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2020-06-13gnu: r-preprocesscore: Update to 1.50.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-preprocesscore): Update to 1.50.0.
2020-06-13gnu: Add r-dot.Ricardo Wurmus
* gnu/packages/cran.scm (r-dot): New variable.
2020-06-13gnu: Add r-v8.Ricardo Wurmus
* gnu/packages/cran.scm (r-v8): New variable.
2020-06-13gnu: Add r-scatterpie.Ricardo Wurmus
* gnu/packages/cran.scm (r-scatterpie): New variable.
2020-06-13gnu: Add r-gprofiler2.Ricardo Wurmus
* gnu/packages/cran.scm (r-gprofiler2): New variable.
2020-06-13gnu: node: Build shared library.Ricardo Wurmus
* gnu/packages/node.scm (node)[arguments]: Build shared library.
2020-06-13gnu: r-gprofiler: Move to (gnu packages cran).Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-gprofiler): Move this variable from here... * gnu/packages/cran.scm (r-gprofiler): ...to here.
2020-06-12gnu: guile-sqlite3: Update to 0.1.1.Ludovic Courtès
* gnu/packages/guile.scm (guile-sqlite3): Update to 0.1.1. [source]: Remove 'patches', 'modules', and 'snippet'. * gnu/packages/patches/guile-sqlite3-fix-cross-compilation.patch: Remove. * gnu/local.mk (dist_patch_DATA): Adjust accordingly.
2020-06-12gnu: Add liblogging.Katherine Cox-Buday
* gnu/packages/c.scm (liblogging): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-06-12gnu: Add libfastjson.Katherine Cox-Buday
* gnu/packages/c.scm (libfastjson): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-06-12gnu: Add libestr.Katherine Cox-Buday
* gnu/packages/c.scm (libestr): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-06-12gnu: Add emacs-shell-pop.Ryan Desfosses
* gnu/packages/emacs-xyz.scm (emacs-shell-pop): New variable Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-06-12gnu: Fix apache mirror URIs.Efraim Flashner
* gnu/packages/web.scm (serf)[source]: Remove redundant part of URI. * gnu/packages/java.scm (ant-bootstrap, java-commons-httpclient, java-jakarta-oro)[source]: Same. * gnu/packages/maven.scm (maven-shared-utils, maven-plugin-annotations, maven-wagon-provider-api, maven-artifact)[source]: Same.
2020-06-12system: image: Do not produce an HFS tree when building an ISO.Mathieu Othacehe
Use "mbr_only" mode to make sure that no HFS+ tree are generated. * gnu/system/image.scm (system-image): Set MKRESCUE_SED_MODE to "mbr_only".
2020-06-12gnu: xf86-input-libinput: Reduce closure size.Pierre Neidhardt
* gnu/packages/xorg.scm (xf86-input-libinput)[inputs]: Replace libinput by libinput-minimal.
2020-06-12gnu: icecat: Fix WebGL support.Ekaitz Zarraga
* gnu/packages/gnuzilla.scm (icecat): Wrap mesa. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2020-06-12shepherd: 'read-pid-file/container' terminates the whole process group.Ludovic Courtès
This mirrors a change made in the Shepherd 0.8.0. Previously, upon startup failure, we could have left processes behind. * gnu/build/shepherd.scm (read-pid-file/container): Kill (- PID) instead of PID.
2020-06-12shepherd: Unblock signals in the child process.Ludovic Courtès
Fixes <https://bugs.gnu.org/41791>. Reported by Tobias Geerinckx-Rice <me@tobias.gr>. This change mirrors changes made in the Shepherd 0.8.1, where signals are blocked in the shepherd process in support of 'signalfd'. The regression was introduced with the switch to 0.8.1 in 3f9c62d1a8b345909adaeb22f454ad22554c55a1: child processes would not receive SIGTERM upon 'herd stop SERVICE'. * gnu/build/shepherd.scm <top level>: Autoload (shepherd system). (make-forkexec-constructor/container): Call call to 'sigaction' and 'unblock-signals'.
2020-06-11gnu: Add exercism and dependencies.Jakub Kądziołka
* gnu/packages/education.scm (exercism): New variable. * gnu/packages/patches/exercism-disable-self-update.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/golang.scm (go-github-com-spf13-afero) (go-github-com-spf13-cast) (go-github-com-spf13-cobra) (go-github-com-spf13-jwalterweatherman) (go-github-com-spf13-viper) (go-github-com-fsnotify-fsnotify) (go-github-com-magiconair-properties) (go-github-com-pelletier-go-toml) (go-github-com-subosito-gotenv) (go-gopkg-in-ini-v1) (go-github-com-mitchellh-mapstructure): New variables.
2020-06-11gnu: linux-libre: Update to 5.4.46.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.46. (linux-libre-5.4-pristine-source): Update hash.
2020-06-11gnu: linux-libre@5.7: Update to 5.7.2.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-5.7-version): Update to 5.7.128. (linux-libre-5.7-pristine-source): Update hash.
2020-06-11gnu: linux-libre@5.6: Remove.Mark H Weaver
Users of linux-libre-5.6 should migrate to version 5.7. * gnu/packages/linux.scm (deblob-scripts-5.6, linux-libre-5.6-version) (linux-libre-5.6-pristine-source, linux-libre-5.6-source) (linux-libre-headers-5.6, linux-libre-arm-generic-5.6) (linux-libre-arm64-generic-5.6): Remove variables.
2020-06-11gnu: linux-libre@4.19: Update to 4.19.128.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.128. (linux-libre-4.19-pristine-source): Update hash.
2020-06-11gnu: linux-libre@4.14: Update to 4.14.184.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.184. (linux-libre-4.14-pristine-source): Update hash.
2020-06-11gnu: linux-libre@4.9: Update to 4.9.227.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.227. (linux-libre-4.9-pristine-source): Update hash.
2020-06-11gnu: linux-libre@4.4: Update to 4.4.227.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.227. (linux-libre-4.4-pristine-source): Update hash.
2020-06-11gnu: adns: Update to 1.6.0.Efraim Flashner
* gnu/packages/adns.scm (adns): Update to 1.6.0. [source]: Use https. [native-inputs]: Add m4.
2020-06-11gnu: subversion: Update to 1.14.0.Efraim Flashner
* gnu/packages/version-control.scm (subversion): Update to 1.14.0. [source]: Update source URI.
2020-06-11gnu: nghttp2: Replace with version 1.41 [fixes CVE-2020-11080].Ludovic Courtès
* gnu/packages/web.scm (nghttp2-1.41): New variable. (nghttp2)[replacement]: New field.
2020-06-11gnu: r-with-tests, r-minimal: Update to 4.0.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-with-tests, r-minimal): Update to 4.0.1.
2020-06-11gnu: r-brms: Update to 2.13.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-brms): Update to 2.13.0.
2020-06-11gnu: r-crochet: Update to 2.3.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-crochet): Update to 2.3.0. [native-inputs]: Add r-knitr.
2020-06-11gnu: r-openmx: Update to 2.17.4.Ricardo Wurmus
* gnu/packages/cran.scm (r-openmx): Update to 2.17.4.
2020-06-11gnu: r-stanheaders: Update to 2.21.0-5.Ricardo Wurmus
* gnu/packages/cran.scm (r-stanheaders): Update to 2.21.0-5. [propagated-inputs]: Add r-rcppeigen and r-rcppparallel.
2020-06-11gnu: r-semtools: Update to 0.5-3.Ricardo Wurmus
* gnu/packages/cran.scm (r-semtools): Update to 0.5-3.
2020-06-11gnu: r-sem: Update to 3.1-11.Ricardo Wurmus
* gnu/packages/cran.scm (r-sem): Update to 3.1-11.
2020-06-11gnu: r-emplik: Update to 1.1-1.Ricardo Wurmus
* gnu/packages/cran.scm (r-emplik): Update to 1.1-1.
2020-06-11gnu: r-rsvg: Update to 2.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-rsvg): Update to 2.1. [native-inputs]: Add r-knitr.
2020-06-11gnu: r-actuar: Update to 3.0-0.Ricardo Wurmus
* gnu/packages/cran.scm (r-actuar): Update to 3.0-0.
2020-06-11gnu: r-gdina: Update to 2.8.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-gdina): Update to 2.8.0.
2020-06-11gnu: r-seewave: Update to 2.1.6.Ricardo Wurmus
* gnu/packages/cran.scm (r-seewave): Update to 2.1.6. [inputs]: Add libsndfile.
2020-06-11gnu: r-elasticnet: Update to 1.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-elasticnet): Update to 1.3.
2020-06-11gnu: r-showtext: Update to 0.8-1.Ricardo Wurmus
* gnu/packages/cran.scm (r-showtext): Update to 0.8-1.
2020-06-11gnu: r-showtextdb: Update to 3.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-showtextdb): Update to 3.0.
2020-06-11gnu: r-abcrlda: Update to 1.0.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-abcrlda): Update to 1.0.3.
2020-06-11gnu: r-rgdal: Update to 1.5-10.Ricardo Wurmus
* gnu/packages/cran.scm (r-rgdal): Update to 1.5-10. [native-inputs]: Add r-knitr.
2020-06-11gnu: r-parameters: Update to 0.8.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-parameters): Update to 0.8.0.
2020-06-11gnu: r-systemfonts: Update to 0.2.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-systemfonts): Update to 0.2.3.
2020-06-11gnu: r-rhpcblasctl: Update to 0.20-137.Ricardo Wurmus
* gnu/packages/cran.scm (r-rhpcblasctl): Update to 0.20-137.
2020-06-11gnu: r-ggraph: Update to 2.0.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggraph): Update to 2.0.3.
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