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2016-10-27gnu: python-urllib3: Update to 1.18.1.Marius Bakke
* gnu/packages/python.scm (python-urllib3): Update to 1.18.1. [home-page]: Use https URL.
2016-10-27tests: Test installation with a RAID root partition.Ludovic Courtès
* gnu/tests/install.scm (%raid-root-os, %raid-root-os-source) (%raid-root-installation-script, %test-raid-root-os): New variables.
2016-10-27file-systems: 'disk-partitions' detected partitions from mapped devices.Ludovic Courtès
Previously, partitions of mdadm- or cryptsetup-produced block devices would not be returned by 'disk-partitions'. * gnu/build/file-systems.scm (disk-partitions)[last-character]: New procedure. [partition?]: Add 'name' parameter and rewrite. Adjust caller. * gnu/build/file-systems.scm (ENOENT-safe): Silently ignore ENOMEDIUM.
2016-10-27tests: Add #:memory-size parameter for the command to run the installed OS.Ludovic Courtès
* gnu/tests/install.scm (qemu-command/writable-image): Add #:memory-size parameter and honor it.
2016-10-27mapped-devices: Use 'mdadm-static' in 'raid-device-mapping'.Ludovic Courtès
* gnu/system/mapped-devices.scm (open-raid-device, close-raid-device): Use MDADM-STATIC instead of MDADM. Use 'file-append'.
2016-10-27gnu: Add mdadm-static.Ludovic Courtès
* gnu/packages/linux.scm (mdadm-static): New variable.
2016-10-27gnu: libmikmod: Update to 3.3.10.Efraim Flashner
* gnu/packages/sdl.scm (libmikmod): Update to 3.3.10.
2016-10-27gnu: sdl2: Update to 2.0.5.Efraim Flashner
* gnu/packages/sdl.scm (sdl2): Update to 2.0.5.
2016-10-27gnu: Use 'https' for libsdl urls.Efraim Flashner
* gnu/packages/sdl.scm (sdl, sdl2, sdl-image, sdl-mixer, sdl-net) (sdl-ttf, sdl2-image, sdl2-ttf)[source]: Use https. [home-page]: Use https.
2016-10-27gnu: mcelog: Update to 144.Tobias Geerinckx-Rice
* gnu/packages/linux.scm (mcelog): Update to 144.
2016-10-27gnu: btrfs-progs: Update to 4.8.2.Tobias Geerinckx-Rice
* gnu/packages/linux.scm (btrfs-progs): Update to 4.8.2.
2016-10-27gnu: gnupg: Add support for pcsc-lite.Mike Gerwitz
* gnu/packages/gnupg.scm (gnupg)[inputs]: Add pcsc-lite. [arguments]: Rename phase 'patch-config-files' to 'patch-paths'. Patch `scd/scdaemon.c' with absolute path of libpcsclite.so. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-10-27gnu: Add pcsc-lite.Mike Gerwitz
* gnu/packages/security-token.scm (pcsc-lite): New variable. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-10-27gnu: Add dbacl.ng0
* gnu/packages/textutils.scm (dbacl): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-10-27gnu: valgrind: Use 'modify-phases' syntax.Efraim Flashner
* gnu/packages/valgrind.scm (valgrind)[arguments]: Use 'modify-phases' syntax.
2016-10-27gnu: valgrind: Update to 3.12.0.Efraim Flashner
* gnu/packages/valgrind.scm (valgrind): Update to 3.12.0.
2016-10-27gnu: python-pathlib2: Add comment.Hartmut Goebel
As suggested by Efraim Flashner. * gnu/packages/python.scm (python-pathlib2): Add comment.
2016-10-26gnu: shotwell: Update to 0.25.0.Leo Famulari
* gnu/packages/gnome.scm (shotwell): Update to 0.25.0. [inputs]: Add gcr.
2016-10-26gnu: vdirsyncer: Update to 0.14.0.Leo Famulari
* gnu/packages/dav.scm (vdirsyncer): Update to 0.14.0.
2016-10-27tests: Test installation with store on a separate partition.Ludovic Courtès
This is a followup to 0f65f54ebd76324653fd5506a7dab42ee44d9255. * gnu/tests/install.scm (%separate-store-os, %separate-store-os-source) (%separate-store-installation-script, %test-separate-store-os): New variables.
2016-10-26gnu: Add lci.ng0
* gnu/packages/lolcode.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-10-26gnu: Add autossh.Christopher Allan Webber
* gnu/packages/ssh.scm (autossh): New variable.
2016-10-26gnu: r: Update to 3.3.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r): Update to 3.3.1.
2016-10-26gnu: r-matrixstats: Update to 0.51.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-matrixstats): Update to 0.51.0.
2016-10-26gnu: r-r-utils: Update to 2.4.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-r-utils): Update to 2.4.0.
2016-10-26gnu: r-irlba: Update to 2.1.2.Ricardo Wurmus
* gnu/packages/statistics.scm (r-irlba): Update to 2.1.2.
2016-10-26gnu: r-codetools: Update to 0.2-15.Ricardo Wurmus
* gnu/packages/statistics.scm (r-codetools): Update to 0.2-15.
2016-10-26gnu: r-snow: Update to 0.4-2.Ricardo Wurmus
* gnu/packages/statistics.scm (r-snow): Update to 0.4-2.
2016-10-26gnu: r-backports: Update to 1.0.4.Ricardo Wurmus
* gnu/packages/statistics.scm (r-backports): Update to 1.0.4.
2016-10-26gnu: r-foreign: Update to 0.8-67.Ricardo Wurmus
* gnu/packages/statistics.scm (r-foreign): Update to 0.8-67.
2016-10-26gnu: r-cluster: Update to 2.0.5.Ricardo Wurmus
* gnu/packages/statistics.scm (r-cluster): Update to 2.0.5.
2016-10-26gnu: r-acepack: Update to 1.4.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-acepack): Update to 1.4.0.
2016-10-26gnu: r-r6: Update to 2.2.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-r6): Update to 2.2.0.
2016-10-26gnu: r-evaluate: Update to 0.10.Ricardo Wurmus
* gnu/packages/statistics.scm (r-evaluate): Update to 0.10.
2016-10-26gnu: r-reshape2: Update to 1.4.2.Ricardo Wurmus
* gnu/packages/statistics.scm (r-reshape2): Update to 1.4.2.
2016-10-26gnu: r-stringi: Update to 1.1.2.Ricardo Wurmus
* gnu/packages/statistics.scm (r-stringi): Update to 1.1.2.
2016-10-26gnu: r-matrix: Update to 1.2-7.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-matrix): Update to 1.2-7.1.
2016-10-26gnu: r-colorspace: Update to 1.2-7.Ricardo Wurmus
* gnu/packages/statistics.scm (r-colorspace): Update to 1.2-7.
2016-10-26gnu: r-jsonlite: Update to 1.1.Ricardo Wurmus
* gnu/packages/web.scm (r-jsonlite): Update to 1.1.
2016-10-26gnu: r-curl: Update to 2.2.Ricardo Wurmus
* gnu/packages/web.scm (r-curl): Update to 2.2.
2016-10-26gnu: r-seqinr: Update to 3.3-3.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-seqinr): Update to 3.3-3.
2016-10-26gnu: r-rcpparmadillo: Update to 0.7.500.0.0.Ricardo Wurmus
* gnu/packages/maths.scm (armadillo-for-rcpparmadillo): Update to 7.500.0. * gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.7.500.0.0.
2016-10-26gnu: armadillo: Update to 7.500.0.Ricardo Wurmus
* gnu/packages/maths.scm (armadillo): Update to 7.500.0.
2016-10-26gnu: r-rmarkdown: Update to 1.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.1. [propagated-inputs]: Add r-evaluate, r-tibble.
2016-10-26gnu: bioperl-minimal: Update to 1.7.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (bioperl-minimal): Update to 1.7.0.
2016-10-26gnu: mupdf: Modify CVE-2016-8674 patch to apply to 1.9a.Marius Bakke
The fix from upstream did not apply cleanly due to many context changes. This was adapted by cloning mupdf 1.9a from git and fixing conflicts after applying our patches and cherry-picking upstream commit 1e03c06. This is a follow-up to 47a04fca999b91309d196afc9ebf4d8ac6f2083f. * gnu/packages/patches/mupdf-CVE-2016-8674.patch: Adapt to 1.9a.
2016-10-26gnu: python-certifi: Update to 2016.8.31.ng0
* gnu/packages/python.scm (python-certifi): Update to 2016.8.31. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-10-26gnu: security-token: Use 'license:' prefix.Marius Bakke
* gnu/packages/security-token.scm (libyubikey)[license]: Add prefix. (ykclient)[license]: Add prefix.
2016-10-26gnu: yubico.scm: Rename to security-token.scm.Marius Bakke
* gnu/packages/yubico.scm: Delete file. * gnu/packages/security-token.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Adjust accordingly.
2016-10-26gnu: offlineimap: Install documentation.Marius Bakke
* gnu/packages/mail.scm (offlineimap)[native-inputs]: Add asciidoc and libxslt. [arguments]: Add phases 'build-documentation' and 'install-documentation' to build and install manpages. Also remove unneeded key 'inputs' from 'wrap-binary' phase.
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