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2019-09-15gnu: Add r-seqbias.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-seqbias): New variable.
2019-09-15gnu: Add r-affycoretools.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-affycoretools): New variable.
2019-09-15gnu: Add r-oligoclasses.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-oligoclasses): New variable.
2019-09-15gnu: Add r-reportingtools.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-reportingtools): New variable.
2019-09-15gnu: Add r-pfam-db.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-pfam-db): New variable.
2019-09-15gnu: Add r-affycontam.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-affycontam): New variable.
2019-09-15gnu: Add r-affycompatible.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-affycompatible): New variable.
2019-09-15gnu: Add r-affycomp.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-affycomp): New variable.
2019-09-15gnu: Add r-affydata.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-affydata): New variable.
2019-09-15gnu: Add r-timeseriesexperiment.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-timeseriesexperiment): New variable.
2019-09-15gnu: Add r-wavcluster.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-wavcluster): New variable.
2019-09-15gnu: r-spam: Update to 2.3-0.Ricardo Wurmus
* gnu/packages/cran.scm (r-spam): Update to 2.3-0.
2019-09-15gnu: r-feather: Update to 0.3.5.Ricardo Wurmus
* gnu/packages/cran.scm (r-feather): Update to 0.3.5.
2019-09-15gnu: emacs-zerodark-theme: Update to 4.6.Giacomo Leidi
* gnu/packages/emacs-xyz.scm (emacs-zerodark-theme): Update to 4.6. [source]: Update to new source uri.
2019-09-15gnu: Add yubico-pam.Ricardo Wurmus
* gnu/packages/authentication.scm (yubico-pam): New variable.
2019-09-14gnu: r-delayedmatrixstats: Update to 1.6.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-delayedmatrixstats): Update to 1.6.1.
2019-09-14gnu: r-rhdf5lib: Update to 1.6.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-rhdf5lib): Update to 1.6.1.
2019-09-14gnu: r-rtracklayer: Update to 1.44.4.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.44.4.
2019-09-14gnu: r-genomicranges: Update to 1.36.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.36.1.
2019-09-14gnu: r-s4vectors: Update to 0.22.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.22.1.
2019-09-14gnu: r-mixomics: Update to 6.8.4.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.8.4.
2019-09-14gnu: r-gtrellis: Update to 1.16.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-gtrellis): Update to 1.16.1.
2019-09-14gnu: r-regioner: Update to 1.16.4.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.16.4.
2019-09-14gnu: Add emacs-elixir-mode.Björn Höfling
* gnu/packages/emacs-xyz.scm (emacs-elixir-mode): New variable.
2019-09-14gnu: wine-staging: Update to 4.16.Rutger Helling
* gnu/packages/wine.scm (wine-staging-patchset-data): Update to 4.16. * gnu/packages/wine.scm (wine-staging): Update to 4.16.
2019-09-14gnu: r-tidyr: Update to 1.0.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-tidyr): Update to 1.0.0. [propagated-inputs]: Add r-ellipsis, r-lifecycle, and r-vctrs.
2019-09-14gnu: r-diffusionmap: Update to 1.2.0.Ricardo Wurmus
* gnu/packages/graph.scm (r-diffusionmap): Update to 1.2.0.
2019-09-14gnu: r-seqinr: Update to 3.6-1.Ricardo Wurmus
* gnu/packages/cran.scm (r-seqinr): Update to 3.6-1.
2019-09-14gnu: Add r-lifecycle.Ricardo Wurmus
* gnu/packages/cran.scm (r-lifecycle): New variable.
2019-09-14gnu: r-huge: Update to 1.3.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-huge): Update to 1.3.3.
2019-09-14gnu: r-tidytree: Update to 0.2.7.Ricardo Wurmus
* gnu/packages/cran.scm (r-tidytree): Update to 0.2.7.
2019-09-14gnu: r-activity: Update to 1.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-activity): Update to 1.3. [propagated-inputs]: Add r-insol.
2019-09-14gnu: r-sjplot: Update to 2.7.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-sjplot): Update to 2.7.1.
2019-09-14gnu: r-sjstats: Update to 0.17.6.Ricardo Wurmus
* gnu/packages/cran.scm (r-sjstats): Update to 0.17.6. [propagated-inputs]: Add r-parameters.
2019-09-14gnu: r-emmeans: Update to 1.4.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-emmeans): Update to 1.4.1.
2019-09-14gnu: r-sjlabelled: Update to 1.1.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-sjlabelled): Update to 1.1.1.
2019-09-14gnu: r-circlize: Update to 0.4.8.Ricardo Wurmus
* gnu/packages/cran.scm (r-circlize): Update to 0.4.8.
2019-09-14gnu: r-httpuv: Update to 1.5.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-httpuv): Update to 1.5.2.
2019-09-14gnu: Add r-insol.Ricardo Wurmus
* gnu/packages/cran.scm (r-insol): New variable.
2019-09-14gnu: Add r-rgdal.Ricardo Wurmus
* gnu/packages/cran.scm (r-rgdal): New variable.
2019-09-14gnu: Add r-parameters.Ricardo Wurmus
* gnu/packages/cran.scm (r-parameters): New variable.
2019-09-13gnu: gnujump: Add desktop file.Efraim Flashner
This fixes bug#37069. * gnu/packages/games.scm (gnujump)[arguments]: Add custom 'create-desktop-entry phase to install a desktop file.
2019-09-13gnu: tipp10: Fix path in desktop entry.Efraim Flashner
* gnu/packages/patches/tipp10-fix-compiling.patch: Remove changes to hardcode executable path.
2019-09-13gnu: gmsh: Update home page.Paul Garlick
This addresses a 'guix lint' warning. * gnu/packages/maths.scm (gmsh)[home-page]: Update to avoid URL redirection.
2019-09-13gnu: mcron: Update to 1.1.2.Efraim Flashner
* gnu/packages/guile-xyz.scm (mcron): Update to 1.1.2. [arguments]: Remove custom 'set-timezone phase. [native-inputs]: Add autoconf, automake, help2man, texinfo. [inputs]: Remove ed, which.
2019-09-13gnu: shellutils.scm: Sort module inputs.Efraim Flashner
* gnu/packages/shellutils.scm: Sort module inputs alphabetically.
2019-09-13gnu: Add zsh-autosuggestions.Collin J. Doering
* gnu/packages/shellutils.scm (zsh-autosuggestions): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2019-09-13gnu: Add ruby-rspec-wait.Collin J. Doering
* gnu/packages/ruby.scm (ruby-rspec-wait): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2019-09-13gnu: Add sh-z shell toolCollin J. Doering
* gnu/packages/shellutils.scm (sh-z): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-09-13gnu: Thunar: Update to 1.8.9.L p R n d n
* gnu/packages/xfce.scm (thunar): Update to 1.8.9. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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