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2019-08-29gnu: mesa: Update to 19.1.5.Rutger Helling
* gnu/packages/gl.scm (mesa): Update to 19.1.5.
2019-08-29gnu: wayland-protocols: Update to 1.18.Rutger Helling
* gnu/packages/freedesktop.scm (wayland-protocols): Update to 1.18.
2019-08-29gnu: libvdpau: Update to 1.3.Rutger Helling
* gnu/packages/video.scm (libvdpau): Update to 1.3. [source]: Switch to git-fetch. [build-system]: Switch to meson-build-system.
2019-08-29gnu: qt: Update to 5.12.4.Efraim Flashner
* gnu/packages/qt.scm (qt, qtbase, qtsvg, qtimageformats, qtx11extras, qtxmlpatterns, qtdeclarative, qtconnectivity, qtwebsockets, qtsensors, qtmultimedia, qtwayland, qtserialport, qtserialbus, qtwebchannel, qtwebglplugin, qtwebview, qtlocation, qttools, qtscript, qtquickcontrols, qtquickcontrols2, qtgraphicaleffects, qtgamepad, qtscxml, qtpurchasing, qtcanvas3d, qtcharts, qtdatavis3d, qtnetworkauth, qtremoteobjects, qtspeech): Update to 5.12.4. (qt, qtbase)[source]: Remove xkbcommon from list of directories to remove. (qtbase)[source]: Remove upstreamed patch. (python-sip): Update to 4.19.18. [source]: Update to new source uri. (python-pyqt): Update to 5.12.3. [source]: Update to new source uri. * gnu/packages/patches/qtbase-old-kernel.patch: Remove patch. * gnu/local.mk (dist_patch_DATA): Remove it.
2019-08-15gnu: libinput: Update to 1.14.0.Rutger Helling
* gnu/packages/freedesktop.scm (libinput): Update to 1.14.0.
2019-08-15gnu: mesa: Remove unnecessary inputs.Rutger Helling
* gnu/packages/gl.scm (mesa)[native-inputs]: Remove unnecessary inputs.
2019-08-15gnu: vulkan-headers: Update to 1.1.119.Rutger Helling
* gnu/packages/vulkan.scm (vulkan-headers): Update to 1.1.119. [arguments]: Remove unnecessary phases. * gnu/packages/vulkan.scm (vulkan-loader): Update hash. * gnu/packages/vulkan.scm (vulkan-tools): Update hash.
2019-08-14gnu: rust: Fix building.Efraim Flashner
This is a follow-up to e07b04882a621f0e78ec9cc81071722529530290. * gnu/packages/rust.scm (rust@1.19, rust@1.32)[arguments]: When using functions from (guix build cargo-utils), make sure to include said module in that build phase.
2019-08-12gnu: rust: Use 'generate-all-checksums'.Efraim Flashner
* gnu/packages/rust.scm (rust@1.19)[arguments]: During custom 'patch-cargo-checksums phase, replace call to 'generate-checksums' with call to 'generate-all-checksums'. (rust@1.32)[arguments]: Same.
2019-08-12gnu: gnuzilla: Use 'generate-all-checksums'.Efraim Flashner
* gnu/packages/gnuzilla.scm (icecat)[arguments]: During custom 'patch-cargo-checksums phase, replace call to 'generate-checksums' with call to 'generate-all-checksums'.
2019-08-11Revert "gnu: python-packaging: Update to 19.1."Marius Bakke
The new version fails tests on architectures other than x86_64. This reverts commit cb16a9fba9f1b28bde63daaa1bf241c130d2caad.
2019-08-08Merge branch 'master' into stagingMarius Bakke
2019-08-08gnu: ruby-pg: Update to 1.1.4.Marius Bakke
* gnu/packages/ruby.scm (ruby-pg): Update to 1.1.4. [inputs]: Change from POSTGRESQL-9.6 to POSTGRESQL.
2019-08-08gnu: exempi: Update home page.Marius Bakke
* gnu/packages/freedesktop.scm (exempi)[home-page]: Update to current.
2019-08-08gnu: postgresql@9: Update to 9.6.15 [fixes CVE-2019-10208].Marius Bakke
* gnu/packages/databases.scm (postgresql-9.6): Update to 9.6.15.
2019-08-08gnu: postgresql@11: Update to 11.5 [fixes CVE-2019-10208, CVE-2019-10209].Marius Bakke
* gnu/packages/databases.scm (postgresql-11): Update to 11.5.
2019-08-08gnu: exempi: Update to 2.5.1.Marius Bakke
* gnu/packages/freedesktop.scm (exempi): Update to 2.5.1.
2019-08-08gnu: LibRaw: Update to 0.19.4.Marius Bakke
* gnu/packages/photo.scm (libraw): Update to 0.19.4.
2019-08-08gnu: postgresql: Udpate to 10.10 [fixes CVE-2019-10208].Marius Bakke
* gnu/packages/databases.scm (postgresql): Update to 10.10.
2019-08-08gnu: r-modelr: Update to 0.1.5.Ricardo Wurmus
* gnu/packages/cran.scm (r-modelr): Update to 0.1.5. [propagated-inputs]: Remove r-lazyeval; add r-rlang.
2019-08-08gnu: r-quantreg: Update to 5.51.Ricardo Wurmus
* gnu/packages/statistics.scm (r-quantreg): Update to 5.51.
2019-08-08gnu: r-knitr: Update to 1.24.Ricardo Wurmus
* gnu/packages/statistics.scm (r-knitr): Update to 1.24.
2019-08-08gnu: r-markdown: Update to 1.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-markdown): Update to 1.1. [propagated-inputs]: Add r-xfun.
2019-08-08gnu: r-ggsignif: Update to 0.6.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggsignif): Update to 0.6.0.
2019-08-08gnu: r-hdf5array: Update to 1.12.2.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-hdf5array): Update to 1.12.2.
2019-08-08gnu: r-biocparallel: Update to 1.18.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.18.1.
2019-08-08gnu: ToME4: Disable parallel build.Marius Bakke
* gnu/packages/games.scm (tome4)[arguments]: Add <#:parallel-build?>.
2019-08-08Revert "gnu: Add vcflib."Efraim Flashner
This reverts commit 194e45f90addf5f9bd3e7e2de1dd50b3071f053b. This commit does not have a good commit message, and it breaks master
2019-08-08Revert "gnu: Add freebayes."Efraim Flashner
This reverts commit 173e046950e153477a6aaa0f4860d8f080df6843.
2019-08-08gnu: Add freebayes.Pierre Neidhardt
* gnu/packages/bioinformatics.scm (freebayes): New variable.
2019-08-08gnu: Add vcflib.Pierre Neidhardt
* gnu/packages/bioinformatics.scm (vcflib): New variable.
2019-08-08gnu: Add fastahack.Pierre Neidhardt
* gnu/packages/bioinformatics.scm (fastahack): New variable.
2019-08-08gnu: Add fsom.Pierre Neidhardt
* gnu/packages/bioinformatics.scm (fsom): New variable.
2019-08-08gnu: Add multichoose.Pierre Neidhardt
* gnu/packages/bioinformatics.scm (multichoose): New variable.
2019-08-08gnu: Add smithwaterman.Pierre Neidhardt
* gnu/packages/bioinformatics.scm (smithwaterman): New variable.
2019-08-08gnu: Add tabixpp.Pierre Neidhardt
* gnu/packages/bioinformatics.scm (tabixpp): New variable.
2019-08-08gnu: Add network-manager-openconnect.Efraim Flashner
* gnu/packages/gnome.scm (network-manager-openconnect): New variable.
2019-08-07gnu: ghc-trifecta: Disable tests.Robert Vollmert
* gnu/packages/haskell.scm (ghc-trifecta)[arguments]: Disable tests.
2019-08-07gnu: ghc-yaml: Disable tests.Robert Vollmert
* gnu/packages/haskell.scm (ghc-yaml)[arguments]: Disable tests.
2019-08-07gnu: ghc-libmpd-haskell: Disable tests.Robert Vollmert
* gnu/packages/haskell.scm (ghc-libmpd-haskell)[arguments]: Disable tests.
2019-08-07gnu: Remove ghc-packedstring.Robert Vollmert
The package has no reverse dependencies and is deprecated upstream. * gnu/packages/haskell.scm (ghc-packedstring): Remove variable.
2019-08-07gnu: Remove ghc-haddock-test.Robert Vollmert
The package doesn't build, has no reverse dependencies, and is deprecated upstream. * gnu/packages/haskell.scm (ghc-haddock-test): Remove variable.
2019-08-07gnu: Remove ghc-regex-tdfa-rc.Robert Vollmert
The package doesn't build, has no reverse dependencies, and is deprecated upstream. * gnu/packages/haskell.scm (ghc-regex-tdfa-rc): Remove variable.
2019-08-07gnu: Add ghc-snap-server.Robert Vollmert
* gnu/packages/haskell-web.scm (ghc-snap-server): New variable.
2019-08-07gnu: Add ghc-snap-core.Robert Vollmert
* gnu/packages/haskell-web.scm (ghc-snap-core): New variable.
2019-08-07gnu: Add ghc-http-streams.Robert Vollmert
* gnu/packages/haskell-web.scm (ghc-http-streams): New variable.
2019-08-07gnu: Add ghc-http-common.Robert Vollmert
* gnu/packages/haskell-web.scm (ghc-http-common): New variable.
2019-08-07gnu: Add ghc-openssl-streams.Robert Vollmert
* gnu/packages/haskell-crypto.scm (ghc-openssl-streams): New variable.
2019-08-07gnu: Add ghc-hsopenssl.Robert Vollmert
* gnu/packages/haskell-crypto.scm (ghc-hsopenssl): New variable.
2019-08-07gnu: Add ghc-io-streams-haproxy.Robert Vollmert
* gnu/packages/haskell-xyz.scm (ghc-io-streams-haproxy): New variable.
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