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2022-07-03gnu: nim: Update to 1.6.6....* gnu/packages/nim.scm (nim): Updated to 1.6.6. Signed-off-by: Christopher Baines <mail@cbaines.net> Trevor Richards
2022-07-03gnu: propeller-binutils: Remove source patches....None of the patches seem to apply. The patches that are not used with binutils are probably too new for the specific commit used here, and the patches that were once applied have probably been removed, so just don't apply any patches. * gnu/packages/embedded.scm (propeller-binutils)[source]: Remove patches that don't apply. Christopher Baines
2022-07-03gnu: java-xpp3: Download source from ci.guix.gnu.org....The www.extreme.indiana.edu site is now serving a redirect: This site has been deprecated. You can access an archive of this site at https://web.archive.org/web/20210225153105/https://www.extreme.indiana.edu/. Because this isn't a 404, as it probably should be, guix follows this redirect and gets some content that isn't the file it asked for. To avoid this incorrect behaviour, switch to using a ci.guix.gnu.org URL for the file instead. * gnu/packages/xml.scm (java-xpp3)[source]: Switch the uri to ci.guix.gnu.org. Christopher Baines
2022-07-03gnu: curl: Skip failing test on 32-bit architectures....* gnu/packages/curl.scm (curl-7.84.0)[arguments]: Use custom 'skip-failing-tests phase on all 32-bit architectures. Efraim Flashner
2022-07-03gnu: curl: Fix build on some systems....* gnu/packages/curl.scm (curl-7.84.0)[source]: Add patch to work around implicit function declaration. * gnu/packages/patches/curl-easy-lock.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. Efraim Flashner
2022-07-03gnu: Add sqls 0.2.18....* gnu/packages/databases (sqls): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> muradm
2022-07-03gnu: Add go-github-com-sourcegraph-jsonrpc2 0.1.0....* gnu/packages/golang.scm (go-github-com-sourcegraph-jsonrpc2): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> muradm
2022-07-03gnu: Add go-github-com-gorilla-websocket 1.5.0....* gnu/packages/golang.scm (go-github-com-gorilla-websocket): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> muradm
2022-07-02gnu: r-ifultools: Patch in removed macros to fix build....* gnu/packages/cran.scm (r-ifultools)[arguments]: Define removed compatibility macros. Ricardo Wurmus
2022-07-02gnu: r-with-tests: Update to 4.2.1....* gnu/packages/statistics.scm (r-with-tests): Update to 4.2.1. Ricardo Wurmus
2022-07-02gnu: r-tcgabiolinks: Update to 2.24.3....* gnu/packages/bioconductor.scm (r-tcgabiolinks): Update to 2.24.3. Ricardo Wurmus
2022-07-02gnu: r-bionetstat: Update to 1.16.1....* gnu/packages/bioconductor.scm (r-bionetstat): Update to 1.16.1. Ricardo Wurmus
2022-07-02gnu: r-bgeedb: Update to 2.22.3....* gnu/packages/bioconductor.scm (r-bgeedb): Update to 2.22.3. Ricardo Wurmus
2022-07-02gnu: r-ggbio: Update to 1.44.1....* gnu/packages/bioconductor.scm (r-ggbio): Update to 1.44.1. Ricardo Wurmus
2022-07-02gnu: r-rsubread: Update to 2.10.4....* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.10.4. Ricardo Wurmus
2022-07-02gnu: r-biosigner: Update to 1.24.2....* gnu/packages/bioconductor.scm (r-biosigner): Update to 1.24.2. [propagated-inputs]: Add r-multiassayexperiment and r-summarizedexperiment. Ricardo Wurmus
2022-07-02gnu: r-ropls: Update to 1.28.2....* gnu/packages/bioconductor.scm (r-ropls): Update to 1.28.2. [propagated-inputs]: Add r-multiassayexperiment and r-summarizedexperiment. Ricardo Wurmus
2022-07-02gnu: r-genomicscores: Update to 2.8.2....* gnu/packages/bioconductor.scm (r-genomicscores): Update to 2.8.2. [propagated-inputs]: Add r-httr. Ricardo Wurmus
2022-07-02gnu: r-clusterprofiler: Update to 4.4.4....* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.4.4. Ricardo Wurmus
2022-07-02gnu: r-batchelor: Update to 1.12.3....* gnu/packages/bioconductor.scm (r-batchelor): Update to 1.12.3. Ricardo Wurmus
2022-07-02gnu: r-matrixgenerics: Update to 1.8.1....* gnu/packages/bioconductor.scm (r-matrixgenerics): Update to 1.8.1. Ricardo Wurmus
2022-07-02gnu: r-zellkonverter: Update to 1.6.3....* gnu/packages/bioconductor.scm (r-zellkonverter): Update to 1.6.3. Ricardo Wurmus
2022-07-02gnu: r-simplifyenrichment: Update to 1.6.1....* gnu/packages/bioconductor.scm (r-simplifyenrichment): Update to 1.6.1. Ricardo Wurmus
2022-07-02gnu: r-rtracklayer: Update to 1.56.1....* gnu/packages/bioconductor.scm (r-rtracklayer): Update to 1.56.1. Ricardo Wurmus
2022-07-02gnu: r-organismdbi: Update to 1.38.1....* gnu/packages/bioconductor.scm (r-organismdbi): Update to 1.38.1. Ricardo Wurmus
2022-07-02gnu: r-limma: Update to 3.52.2....* gnu/packages/bioconductor.scm (r-limma): Update to 3.52.2. Ricardo Wurmus
2022-07-02gnu: r-ensembldb: Update to 2.20.2....* gnu/packages/bioconductor.scm (r-ensembldb): Update to 2.20.2. Ricardo Wurmus
2022-07-02gnu: r-gld: Update to 2.6.5....* gnu/packages/statistics.scm (r-gld): Update to 2.6.5. Ricardo Wurmus
2022-07-02gnu: r-clubsandwich: Update to 0.5.7....* gnu/packages/statistics.scm (r-clubsandwich): Update to 0.5.7. Ricardo Wurmus
2022-07-02gnu: r-ranger: Update to 0.14.1....* gnu/packages/statistics.scm (r-ranger): Update to 0.14.1. Ricardo Wurmus
2022-07-02gnu: r-car: Update to 3.1-0....* gnu/packages/statistics.scm (r-car): Update to 3.1-0. Ricardo Wurmus
2022-07-02gnu: r-gtools: Update to 3.9.2.2....* gnu/packages/statistics.scm (r-gtools): Update to 3.9.2.2. Ricardo Wurmus
2022-07-02gnu: r-r-rsp: Update to 0.45.0....* gnu/packages/statistics.scm (r-r-rsp): Update to 0.45.0. Ricardo Wurmus
2022-07-02gnu: r-r-utils: Update to 2.12.0....* gnu/packages/statistics.scm (r-r-utils): Update to 2.12.0. Ricardo Wurmus
2022-07-02gnu: r-r-methodss3: Update to 1.8.2....* gnu/packages/statistics.scm (r-r-methodss3): Update to 1.8.2. Ricardo Wurmus
2022-07-02gnu: r-rcpparmadillo: Update to 0.11.2.0.0....* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.11.2.0.0. Ricardo Wurmus
2022-07-02gnu: r-dbplyr: Update to 2.2.1....* gnu/packages/statistics.scm (r-dbplyr): Update to 2.2.1. Ricardo Wurmus
2022-07-02gnu: r-rlang: Update to 1.0.3....* gnu/packages/statistics.scm (r-rlang): Update to 1.0.3. Ricardo Wurmus
2022-07-02gnu: r-dbi: Update to 1.1.3....* gnu/packages/statistics.scm (r-dbi): Update to 1.1.3. Ricardo Wurmus
2022-07-02gnu: r-nlme: Update to 3.1-158....* gnu/packages/statistics.scm (r-nlme): Update to 3.1-158. Ricardo Wurmus
2022-07-02gnu: r-spacetime: Update to 1.2-8....* gnu/packages/cran.scm (r-spacetime): Update to 1.2-8. [native-inputs]: Add r-knitr. Ricardo Wurmus
2022-07-02gnu: r-pkgdown: Update to 2.0.5....* gnu/packages/cran.scm (r-pkgdown): Update to 2.0.5. Ricardo Wurmus
2022-07-02gnu: r-downlit: Update to 0.4.1....* gnu/packages/cran.scm (r-downlit): Update to 0.4.1. [propagated-inputs]: Add r-withr. Ricardo Wurmus
2022-07-02gnu: r-clustree: Update to 0.5.0....* gnu/packages/cran.scm (r-clustree): Update to 0.5.0. Ricardo Wurmus
2022-07-02gnu: r-phangorn: Update to 2.9.0....* gnu/packages/cran.scm (r-phangorn): Update to 2.9.0. [propagated-inputs]: Add r-generics. Ricardo Wurmus
2022-07-02gnu: r-parsnip: Update to 1.0.0....* gnu/packages/cran.scm (r-parsnip): Update to 1.0.0. [propagated-inputs]: Add r-pillar. Ricardo Wurmus
2022-07-02gnu: r-tidyposterior: Update to 1.0.0....* gnu/packages/cran.scm (r-tidyposterior): Update to 1.0.0. Ricardo Wurmus
2022-07-02gnu: r-dials: Update to 1.0.0....* gnu/packages/cran.scm (r-dials): Update to 1.0.0. [propagated-inputs]: Add r-pillar. Ricardo Wurmus
2022-07-02gnu: r-rsample: Update to 1.0.0....* gnu/packages/cran.scm (r-rsample): Update to 1.0.0. [propagated-inputs]: Remove r-lifecycle; add r-glue and r-pillar. Ricardo Wurmus
2022-07-02gnu: r-lobstr: Update to 1.1.2....* gnu/packages/cran.scm (r-lobstr): Update to 1.1.2. [propagated-inputs]: Remove r-rcpp; add r-cpp11 and r-prettyunits. Ricardo Wurmus
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