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2018-10-05gnu: Add ngless....* gnu/packages/bioinformatics.scm (ngless): New variable. Ricardo Wurmus
2018-10-05gnu: Add ghc-safeio....* gnu/packages/haskell.scm (ghc-safeio): New variable. Ricardo Wurmus
2018-10-05gnu: Add ghc-file-embed....* gnu/packages/haskell.scm (ghc-file-embed): New variable. Ricardo Wurmus
2018-10-05gnu: Add ghc-configurator....* gnu/packages/haskell.scm (ghc-configurator): New variable. Ricardo Wurmus
2018-10-05gnu: Add ghc-bytestring-lexing....* gnu/packages/haskell.scm (ghc-bytestring-lexing): New variable. Ricardo Wurmus
2018-10-05gnu: Add ghc-inline-c-cpp....* gnu/packages/haskell.scm (ghc-inline-c-cpp): New variable. Ricardo Wurmus
2018-10-05gnu: Add ghc-safe-exceptions....* gnu/packages/haskell.scm (ghc-safe-exceptions): New variable. Ricardo Wurmus
2018-10-05gnu: Add ghc-inline-c....* gnu/packages/haskell.scm (ghc-inline-c): New variable. Ricardo Wurmus
2018-10-05gnu: Add ghc-raw-string-qq....* gnu/packages/haskell.scm (ghc-raw-string-qq): New variable. Ricardo Wurmus
2018-10-05gnu: Add ghc-hpack....* gnu/packages/haskell.scm (ghc-hpack): New variable. Ricardo Wurmus
2018-10-05gnu: Add ghc-interpolate....* gnu/packages/haskell.scm (ghc-interpolate): New variable. Ricardo Wurmus
2018-10-05gnu: Add ghc-conduit-algorithms....* gnu/packages/haskell.scm (ghc-conduit-algorithms): New variable. Ricardo Wurmus
2018-10-05gnu: Add ghc-pqueue....* gnu/packages/haskell.scm (ghc-pqueue): New variable. Ricardo Wurmus
2018-10-05gnu: Add ghc-bzlib-conduit....* gnu/packages/haskell.scm (ghc-bzlib-conduit): New variable. Ricardo Wurmus
2018-10-05gnu: Add ghc-lzma-conduit....* gnu/packages/haskell.scm (ghc-lzma-conduit): New variable. Ricardo Wurmus
2018-10-05gnu: Add ghc-bindings-dsl....* gnu/packages/haskell.scm (ghc-bindings-dsl): New variable. Ricardo Wurmus
2018-10-05gnu: Add ghc-stm-conduit....* gnu/packages/haskell.scm (ghc-stm-conduit): New variable. Ricardo Wurmus
2018-10-05gnu: Add ghc-lzma....* gnu/packages/haskell.scm (ghc-lzma): New variable. Ricardo Wurmus
2018-10-05gnu: Add ghc-cereal-conduit....* gnu/packages/haskell.scm (ghc-cereal-conduit): New variable. Ricardo Wurmus
2018-10-05gnu: Add ghc-atomic-write....* gnu/packages/haskell.scm (ghc-atomic-write): New variable. Ricardo Wurmus
2018-10-05gnu: Add ghc-chart-cairo....* gnu/packages/haskell.scm (ghc-chart-cairo): New variable. Ricardo Wurmus
2018-10-05gnu: Add ghc-cairo....* gnu/packages/haskell.scm (ghc-cairo): New variable. Ricardo Wurmus
2018-10-05gnu: ghc-regex: Fix build....* gnu/packages/haskell.scm (ghc-regex)[arguments]: Add build phase to relax version checks. Ricardo Wurmus
2018-10-05gnu: ghc-http-conduit: Remove ghc-http-client from native-inputs....* gnu/packages/haskell-web.scm (ghc-http-conduit)[native-inputs]: Remove ghc-http-client. Ricardo Wurmus
2018-10-05gnu: ruby-sass: Update to 3.6.0....* gnu/packages/ruby.scm (ruby-sass)[version]: Update to 3.6.0. [source]: Update sha256. [native-inputs]: Add ruby-mathn, as this is needed when using Ruby 2.5. Christopher Baines
2018-10-05gnu: Add ruby-mathn....* gnu/packages/ruby.scm (ruby-mathn): New variable. Christopher Baines
2018-10-05gnu: ruby-sass-spec: Fix spec expectation....This fixes building ruby-sass with Ruby 2.5. * gnu/packages/ruby.scm (ruby-sass-spec)[arguments]: Add patch-test phase to fix the expectation of one of the tests. Also change the comment regarding the tests not being run. Christopher Baines
2018-10-05gnu: ruby-term-ansicolor: Fix test for Ruby 2.5....* gnu/packages/ruby.scm (ruby-term-ansicolor)[arguments]: Add new fix-test phase to fix a test that fails under Ruby 2.5. Christopher Baines
2018-10-05gnu: ruby-shindo: Remove -rubygems flags....These have been removed in Ruby 2.5. * gnu/packages/ruby.scm (ruby-shindo)[arguments]: Change fix-tests phase to also remove the -rubygems flags. Christopher Baines
2018-10-05gnu: bioruby: Update to 1.5.2....This works with Ruby 2.5. * gnu/packages/bioinformatics.scm (bioruby): Update to 1.5.2. Christopher Baines
2018-10-05gnu: gnucash-docs: Update to 3.3....The documentation on SourceForge is now located in the same directory as the source code. * gnu/packages/gnucash.scm (gnucash-docs): Update to 3.3. Kei Kebreau
2018-10-05gnu: gnucash: Update to 3.3....* gnu/packages/patches/gnucash-disable-failing-tests.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/gnucash.scm (gnucash): Update to 3.3. [source]: Add patch. [arguments]: Add 'set-env-vars', 'glib-or-gtk-compile-schemas', and 'glib-or-gtk-wrap' phases. Kei Kebreau
2018-10-05gnu: Add bastet....* gnu/packages/games.scm (bastet): New public variable. * gnu/packages/patches/bastet-change-source-of-unordered_set.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Tobias Geerinckx-Rice
2018-10-05gnu: fdroidserver: Update to 1.0.10....* gnu/packages/android.scm (fdroidserver): Update to 1.0.10. Tobias Geerinckx-Rice
2018-10-05gnu: audacity: Don't use unstable tarball....* gnu/packages/audio.scm (audacity)[source]: Use GIT-FETCH and GIT-FILE-NAME. Tobias Geerinckx-Rice
2018-10-05gnu: filezilla: Update to 3.37.4....* gnu/packages/ftp.scm (filezilla): Update to 3.37.4. Tobias Geerinckx-Rice
2018-10-05gnu: libfilezilla: Update to 0.14.0....* gnu/packages/ftp.scm (libfilezilla): Update to 0.14.0. Tobias Geerinckx-Rice
2018-10-05gnu: samtools-0.1: Adjust to match changes in samtools....* gnu/packages/bioinformatics.scm (samtools-0.1)[arguments]: Override make flags. Ricardo Wurmus
2018-10-05gnu: deeptools: Update to 3.1.2....* gnu/packages/bioinformatics.scm (deeptools): Update to 3.1.2. [source]: Fetch from git. [arguments]: Delete reset-gzip-timestamps phase. [inputs]: Add python-plotly. Ricardo Wurmus
2018-10-05gnu: python-pysam: Update to 0.15.1....* gnu/packages/bioinformatics.scm (python-pysam): Update to 0.15.1. [source]: Fetch from git. [arguments]: Delete tests requiring internet access; use "invoke". [inputs]: Add curl. Ricardo Wurmus
2018-10-05gnu: python-plotly: Add python-pandas to inputs....* gnu/packages/graph.scm (python-plotly)[propagated-inputs]: Add python-pandas. Ricardo Wurmus
2018-10-05gnu: bcftools: Update to 1.9....* gnu/packages/bioinformatics.scm (bcftools): Update to 1.9. [arguments]: Remove obsolete make flags. Ricardo Wurmus
2018-10-05gnu: samtools: Update to 1.9....* gnu/packages/bioinformatics.scm (samtools): Update to 1.9. [origin]: Remove bundled htslib sources. [arguments]: Remove obsolete make-flags. Ricardo Wurmus
2018-10-05gnu: htslib: Update to 1.9....* gnu/packages/bioinformatics.scm (htslib): Update to 1.9. Ricardo Wurmus
2018-10-04gnu: icecat: Add fixes from mozilla-esr60 [security fixes]....Includes fixes for CVE-2018-12386 and CVE-2018-12387. * gnu/packages/gnuzilla.scm (icecat)[source]: Add selected fixes from the upstream mozilla-esr60 repository. Mark H Weaver
2018-10-04gnu: linux-libre: Update to 4.18.12....* gnu/packages/linux.scm (%linux-libre-version): Update to 4.18.12. (%linux-libre-hash): Update hash. Mark H Weaver
2018-10-04gnu: linux-libre@4.14: Update to 4.14.74....* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.74. (%linux-libre-4.14-hash): Update hash. Mark H Weaver
2018-10-04gnu: linux-libre@4.9: Update to 4.9.131....* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.131. Mark H Weaver
2018-10-04gnu: petsc-openmpi: Configure with support for MUMPS solver....* gnu/packages/maths.scm (petsc-openmpi)[inputs]: Add metis, mumps-openmpi, scalapack and pt-scotch. [arguments]: Add "--with-PACKAGENAME=1" flags. Move 'mpi-setup' phase ahead of 'configure' phase. Signed-off-by: Leo Famulari <leo@famulari.name> Paul Garlick
2018-10-04gnu: hiawatha: Set sane run-time directory defaults....* gnu/packages/web.scm (hiawatha)[arguments]: Set sane default directories. Replace the 'remove-empty-dirs' phase with a 'install-no-empty-directories' one. Tobias Geerinckx-Rice
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