| Age | Commit message (Expand) | Author |
|---|
| 2018-06-14 | gnu: pigx-bsseq: Update to 0.0.9....* gnu/packages/bioinformatics.scm (pigx-bsseq): Update to 0.0.9.
| Ricardo Wurmus |
| 2018-06-14 | Remove 'guix-register' and its traces....* Makefile.am (SH_TESTS): Remove tests/guix-register.sh.
* build-aux/pre-inst-env.in (GUIX_REGISTER): Remove.
* gnu/build/install.scm (directives): Remove outdated comment.
* gnu/build/vm.scm (root-partition-initializer): Update comment.
* gnu/packages/package-management.scm (guix-register): Remove.
* guix/config.scm.in (%sbindir, %guix-register-program): Remove.
* guix/scripts/system.scm (install): Adjust docstring.
* guix/self.scm (make-config.scm): Remove #:guix. Do not generate
%sbindir and %guix-register-program.
(specification->package): Remove "guix".
* nix/guix-register/guix-register.cc: Remove.
* nix/libstore/store-api.cc (decodeValidPathInfo): Remove.
* nix/libstore/store-api.hh (decodeValidPathInfo): Remove declaration.
* nix/local.mk (sbin_PROGRAMS, guix_register_SOURCES)
(guix_register_CPPFLAGS, guix_register_LDFLAGS): Remove.
* tests/guix-register.sh: Remove.
| Ludovic Courtès |
| 2018-06-14 | database: Allow for deterministic database construction....Fixes <https://bugs.gnu.org/21073>.
* guix/store/database.scm (sqlite-register): Add #:time.
(%epoch): New variable.
(register-items): Add #:registration-time. Pass #:time to
'sqlite-register'.
* gnu/build/install.scm (register-closure): Pass #:registration-time.
| Ludovic Courtès |
| 2018-06-14 | install: Use 'reset-timestamps' from (guix store database)....* gnu/build/install.scm (reset-timestamps): Remove.
* gnu/build/vm.scm: Use 'reset-timestamps' from (guix store database).
| Ludovic Courtès |
| 2018-06-14 | database: Add 'register-items'....* guix/build/store-copy.scm (store-info): Export.
* guix/store/database.scm (register-items): New procedure.
(register-path): Implement in terms of 'register-items'.
* gnu/build/install.scm (register-closure): Use 'register-items' instead
of 'for-each' and 'register-path'.
| Ludovic Courtès |
| 2018-06-14 | install: Use (guix store database) instead of 'guix-register'....* gnu/build/install.scm (register-closure): Add #:reset-timestamps? and
and #:schema; honor them. Rewrite in terms of 'register-path'.
(populate-single-profile-directory): Add #:schema and honor it. Make
/var/guix/profiles and /var/guix/gcroots.
* gnu/build/vm.scm (root-partition-initializer): Pass
#:reset-timestamps? to 'register-closure'.
* gnu/system/vm.scm (not-config?): New procedure.
(guile-sqlite3&co): New variable.
(expression->derivation-in-linux-vm)[config]: New variable.
[builder]: Use 'with-extensions'.
(iso9660-image)[schema, config]: New variables.
Wrap build expression in 'with-extensions'; add 'sql-schema' call.
Remove GUIX from INPUTS.
(qemu-image)[schema, config]: New variables.
Wrap body in 'with-extensions'.
(system-docker-image)[not-config?]: Remove.
[config]: Use 'make-config.scm'.
[schema]: New variable.
[build]: Use 'with-extensions'. Add call to 'sql-schema'. Remove GUIX
from INPUTS.
* gnu/system/file-systems.scm (%store-prefix): Check whether
'%store-prefix' is defined.
* guix/scripts/pack.scm (self-contained-tarball)[not-config?]
[libgcrypt, schema]: New variables.
[build]: Wrap in 'with-extensions'. Adjust imported module list to use
'make-config.scm' for (guix config).
| Ludovic Courtès |
| 2018-06-14 | vm: 'expression->derivation-in-linux-vm' code can now use dlopen....* gnu/system/vm.scm (expression->derivation-in-linux-vm)
[user-builder]: Define in non-monadic style as 'program-file'.
[loader]: Likewise, and 'execl' USER-BUILDER instead of loading it.
(system-docker-image): Pass BUILD as the second
argument to 'expression->derivation-in-linux-vm'.
(make-iso9660-image, qemu-image): Remove call to 'reboot'.
| Ludovic Courtès |
| 2018-06-14 | build: Require Guile-SQLite3....The next commits make (sqlite3) an indirect dependency of (gnu build
install), which is itself used by (guix scripts system), hence this new
requirement.
* configure.ac: Error out when $guix_cv_have_recent_guile_sqlite3 is
false. Remove HAVE_GUILE_SQLITE3 Automake conditional.
* Makefile.am (MODULES, SCM_TESTS): Remove HAVE_GUILE_SQLITE3 conditions.
* doc/guix.texi (Requirements): Add Guile-SQLite3.
* README: Ditto.
* gnu/packages/package-management.scm (guix)[propagated-inputs]: Add
GUILE-SQLITE3.
[arguments]: In 'wrap-program' phase, take guile-sqlite3 into account.
| Ludovic Courtès |
| 2018-06-14 | store-copy: 'read-reference-graph' returns a list of records....The previous implementation of 'read-reference-graph' was good enough
for many use cases, but it discarded the graph structure, which is
useful information in some cases.
* guix/build/store-copy.scm (<store-info>): New record type.
(read-reference-graph): Rewrite to return a list of <store-info>.
(closure-size, populate-store): Adjust accordingly.
* gnu/services/base.scm (references-file): Adjust accordingly.
* gnu/system/vm.scm (system-docker-image): Likewise.
* guix/scripts/pack.scm (squashfs-image, docker-image): Likewise.
* tests/gexp.scm ("gexp->derivation #:references-graphs"): Likewise.
| Ludovic Courtès |
| 2018-06-14 | gnu: libgcrypt: Fix CVE-2018-0495....* gnu/packages/gnupg.scm (libgcrypt)[replacement]: New field.
(libgcrypt/fixed): New package.
| Efraim Flashner |
| 2018-06-14 | gnu: Add python-dns-lexicon....* gnu/packages/python.scm (python-dns-lexicon, python2-dns-lexicon): New
variables.
| Clément Lassieur |
| 2018-06-14 | gnu: Add python-pynamecheap....* gnu/packages/python.scm (python-pynamecheap, python2-pynamecheap): New
variables.
| Clément Lassieur |
| 2018-06-14 | gnu: Add python-tldextract....* gnu/packages/python.scm (python-tldextract, python2-tldextract): New
variables.
| Clément Lassieur |
| 2018-06-14 | gnu: Add python-requests-file....* gnu/packages/python.scm (python-requests-file, python2-requests-file): New
variables.
| Clément Lassieur |
| 2018-06-14 | gnu: Add tmate....* gnu/packages/terminals.scm (tmate): New variable.
| Arun Isaac |
| 2018-06-14 | services: tor: Mark end of auto-generated configuration block....* gnu/services/networking.scm (tor-configuration->torrc): Clearly
demarcate auto-generated lines.
| Tobias Geerinckx-Rice |
| 2018-06-14 | Fix typo in (gnu packages gtk) header....* gnu/packages/gtk.scm: Fix ‘Coypright’ typo.
| Tobias Geerinckx-Rice |
| 2018-06-14 | gnu: python-gnupg: Return #t from phase....* gnu/packages/gnupg.scm (python-gnupg)[arguments]: Substitute INVOKE
for SYSTEM*.
| Tobias Geerinckx-Rice |
| 2018-06-14 | gnu: python-gnupg: Update to 0.4.3....* gnu/packages/gnupg.scm (python-gnupg): Update to 0.4.3.
[arguments]: Remove obsolete substitution.
| Tobias Geerinckx-Rice |
| 2018-06-14 | gnu: sssd: Update to 1.16.2....* gnu/packages/sssd.scm (sssd): Update to 1.16.2.
[native-inputs]: Add libxml2.
| Tobias Geerinckx-Rice |
| 2018-06-13 | gnu: pigx-scrnaseq: Update to 0.0.5....* gnu/packages/bioinformatics.scm (pigx-scrnaseq): Update to 0.0.5.
[inputs]: Add python-magic.
| Ricardo Wurmus |
| 2018-06-13 | gnu: emacs-orgalist: Update to 1.8....* gnu/packages/emacs.scm (emacs-orgalist): Update to 1.8.
| Nicolas Goaziou |
| 2018-06-13 | gnu: emacspeak: Update to 48.0....* gnu/packages/emacs.scm (emacspeak): Update to 48.0.
[arguments]: Use 'invoke'. In the 'install' phase, add additional
installation directories and fix the launch script substitution.
[inputs]: Add emacs and perl.
[native-inputs]: Remove emacs-minimal.
| Kei Kebreau |
| 2018-06-13 | gnu: r-factoextra: Fix syntax error....* gnu/packages/cran.scm (r-factoextra)[description]: Fix syntax error.
| Ricardo Wurmus |
| 2018-06-13 | gnu: r-seurat: Update to 2.3.2....* gnu/packages/bioinformatics.scm (r-seurat): Update to 2.3.2.
[propagated-inputs]: Add r-hdf5r.
| Ricardo Wurmus |
| 2018-06-13 | gnu: r-s4vectors: Update to 0.18.3....* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.18.3.
| Ricardo Wurmus |
| 2018-06-13 | gnu: r-biocviews: Update to 1.48.1....* gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.48.1.
| Ricardo Wurmus |
| 2018-06-13 | gnu: r-rjson: Update to 0.2.20....* gnu/packages/web.scm (r-rjson): Update to 0.2.20.
| Ricardo Wurmus |
| 2018-06-13 | gnu: r-zoo: Update to 1.8-2....* gnu/packages/statistics.scm (r-zoo): Update to 1.8-2.
| Ricardo Wurmus |
| 2018-06-13 | gnu: r-rmarkdown: Update to 1.10....* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.10.
[propagated-inputs]: Add r-tinytex.
| Ricardo Wurmus |
| 2018-06-13 | gnu: r-highr: Update to 0.7....* gnu/packages/statistics.scm (r-highr): Update to 0.7.
| Ricardo Wurmus |
| 2018-06-13 | gnu: r-stringi: Update to 1.2.3....* gnu/packages/statistics.scm (r-stringi): Update to 1.2.3.
| Ricardo Wurmus |
| 2018-06-13 | gnu: r-munsell: Update to 0.5.0....* gnu/packages/statistics.scm (r-munsell): Update to 0.5.0.
| Ricardo Wurmus |
| 2018-06-13 | gnu: r-rgooglemaps: Update to 1.4.2....* gnu/packages/geo.scm (r-rgooglemaps): Update to 1.4.2.
| Ricardo Wurmus |
| 2018-06-13 | gnu: r-reticulate: Update to 1.8....* gnu/packages/cran.scm (r-reticulate): Update to 1.8.
| Ricardo Wurmus |
| 2018-06-13 | gnu: r-later: Update to 0.7.3....* gnu/packages/cran.scm (r-later): Update to 0.7.3.
| Ricardo Wurmus |
| 2018-06-13 | gnu: r-radiant-data: Update to 0.9.5....* gnu/packages/cran.scm (r-radiant-data): Update to 0.9.5.
[propagated-inputs]: Remove r-plyr; add r-glue, r-plotly, r-readxl, r-rlang,
and r-writexl.
| Ricardo Wurmus |
| 2018-06-13 | gnu: r-cubature: Update to 1.3-13....* gnu/packages/cran.scm (r-cubature): Update to 1.3-13.
| Ricardo Wurmus |
| 2018-06-13 | gnu: r-extradistr: Update to 1.8.9....* gnu/packages/cran.scm (r-extradistr): Update to 1.8.9.
| Ricardo Wurmus |
| 2018-06-13 | gnu: r-statnet-common: Update to 4.1.2....* gnu/packages/cran.scm (r-statnet-common): Update to 4.1.2.
[propagated-inputs]: Add r-coda.
| Ricardo Wurmus |
| 2018-06-13 | gnu: r-stringdist: Update to 0.9.5.1....* gnu/packages/cran.scm (r-stringdist): Update to 0.9.5.1.
| Ricardo Wurmus |
| 2018-06-13 | gnu: r-rcpproll: Update to 0.3.0....* gnu/packages/cran.scm (r-rcpproll): Update to 0.3.0.
| Ricardo Wurmus |
| 2018-06-13 | gnu: r-extremes: Update to 2.0-9....* gnu/packages/cran.scm (r-extremes): Update to 2.0-9.
| Ricardo Wurmus |
| 2018-06-13 | gnu: r-sp: Update to 1.3-1....* gnu/packages/cran.scm (r-sp): Update to 1.3-1.
| Ricardo Wurmus |
| 2018-06-13 | gnu: r-getoptlong: Update to 0.1.7....* gnu/packages/cran.scm (r-getoptlong): Update to 0.1.7.
| Ricardo Wurmus |
| 2018-06-13 | gnu: r-circlize: Update to 0.4.4....* gnu/packages/cran.scm (r-circlize): Update to 0.4.4.
| Ricardo Wurmus |
| 2018-06-13 | gnu: r-globaloptions: Update to 0.1.0....* gnu/packages/cran.scm (r-globaloptions): Update to 0.1.0.
| Ricardo Wurmus |
| 2018-06-13 | gnu: Add r-writexl....* gnu/packages/cran.scm (r-writexl): New variable.
| Ricardo Wurmus |
| 2018-06-13 | gnu: Add r-hdf5r....* gnu/packages/cran.scm (r-hdf5r): New variable.
| Ricardo Wurmus |
| 2018-06-13 | gnu: Add r-nbclust....* gnu/packages/cran.scm (r-nbclust): New variable.
| Ricardo Wurmus |
