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2020-02-27gnu: vcftools: Update to 0.1.16....* gnu/packages/bioinformatics.scm (vcftools): Update to 0.1.16. Ricardo Wurmus
2020-02-27gnu: git-annex: Update to 8.20200226....* gnu/packages/haskell-apps.scm (git-annex): Update to 8.20200226. Signed-off-by: Jakub Kądziołka <kuba@kadziolka.net> Kyle Meyer
2020-02-27gnu: bedtools: Update to 2.29.2....* gnu/packages/bioinformatics.scm (bedtools): Update to 2.29.2. [native-inputs]: Replace python-2 with python-wrapper. [license]: Change to Expat. Ricardo Wurmus
2020-02-27gnu: rseqc: Update to 3.0.1....* gnu/packages/bioinformatics.scm (rseqc): Update to 3.0.1. [source]: Remove snippet. [arguments]: Remove to build with Python 3. [inputs]: Replace python2-cython, python2-pysam, and python2-numpy with python-cython, python-pysam, and python-numpy, respectively; add python-bx-python and python-pybigwig. [native-inputs]: Replace python2-nose with python-nose. Ricardo Wurmus
2020-02-27gnu: earlyoom: Update to latest commit to resolve a test failure....* gnu/packages/linux.scm (earlyoom): Update to commit 7bd4b2c9a285d2b9a4ef6e7a080e83ab95fcdeea. Maxim Cournoyer
2020-02-27gnu: git-repo: Really disable self update....* gnu/packages/android.scm (git-repo)[phases]{do-not-self-update}: Rename phase from 'do-not-clone-this-source. Rework the patching done to prevent repo from self updating. {set-executable-paths}: Do not patch the reference to GnuPG, as it is only necessary for the self update mechanism, which is disabled. [inputs]: Remove gnupg. Maxim Cournoyer
2020-02-27gnu: git-repo: Update to 2.4.1....* gnu/packages/android.scm (git-repo): Update to 2.4.1. Maxim Cournoyer
2020-02-27gnu: kicad: Add translations and search paths....* gnu/packages/engineering.scm (kicad)[arguments]<#:phases>[install-translations]: New phase. [native-search-paths]: Add specification for KICAD_TEMPLATE_DIR, KICAD_SYMBOL_DIR, KISYSMOD and KISYS3DMOD. [native-inputs]: Add desktop-file-utils and kicad-i18l. [inputs]: Remove desktop-file-utils. Replace python by python-wrapper. (kicad-i18l): New variable. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> Brice Waegeneire
2020-02-27gnu: kicad-symbols: Update synopsis and description....* gnu/packages/engineering.scm (kicad-symbols)[synopsis]: Update. [description]: Update. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> Brice Waegeneire
2020-02-27gnu: Remove kicad-library....* gnu/packages/engineering.scm (kicad-library): Remove variable. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> Brice Waegeneire
2020-02-27gnu: Add kicad-templates....* gnu/packages/engineering.scm (kicad-templates): New variable. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> Brice Waegeneire
2020-02-27gnu: Add kicad-packages3d....* gnu/packages/engineering.scm (kicad-packages3d): New variable. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> Brice Waegeneire
2020-02-27gnu: Add kicad-footprints....* gnu/packages/engineering.scm (kicad-footprints): New variable. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> Brice Waegeneire
2020-02-27gnu: Add lttng-ust....* gnu/packages/linux.scm (lttng-ust): New variable. Pierre Neidhardt
2020-02-27gnu: gnome-shell-extension-noannoyance: Fix synopsis and description....* gnu/packages/gnome-xyz.scm (gnome-shell-extension-noannoyance)[synopsis]: Use imperative form. [description]: Remove spurious comma. Pierre Neidhardt
2020-02-27gnu: gnome-shell-extension-noannoyance: Use the copy-build-system....* gnu/packages/gnome-xyz.scm (gnome-shell-extension-noannoyance): Use the copy-build-system. Leo Prikler
2020-02-27gnu: gnome-shell-extension-appindicator: Use the copy-build-system....* gnu/packages/gnome-xyz.scm (gnome-shell-extension-appindicator): Use the copy-build-system. Leo Prikler
2020-02-27gnu: Add gnome-shell-extension-gsconnect....* gnu/packages/gnome-xyz.scm (gnome-shell-extension-gsconnect): New variable. Alex Griffin
2020-02-27gnu: emacs-evil-collection: Update to 20200219....* gnu/packages/emacs-xyz.scm (emacs-evil-collection): Update to 20200219. Pierre Neidhardt
2020-02-27gnu: Add emacs-password-generator....* gnu/packages/emacs-xyz.scm (emacs-password-generator): New variable. Arun Isaac
2020-02-27gnu: Add emacs-exiftool....* gnu/packages/emacs-xyz.scm (emacs-exiftool): New variable. Arun Isaac
2020-02-26gnu: opensbi-qemu-sifive-u: Mark as deprecated....* gnu/packages/firmware (opensbi-qemu-sifive-u): Deprecated by opensbi-sifive-fu540. Vagrant Cascadian
2020-02-26gnu: opensbi: Update to 0.6....* gnu/packages/firmware (make-opensbi-package): Update to 0.6. Vagrant Cascadian
2020-02-26gnu: python-construct: Update to 2.10.56....* gnu/packages/python-xyz (python-construct): Update to 2.10.56. Vagrant Cascadian
2020-02-26gnu: u-boot-pinebook: Fix LCD video output....* gnu/packages/bootloaders (u-boot-pinebook): Add phase applying patch submitted upstream. Vagrant Cascadian
2020-02-26gnu: Add emacs-org-superstar....* gnu/packages/emacs-xyz.scm (emacs-org-superstar): New variable. Nicolas Goaziou
2020-02-26gnu: icecat: Remove about:buildconfig store references....* gnu/packages/gnuzilla.scm (icecat)[arguments]: New ‘neutralise-store-references’ phase. Co-authored-by: Tobias Geerinckx-Rice <me@tobias.gr> Jakub Kądziołka
2020-02-26gnu: awscli: Update to 1.18.6....* gnu/packages/python-web.scm (awscli): Update to 1.18.6. Signed-off-by: Marius Bakke <mbakke@fastmail.com> Evan Straw
2020-02-26gnu: vim-full: Describe differences from vim....* gnu/packages/vim.scm (vim-full)[description]: New field. Explain what vim-full provides over vim. Signed-off-by: Marius Bakke <mbakke@fastmail.com> Jack Hill
2020-02-26gnu: musl: Update to 1.2.0....* gnu/packages/musl (musl): Update to 1.2.0. Signed-off-by: Marius Bakke <mbakke@fastmail.com> Vincent Legoll
2020-02-26gnu: benchmark: Add bonnie++....* gnu/packages/benchmark.scm (bonnie++): New variable. Signed-off-by: Marius Bakke <mbakke@fastmail.com> Vincent Legoll
2020-02-26gnu: emacs-eacl: Fix typo in description....* gnu/packages/emacs-xyz.scm (emacs-eacl)[description]: Correct misspelling of "commands". Signed-off-by: Marius Bakke <mbakke@fastmail.com> Kyle Meyer
2020-02-26gnu: emacs-elixir-mode: Fix capitalization in description....* gnu/packages/emacs-xyz.scm (emacs-elixir-mode)[description]: Downcase incorrectly capitalized word. Signed-off-by: Marius Bakke <mbakke@fastmail.com> Kyle Meyer
2020-02-26gnu: clang: Move version conditionals out of the builder....* gnu/packages/llvm.scm (clang-from-llvm)[arguments]: Rewrite phase 'set-glibc-file-names' to use VERSION>=? from (guix utils) and splice in the relevant build code, instead of doing the comparison at build time. Marius Bakke
2020-02-26gnu: clang: Fix C++ search path handling on non-x86_64....* gnu/packages/llvm.scm (clang-from-llvm)[arguments]: Add phase 'add-missing-triplets'. Marius Bakke
2020-02-26gnu: node: Disable failing tests on armhf-linux....* gnu/packages/node.scm (node)[arguments]: When building on armhf-linux, disable several zlib tests. Marius Bakke
2020-02-26gnu: node: Update to 10.19.0....* gnu/packages/node.scm (node): Update to 10.19.0. [inputs]: Remove LIBUV and NGHTTP2:LIB. Add LIBUV/LATEST and NGHTTP2-1.40:LIB. Marius Bakke
2020-02-26gnu: nghttp2: Add version 1.40.0....* gnu/packages/web.scm (nghttp2-1.40): New public variable. Marius Bakke
2020-02-26gnu: LibUV: Add version 1.34.2....* gnu/packages/libevent.scm (libuv/latest): New public variable. Marius Bakke
2020-02-26gnu: pocl: Build with LLVM@9....* gnu/packages/opencl.scm (pocl)[inputs]: Change from LLVM-8 to LLVM. Marius Bakke
2020-02-26gnu: Add emacs-company-emoji....[[PGP Signed Part:No public key for F530C3B4A2A9F06D created at 2020-02-23T04:48:54+0100 using RSA]] From 6c23c5966a3c7ed01c784874e410d5fe3009bfc5 Mon Sep 17 00:00:00 2001 From: Evan Straw <evan.straw99@gmail.com> Date: Sat, 22 Feb 2020 19:47:19 -0800 Subject: [PATCH] gnu: Add emacs-company-emoji. * gnu/packages/emacs-xyz.scm (emacs-company-emoji): New variable. Evan Straw
2020-02-26gnu: proteinortho: Update to 6.0.14....* gnu/packages/bioinformatics.scm (proteinortho): Update to 6.0.14. [source]: Fetch from git; remove pre-built scripts. [arguments]: Set make-flags; update wrap-programs phase to wrap all scripts. [inputs]: Add guile-3.0, diamond, python-wrapper, lapack, and openblas; remove python-2. [native-inputs]: Add which. [license]: Update to GPLv3+ Ricardo Wurmus
2020-02-26gnu: diamond: Update to 0.9.30....* gnu/packages/bioinformatics.scm (diamond): Update to 0.9.30. Ricardo Wurmus
2020-02-26gnu: crossmap: Update to 0.3.8....* gnu/packages/bioinformatics.scm (crossmap): Update to 0.3.8. [arguments]: Remove to build with default Python. [inputs]: Add python-pybigwig; replace python2-bx-python, python2-numpy, and python2-pysam with their Python 3 variants. [native-inputs]: Replace python2-cython and python2-nose with their Python 3 variants. Ricardo Wurmus
2020-02-26gnu: Add rust-libressl-pnacl-sys-2....* gnu/packages/crates-io.scm (rust-libressl-pnacl-sys-2): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Valentin Ignatev
2020-02-26gnu: Add rust-pnacl-build-helper-1.4....* gnu/packages/crates-io.scm (rust-pnacl-build-helper-1.4): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Valentin Ignatev
2020-02-26gnu: Add rust-zip-0.5....* gnu/packages/crates-io.scm (rust-zip-0.5): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Valentin Ignatev
2020-02-26gnu: Add rust-bzip2-0.3....* gnu/packages/crates-io.scm (rust-bzip2-0.3): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Valentin Ignatev
2020-02-26gnu: Add rust-partial-io-0.2....* gnu/packages/crates-io.scm (rust-partial-io-0.2): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Valentin Ignatev
2020-02-26gnu: Add rust-winpty-sys-0.4....* gnu/packages/crates-io.scm (rust-winpty-sys-0.4): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Valentin Ignatev