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2021-08-04gnu: r-tab: Update to 5.1.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-tab): Update to 5.1.1. [propagated-inputs]: Remove r-gee, r-survival, and r-xtable; add r-kableextra. [native-inputs]: Add r-knitr.
2021-08-04gnu: r-rbibutils: Update to 2.2.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-rbibutils): Update to 2.2.2.
2021-08-04gnu: r-haven: Update to 2.4.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-haven): Update to 2.4.3. [source]: Simplify snippet. [synopsis]: Remove quotes. [description]: Fix typo and remove one word.
2021-08-04gnu: r-ggpmisc: Update to 0.4.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggpmisc): Update to 0.4.2. [propagated-inputs]: Remove r-glue, r-gridextra, r-stringr, r-xts, and r-zoo.
2021-08-04gnu: r-ggpp: Update to 0.4.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggpp): Update to 0.4.2.
2021-08-04gnu: Add r-keras.Ricardo Wurmus
* gnu/packages/cran.scm (r-keras): New variable.
2021-08-04gnu: Add r-tensorflow.Ricardo Wurmus
* gnu/packages/cran.scm (r-tensorflow): New variable.
2021-08-04gnu: Add r-tfruns.Ricardo Wurmus
* gnu/packages/cran.scm (r-tfruns): New variable.
2021-08-04gnu: python2-renpy: Update to 7.4.8.Leo Prikler
* gnu/packages/game-development.scm (python2-renpy): Update to 7.4.8.
2021-08-04gnu: python-pygame-sdl2: Update to renpy-version 7.4.8.Leo Prikler
* gnu/packages/game-development.scm (python-pygame-sdl2): Update to renpy-version 7.4.8.
2021-08-04gnu: Add instead.Dmitry Polyakov
* gnu/packages/game-development.scm (instead): New variable. * gnu/packages/patches/instead-use-games-path.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it here.
2021-08-04gnu: ldb: Update to 2.4.0.Efraim Flashner
* gnu/packages/samba.scm (ldb): Update to 2.4.0.
2021-08-04gnu: talloc: Update to 2.3.3.Efraim Flashner
* gnu/packages/samba.scm (talloc): Update to 2.3.3.
2021-08-04gnu: tdb: Update to 1.4.5.Efraim Flashner
* gnu/packages/databases.scm (tdb): Update to 1.4.5.
2021-08-04gnu: samba: Update to 4.13.10.Efraim Flashner
* gnu/packages/samba.scm (samba): Update to 4.13.10. [source]: Remove patch. * gnu/packages/patches/samba-fix-fcntl-hint-detection.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it.
2021-08-04gnu: tevent: Update to 0.11.0.Efraim Flashner
* gnu/packages/samba.scm (tevent): Update to 0.11.0. [native-inputs]: Add cmocka.
2021-08-04gnu: mpg123: Update to 1.28.2.Efraim Flashner
* gnu/packages/mp3.scm (mpg123): Update to 1.28.2.
2021-08-04gnu: tuir: Respect #:tests?.Efraim Flashner
* gnu/packages/syndication.scm (tuir)[arguments]: Adjust custom 'check phase to skip tests when requested.
2021-08-04gnu: Add r-tximeta.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-tximeta): New variable.
2021-08-04gnu: emacs-elpher: Update to 3.2.1.Simon South
* gnu/packages/emacs-xyz.scm (emacs-elpher): Update to 3.2.1. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-08-04gnu: emacs-pyim: Update to 3.9.4.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-pyim): Update to 3.9.4.
2021-08-04gnu: emacs-znc: Update to 0.4.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-znc): Update to 0.4. [source]: Use Github source location instead of Marmalade.
2021-08-04gnu: Add rust-boomphf-0.5.Efraim Flashner
* gnu/packages/crates-io.scm (rust-boomphf-0.5): New variable.
2021-08-04gnu: Add rust-wyhash-0.5.Efraim Flashner
* gnu/packages/crates-io.scm (rust-wyhash-0.5): New variable.
2021-08-04gnu: Add rust-succinct-0.5.Efraim Flashner
* gnu/packages/crates-io.scm (rust-succinct-0.5): New variable.
2021-08-04gnu: Add rust-quick-csv-0.1.Efraim Flashner
* gnu/packages/crates-io.scm (rust-quick-csv-0.1): New variable.
2021-08-04gnu: Add rust-gfa-0.10.Efraim Flashner
* gnu/packages/crates-io.scm (rust-gfa-0.10): New variable. (rust-gfa-0.6): Inherit from rust-gfa-0.10.
2021-08-04gnu: Add tensorflow-lite.Ricardo Wurmus
* gnu/packages/machine-learning.scm (tensorflow-lite): New variable.
2021-08-04gnu: flatbuffers: Update to 2.0.0.Ricardo Wurmus
* gnu/packages/serialization.scm (flatbuffers): Update to 2.0.0. [source]: Fetch sources from git. [arguments]: Make git checkout writable; Enable building shared library.
2021-08-04gnu: Add eigen-for-tensorflow-lite.Ricardo Wurmus
* gnu/packages/algebra.scm (eigen-for-tensorflow-lite): New variable.
2021-08-04gnu: mercurial: Update to 5.8.1.Xinglu Chen
* gnu/packages/version-control (mercurial): Update to 5.8.1. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-08-04gnu: git-annex: Update to 8.20210803.Kyle Meyer
* gnu/packages/haskell-apps.scm (git-annex): Update to 8.20210803. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-08-04gnu: Add bitwise.Guix Together
* gnu/packages/maths.scm (bitwise): New variable. Co-authored-by: jgart <jgart@dismail.de> Co-authored-by: Julien Lepiller <julien@lepiller.eu> Co-authored-by: Ryan Prior <rprior@protonmail.com> Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-08-04gnu: fetchmail: Update to 6.4.20 [fixes CVE-2021-38386].Xinglu Chen
* gnu/packages/mail.scm (fetchmail): Update to 6.4.20. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-08-04gnu: gprolog: Update to 1.5.0.Efraim Flashner
* gnu/packages/prolog.scm (gprolog): Update to 1.5.0. [arguments]: Rename custom 'change-dir-n-fix-shells to 'change-dir and remove substitution.
2021-08-04gnu: Add nncp.Arun Isaac
* gnu/packages/uucp.scm (nncp): New variable.
2021-08-04services: guix: Use "match-record" in activation.Brice Waegeneire
It's more explicit to specify used fields instead of depending on their position. * gnu/services/base.scm (guix-activation): Replace "match" with "match-record".
2021-08-03gnu: dehydrated: Follow up commit to 77e2df870b.Maxim Cournoyer
* gnu/packages/tls.scm (dehydrated): Remove bogus, nested native-search-paths.
2021-08-03gnu: dehydrated: Declare cURL's native search paths.Tobias Geerinckx-Rice
* gnu/packages/tls.scm (dehydrated)[native-search-paths]: Use curl's. Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-08-03gnu: Add scanbd.Tobias Geerinckx-Rice
* gnu/packages/scanner.scm (scanbd): New public variable. Modified-by: Maxim Cournoyer <maxim.cournoyer@gmail.com> Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-08-03gnu: zchunk: Patch references to the 'zstd' command line tool.Maxim Cournoyer
Fixes https://issues.guix.gnu.org/49795. * gnu/packages/compression.scm (zchunk) [phases]{patch-paths}: New phase. [inputs]: Add zstd. [propagated-inputs]: Relabel the zstd "lib" as "zstd:lib". Reported-by: Christopher Howard <christopher@librehacker.com>
2021-08-03gnu: Add python-xxhash.Ricardo Wurmus
* gnu/packages/digest.scm (python-xxhash): New variable.
2021-08-03gnu: Add r-spectre.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-spectre): New variable.
2021-08-03gnu: Add r-rgeos.Ricardo Wurmus
* gnu/packages/cran.scm (r-rgeos): New variable.
2021-08-03gnu: Add r-qs.Ricardo Wurmus
* gnu/packages/cran.scm (r-qs): New variable.
2021-08-03gnu: Add r-rapiserialize.Ricardo Wurmus
* gnu/packages/cran.scm (r-rapiserialize): New variable.
2021-08-03gnu: Add r-stringfish.Ricardo Wurmus
* gnu/packages/cran.scm (r-stringfish): New variable.
2021-08-03gnu: Add r-exactextractr.Ricardo Wurmus
* gnu/packages/cran.scm (r-exactextractr): New variable.
2021-08-02Reinstate "services: Add a service for Jami."Maxim Cournoyer
This reverts commit 4673f817938d9d2b1b40a072ab2e0c44a32ccc97, which reverted commit 69dcc24c9f0cdfea674eb690e7755d26a25ced2b with the fix detailed below. Thanks to Christopher Baines for reporting the failure and proposing a fix. * guix/self.scm (compiled-guix) [*system-test-modules*]: Add the test data files via the 'extra-files' argument. * gnu/local.mk (dist_patch_DATA): Move the tests/data/jami-dummy-account.dat file to... * gnu/local.mk (MODULES_NOT_COMPILED): ... here.
2021-07-27gnu: RawTherapee: Use HTTPS URLs.Leo Famulari
* gnu/packages/photo.scm (rawtherapee)[source, home-page]: Use HTTPS URLs.
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