Age | Commit message (Collapse) | Author |
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* gnu/packages/cran.scm (r-sys): Update to 3.1.
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* gnu/packages/bioinformatics.scm (r-diversitree)[propagated-inputs]: Fix typo
in package labels.
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* gnu/packages/cran.scm (r-insight): New variable.
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Fixes <https://bugs.gnu.org/33882>.
* gnu/packages/graphics.scm (blender-2.79): New variable.
(blender)[description]: Remove obsolete claim that the stable
release no longer works in Guix.
* gnu/packages/patches/blender-2.79-newer-ffmpeg.patch,
gnu/packages/patches/blender-2.79-python-3.7-fix.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
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* gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.14.5.
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* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.34.6.
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* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.28.13.
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* gnu/packages/bioinformatics.scm (r-category): Update to 2.48.1.
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* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.28.3.
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* gnu/packages/bioconductor.scm (r-annotate): Update to 1.60.1.
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Fixes <https://bugs.gnu.org/34922>.
* gnu/packages/guile-wm.scm (guile-wm)[arguments]: Rename "set-go-directory"
phase to "set-module-directory"; change "set-load-path" phase to wrap
executable in the correct environment variables; add phase "install-go-files".
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* gnu/packages/video.scm (obs): Update to 23.0.2.
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* gnu/packages/web.scm (perl-plack-middleware-methodoverride): Update to 0.20.
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* gnu/packages/web.scm (perl-uri-template): Update to 0.24.
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* gnu/packages/xorg.scm (mkfontscale): Update to 1.2.0.
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* gnu/packages/xorg.scm (xf86-video-ati): Update to 19.0.1.
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* gnu/packages/xorg.scm (xf86-video-amdgpu): Update to 19.0.1.
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* gnu/packages/animation.scm (pencil2d): Update to 0.6.3.
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* gnu/packages/python-xyz.scm (python-colorspacious)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
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* gnu/packages/linux.scm (%linux-libre-version): Update to 5.0.3.
(%linux-libre-hash): Update hash.
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* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.30.
(%linux-libre-4.19-hash): Update hash.
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* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.107.
(%linux-libre-4.14-hash): Update hash.
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* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.164.
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* gnu/services/authentication.scm (nslcd-service-type, nslcd-configuration,
%nslcd-accounts): New variables.
(uglify-field-name, value->string, serialize-field, serialize-list,
ssl-option?, tls-reqcert-option?, deref-option?,
comma-separated-list-of-strings?, serialize-ignore-users-option, log-option?,
serialize-log-option, valid-map?, scope-option?, serialize-scope-option,
map-entry?, list-of-map-entries?, filter-entry?, list-of-filter-entries?,
serialize-filter-entry, serialize-list-of-filter-entries, serialize-map-entry,
serialize-list-of-map-entries, nslcd-config-file, nslcd-etc-service,
nslcd-shepherd-service, pam-ldap-pam-services, pam-ldap-pam-service,
generate-nslcd-documentation): New procedures.
* gnu/tests/ldap.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* doc/guix.texi (LDAP Services): Document it.
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* gnu/packages/samba.scm (samba): Update to 4.10.0.
[native-inputs]: Replace python-2 with python.
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* gnu/packages/xorg.scm (xpra): Update to 2.5.
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* gnu/packages/linux.scm (iproute): Update to 5.0.0.
[inputs, native-inputs]: Order alphabetically.
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* gnu/packages/openldap.scm (389-ds-base)[arguments]: Pass
"with-instconfigdir"; add phase "overwrite-default-locations" to overwrite
defaults for "initconfig_dir", the certificate location, and the location of
the defaults file.
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* gnu/packages/openldap.scm (389-ds-base)[arguments]: Rename phase
"fix-includes" to "fix-references" and fix references to certutil and
c_rehash.
[inputs]: Add nss:bin.
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* gnu/packages/bioinformatics.scm (adapterremoval): New variable.
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* gnu/packages/openldap.scm (389-ds-base)[arguments]: Set localstatedir to
/var.
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* gnu/packages/openldap.scm (389-ds-base): Update to 1.4.0.21.
[arguments]: Add phase "fix-includes".
[inputs]: Add cracklib.
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* gnu/packages/emacs-xyz.scm (emacs-helm-notmuch): Update to 1.2.
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* gnu/packages/gobby.scm (libinfinity): Update to 0.7.1.
[inputs]: Remove gtk+-2. Add gtk+.
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Includes fixes for CVE-2018-18506, CVE-2019-9788, CVE-2019-9790,
CVE-2019-9791, CVE-2019-9792, CVE-2019-9793, CVE-2019-9794, CVE-2019-9795,
CVE-2019-9796, and CVE-2019-9801.
* gnu/packages/gnuzilla.scm (%icecat-version): Update to 60.6.0-guix1.
(icecat-source)[upstream-firefox-source]: Update hash.
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* gnu/packages/gnuzilla.scm (icecat-source): When packing the new IceCat
tarball, set the mtime of archived files to early 1980. Remove useless
'string-append' applied to one argument.
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* gnu/packages/dns.scm (knot): Update to 2.8.0.
[source]: Add patch.
* gnu/packages/patches/knot-include-system-lmdb-header.patch:
New file.
* gnu/local.mk (dist_patch_DATA): Add it.
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* gnu/packages/games.scm (cataclysm-dda): Update to 0.D.
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* gnu/packages/networking.scm (gandi.cli): Update to 1.4.
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* gnu/packages/networking.scm (python-ipy): Update to 1.00.
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* gnu/packages/compression.scm (google-brotli): Update to 1.0.7.
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* gnu/packages/compression.scm (google-brotli)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
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* gnu/packages/web.scm (perl-catalyst-plugin-session): Update to 0.41.
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* gnu/packages/web.scm (perl-catalyst-action-rest): Update to 1.21.
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* gnu/packages/web.scm (perl-apache-logformat-compiler): Update to 0.35.
[native-inputs]: Replace perl-module-build with
perl-module-build-tiny.
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* gnu/packages/web.scm (geomyidae): Update to 0.34.
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* gnu/packages/web.scm (geomyidae)[home-page]: Point to relevant Web content.
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* gnu/packages/web.scm (geomyidae)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
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* gnu/packages/video.scm (youtube-dl): Update to 2019.03.18.
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* gnu/packages/image-processing.scm (dcmtk)[inputs]: Add libxml2, and openssl.
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