| Age | Commit message (Expand) | Author |
|---|
| 2021-12-04 | gnu: tinmop: Update to 0.9.2....* gnu/packages/web-browsers.scm (tinmop): Update to 0.9.2.
[inputs]: Move nano, openssl and xdg-utils to...
[native-inputs]: ... here. Add automake, autoconf and mandoc. Remove curl
and gnupg.
[arguments]: Add 'fix-configure.ac' phase.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
| cage |
| 2021-12-04 | gnu: pigx-sars-cov2-ww: Update to 0.0.4....* gnu/packages/bioinformatics.scm (pigx-sars-cov2-ww): Update to 0.0.4.
[inputs]: Add bbmap, bedtools, fastp, ivar, and r-r-utils.
| Ricardo Wurmus |
| 2021-12-03 | gnu: imp: Update to 2.15.0....* gnu/packages/bioinformatics.scm (imp): Update to 2.15.0.
[arguments]: Disable one more test.
| Ricardo Wurmus |
| 2021-12-03 | gnu: Add r-fpeek....* gnu/packages/cran.scm (r-fpeek): New variable.
| Ricardo Wurmus |
| 2021-12-03 | gnu: emacs: Load package descriptors from packages referenced by subdirs.el...* gnu/packages/aux-files/emacs/guix-emacs.el
(guix-emacs--non-core-load-path): New procedure.
(guix-emacs-autoload-packages): Use it here.
(guix-emacs-load-package-descriptors): New procedure.
* gnu/packages/emacs.scm (emacs)[install-site-start]: Install advice to run
‘guix-emacs-load-package-descriptors’.
| Liliana Marie Prikler |
| 2021-12-03 | gnu: emacs: Make DocView PDF work out of the box....* gnu/packages/emacs.scm (emacs)[patch-program-file-names]: Add patches for
the programs “gs”, “dvipdf”, “ps2pdf” and “pdftotext”.
[inputs]: Add ghostscript and poppler.
| Liliana Marie Prikler |
| 2021-12-03 | gnu: emacs: Find real GVFS processes....* gnu/packages/emacs.scm (emacs)[#:phases]<patch-program-file-names>: Expand
calls to “tramp-compat-process-running-p” so that Guix wrappers are also
matched.
| Liliana Marie Prikler |
| 2021-12-03 | gnu: Add valeronoi....* gnu/packages/engineering.scm (valeronoi): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
| phodina |
| 2021-12-03 | gnu: st: Install terminfo files....* gnu/packages/suckless.scm (st)[native-inputs]: Add ncurses.
[make-flags](TERMINFO): New flag.
[phases](inhibit-terminfo-install): Remove phase.
Signed-off-by: Raghav Gururajan <rg@raghavgururajan.name>
| jgart |
| 2021-12-03 | gnu: emacs-org: Preserve version information....* gnu/packages/emacs-xyz.scm (emacs-org)[#:phases]: Prevent install phase from
deleting the version information.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
| Morgan Smith |
| 2021-12-03 | gnu: emacs-consult-notmuch: Update to 0.6....* gnu/packages/emacs-xyz.scm (emacs-consult-notmuch): Update to 0.6.
| Nicolas Goaziou |
| 2021-12-03 | gnu: emacs-helm: Update to 3.8.2....* gnu/packages/emacs-xyz.scm (emacs-helm): Update to 3.8.2.
| Nicolas Goaziou |
| 2021-12-03 | gnu: emacs-vertico: Update to 0.17....* gnu/packages/emacs-xyz.scm (emacs-vertico): Update to 0.17.
| Nicolas Goaziou |
| 2021-12-03 | gnu: python-ont-fast5-api: Update to 4.0.0....* gnu/packages/bioinformatics.scm (python-ont-fast5-api): Update to 4.0.0.
[source]: Remove bundled plugin binaries.
[arguments]: Install plugin from inputs.
[inputs]: Add vbz-compression.
[propagated-inputs]: Remove python-six; add python-packaging.
| Ricardo Wurmus |
| 2021-12-03 | gnu: Add vbz-compression....* gnu/packages/bioinformatics.scm (vbz-compression): New variable.
| Ricardo Wurmus |
| 2021-12-03 | system: vm: Remove the vga argument....* gnu/system/vm.scm (common-qemu-options): Remove the "-vga std" argument that
is the default since QEMU 2.2.
Suggested-by: Attila Lendvai <attila@lendvai.name>
| Mathieu Othacehe |
| 2021-12-03 | guix system vm: Add --no-graphic CLI argument....It configures QEMU to use the tty it was started in for IO (as opposed to
opening a separate graphical window). This enables copy-pasting and
scrollback. Exit QEMU with C-a x.
* gnu/system/vm.scm (system-qemu-image/shared-store-script): Also add the
'-nographic' QEMU argument when called with #:graphic? #false.
* guix/scripts/system.scm (system-derivation-for-action): Propagate
the #:graphic? keyword arg.
(perform-action): Add and propagate the #:graphic? keyword arg.
(show-help): Add --no-graphic CLI arg.
(%options): Process the new --no-graphic CLI arg.
(process-action): Feed in the CLI arg through the #:graphic? keyword arg.
* doc/guix.texi (Invoking guix system): Add example to combine guix system and
invoking the vm start script into one command. Split the description of the
various options into separate paragraphs. Add a paragraph to describe
--no-graphic.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
| Attila Lendvai |
| 2021-12-03 | gnu: cl-coalton: Update to 0.0.1-2.012f6c8....* gnu/packages/lisp-xyz.scm (sbcl-coalton): Update to 0.0.1-2.012f6c8.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
| Charles |
| 2021-12-03 | gnu: cl-float-features: Update to 1.0.0-2.c1f86ae....* gnu/packages/lisp-xyz.scm (sbcl-float-features): Update to 1.0.0-2.c1f86ae.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
| Charles |
| 2021-12-03 | gnu: ivar: Disable parallel tests....* gnu/packages/bioinformatics.scm (ivar)[arguments]: Disable parallel tests.
| Ricardo Wurmus |
| 2021-12-03 | gnu: Remove python2-biom-format....There are no users of this variant, and the current version of biom-format
does not support Python 2.
* gnu/packages/bioinformatics.scm (python2-biom-format): Remove variable.
(python-biom-format)[properties]: Remove field.
| Ricardo Wurmus |
| 2021-12-03 | gnu: r-flowclust: Add gsl....* gnu/packages/bioconductor.scm (r-flowclust)[inputs]: Remove accidentally
committed comment character.
| Ricardo Wurmus |
| 2021-12-03 | gnu: icecat: Remove vestigial icecat-78-makeicecat.patch....This is a followup to commit a63231003e7bbeafb0110b077788e47e78685f20.
* gnu/packages/patches/icecat-78-makeicecat.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
| Mark H Weaver |
| 2021-12-03 | gnu: cuirass: Update to 1.1.0-6.df8837c....* gnu/packages/ci.scm (cuirass): Update to 1.1.0-6.df8837c.
| Mathieu Othacehe |
| 2021-12-03 | gnu: python-pandocfilters: Update to 1.5.0....* gnu/packages/textutils.scm (python-pandocfilters): Update to 1.5.0.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
| jgart |
| 2021-12-03 | gnu: icecat: Fix CVE-2021-43527....* gnu/packages/patches/icecat-CVE-2021-43527.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gnuzilla.scm (icecat-source): Apply it.
| Mark H Weaver |
| 2021-12-03 | gnu: nss: Fix CVE-2021-43527 via graft....* gnu/packages/patches/nss-CVE-2021-43527.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/nss.scm (nss/fixed): New variable
(nss)[replacement]: New field.
| Mark H Weaver |
| 2021-12-02 | gnu: openjdk16: Use MAKE-FILE-WRITABLE....* gnu/packages/java.scm (openjdk16)[arguments]: Do not shell out to "chmod".
| Ricardo Wurmus |
| 2021-12-02 | gnu: Add openjdk17....* gnu/packages/java.scm (openjdk17): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
| Arne Babenhauserheide |
| 2021-12-02 | gnu: python2-decorator: Downgrade to 4.3.0...* gnu/packages/python-xyz.scm (python2-decorator): Keep at 4.3.0.
(python-decorator)[properties]: Add python2-variant.
| Ricardo Wurmus |
| 2021-12-02 | gnu: ribodiff: Remove trailing #T....* gnu/packages/bioinformatics.scm (ribodiff)[arguments]: Remove trailing #T
from build phase.
| Ricardo Wurmus |
| 2021-12-02 | gnu: ribodiff: Disable broken test....* gnu/packages/bioinformatics.scm (ribodiff)[arguments]: Add build phase
'disable-plot-test.
| Ricardo Wurmus |
| 2021-12-02 | gnu: python2-statsmodels: Downgrade to 0.9.0....* gnu/packages/statistics.scm (python2-statsmodels): Downgrade to 0.9.0.
| Ricardo Wurmus |
| 2021-12-02 | gnu: khmer: Fix build with Python 3.8....* gnu/packages/bioinformatics.scm (khmer)[source]: Remove trailing #T.
[arguments]: Remove trailing #T from build phases; add build phase
'python-3.8-compatibility.
| Ricardo Wurmus |
| 2021-12-02 | gnu: python-biom-format: Update to 2.1.10....* gnu/packages/bioinformatics.scm (python-biom-format): Update to 2.1.10.
[source]: Simplify snippet.
[arguments]: Add phase 'relax; remove trailing #T from other build phases.
[propagated-inputs]: Add python-anndata; replace python-pandas-0.25 with
python-pandas.
| Ricardo Wurmus |
| 2021-12-02 | gnu: Add trayer-srg....* gnu/packages/wm.scm (trayer-srg): New variable.
Co-authored-by: Disseminate Dissent <disseminatedissent@protonmail.com>
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
| jgart |
| 2021-12-02 | gnu: pardre: Update to 2.2.5....* gnu/packages/bioinformatics.scm (pardre): Update to 2.2.5.
[arguments]: Remove trailing #T and update comment about tests.
| Ricardo Wurmus |
| 2021-12-02 | gnu: pardre: Use C++ bindings for MPI....* gnu/packages/bioinformatics.scm (pardre)[inputs]: Replace openmpi with
openmpi-c++.
| Ricardo Wurmus |
| 2021-12-02 | gnu: Add openmpi-c++....* gnu/packages/mpi.scm (openmpi-c++): New variable.
| Ricardo Wurmus |
| 2021-12-02 | gnu: Add libconfini....* gnu/packages/cpp.scm (libconfini): New variable.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
| Liliana Marie Prikler |
| 2021-12-02 | gnu: shotcut: Update to 21.10.31....* gnu/packages/video.scm (shotcut): Update to 21.10.31.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
| Vinicius Monego |
| 2021-12-02 | gnu: kdenlive: Update to 21.08.3....* gnu/packages/kde.scm (kdenlive): Update to 21.08.3.
[arguments]: Pass "-DBUILD_TESTING=off" to #:configure-flags as tests are
currently disabled.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
| Vinicius Monego |
| 2021-12-02 | gnu: mlt: Update to 7.2.0....* gnu/packages/video.scm (mlt): Update to 7.2.0.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
| Vinicius Monego |
| 2021-12-02 | gnu: ccls: Update to 0.20210330....* gnu/packages/cpp.scm (ccls): Update to 0.20210330.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
| jgart |
| 2021-12-02 | gnu: guile-udev: Update to 0.2.0...* gnu/packages/guile-xyz.scm (guile-udev): Update to 0.2.0.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
| Artyom V. Poptsov |
| 2021-12-02 | gnu: python-ipython: Update to 7.20.0....* gnu/packages/python-xyz.scm (python-ipython): Update to 7.20.0.
| Ricardo Wurmus |
| 2021-12-02 | gnu: python-ipython: Remove trailing #T....* gnu/packages/python-xyz.scm (python-ipython)[arguments]: Remove trailing #T
from build phases.
| Ricardo Wurmus |
| 2021-12-02 | gnu: yggdrasil: Simplify build phases....* gnu/packages/networking.scm (yggdrasil)[arguments]: Rewrite custom
'build phase reusing go-build-system 'build phase. Remove custom
'install phase.
| Efraim Flashner |
| 2021-12-02 | gnu: go-golang-zx2c4-com-wireguard: Fix downloading source....* gnu/packages/golang.scm (go-golang-zx2c4-com-wireguard)[source]:
Adjust commit string in git-reference.
| Efraim Flashner |
| 2021-12-02 | gnu: go-github-com-vividcortex-ewma: Adjust import-path....* gnu/packages/golang.scm (go-github-com-vividcortex-ewma)[arguments]:
Adjust import-path to location other go packages expect it to be.
| Efraim Flashner |
