnu: cyrus-sasl/fixed: Make private.Léo Le Bouter
* gnu/packages/cyrus-sasl.scm (cyrus-sasl/fixed): Use define instead of define-public.
2021-03-15gnu: unzip/fixed: Make private.Léo Le Bouter
* gnu/packages/compression.scm (unzip/fixed): Use define instead of define-public.
2021-03-15gnu: poetry: Update to 1.1.5.Tanguy Le Carrour
* gnu/packages/python-xyz.scm (poetry): Update to 1.1.5. Signed-off-by: Christopher Baines <mail@cbaines.net>
2021-03-15gnu: python-poetry-core: Update to 1.0.2.Tanguy Le Carrour
* gnu/packages/python-build.scm (python-poetry-core): Update to 1.0.2. Signed-off-by: Christopher Baines <mail@cbaines.net>
2021-03-15gnu: r-gkmsvm: Move back to (gnu packages cran).Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-gkmsvm): Move this variable from here... * gnu/packages/cran.scm (r-gkmsvm): ...to here.
2021-03-15gnu: libusb-for-axoloti: Revert to 1.0.23.Ricardo Wurmus
* gnu/packages/axoloti.scm (libusb-for-axoloti): Revert to 1.0.23, because the patch does not apply to the latest version.
2021-03-15gnu: guile-opengl: Fix linking with libGL.so.Ricardo Wurmus
* gnu/packages/gl.scm (guile-opengl)[arguments]: Fix reference to libGL.so.
2021-03-15gnu: Add instrain.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (instrain): New variable.
2021-03-15gnu: Add python-drep.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-drep): New variable.
2021-03-15gnu: Add python-lmfit.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-lmfit): New variable.
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