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2023-03-21gnu: r-glmmtmb: Update to 1.1.6....* gnu/packages/cran.scm (r-glmmtmb): Update to 1.1.6. Ricardo Wurmus
2023-03-21gnu: r-fnn: Update to 1.1.3.2....* gnu/packages/cran.scm (r-fnn): Update to 1.1.3.2. Ricardo Wurmus
2023-03-21gnu: r-truncnorm: Update to 1.0-9....* gnu/packages/cran.scm (r-truncnorm): Update to 1.0-9. Ricardo Wurmus
2023-03-21gnu: r-partykit: Update to 1.2-19....* gnu/packages/cran.scm (r-partykit): Update to 1.2-19. Ricardo Wurmus
2023-03-21gnu: r-nmf: Update to 0.26....* gnu/packages/bioconductor.scm (r-nmf): Update to 0.26. Ricardo Wurmus
2023-03-21gnu: sbcl-history-tree: Update to 0.1.1....* gnu/packages/lisp-xyz.scm (sbcl-history-tree): Update to 0.1.1. Pierre Neidhardt
2023-03-21gnu: r-singlecellexperiment: Update to 1.20.1....* gnu/packages/bioconductor.scm (r-singlecellexperiment): Update to 1.20.1. Ricardo Wurmus
2023-03-21gnu: r-variancepartition: Update to 1.28.9....* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.28.9. Ricardo Wurmus
2023-03-21gnu: r-biocparallel: Update to 1.32.6....* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.32.6. Ricardo Wurmus
2023-03-20gnu: Add mygnuhealth....* gnu/packages/medical.scm (mygnuhealth): New variable. Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com> Co-authored-by: Morgan Smith <Morgan.J.Smith@outlook.com> Modified-by: Maxim Cournoyer <maxim.cournoyer@gmail.com> Petr Hodina
2023-03-20gnu: zabbix-agentd: Update to 6.0.14....* gnu/packages/monitoring.scm (zabbix-agentd): Update to 6.0.14. Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com> Kaelyn Takata
2023-03-20gnu: tesseract-ocr: Use standard TESSDATA_PREFIX....* gnu/packages/ocr.scm (tesseract-ocr-tessdata-fast): Install data to 'share/tessdata' prefix rather than 'share/tesseract-ocr/tessdata'. (tesseract-ocr) [arguments]: Delete adjust-TESSDATA_PREFIX-macro. Adjust installation prefix in install-minimal-tessdata phase. [native-search-paths]: Search for files under share/tessdata directly. Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com> Simon South
2023-03-20gnu: emacs-magit-gerrit: Update to 0.4-1.a975215....* gnu/packages/emacs-xyz.scm (emacs-magit-gerrit): Update to 0.4-1.a975215. Maxim Cournoyer
2023-03-20gnu: emacs-magit: Update to 3.3.0-4.a760dd1....This update resolves a problem where configuring a remote would result in the error "Symbol’s function definition is void: transient--with-suspended-override". * gnu/packages/emacs-xyz.scm (emacs-magit): Update to 3.3.0-4.a760dd1. Maxim Cournoyer
2023-03-20gnu: emacs-transient: Update to 0.3.7-1.0ae0de4....* gnu/packages/emacs-xyz.scm (emacs-transient): Update to 0.3.7-1.0ae0de4. [propagated-inputs]: Remove emacs-dash; add emacs-compat. Maxim Cournoyer
2023-03-21gnu: lepton-eda: Update to 1.9.18-20220529....* gnu/packages/engineering.scm (lepton-eda): Update to 1.9.18-20220529. [inputs]: Add guile-readline. [arguments]: Adjust build phase 'fix-dynamic-link; add build phase 'fix-tests. Ricardo Wurmus
2023-03-21gnu: Add ctrlr....* gnu/packages/music.scm (ctrlr): New variable. Ricardo Wurmus
2023-03-20gnu: openjdk10: Apply patch again....This partially reverts commit 7636c49b45adb9870cf416c64bde032ec858a820 where the patch was dropped. * gnu/packages/java.scm (openjdk10)[source]: Apply patch. Andreas Enge
2023-03-20gnu: Add r-annotationhubdata....* gnu/packages/bioconductor.scm (r-annotationhubdata): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net> Mădălin Ionel Patrașcu
2023-03-20gnu: Add r-affylmgui....* gnu/packages/bioconductor.scm (r-affylmgui): New variable. Mădălin Ionel Patrașcu
2023-03-20gnu: Add r-tkrplot....* gnu/packages/cran.scm (r-tkrplot): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net>. Mădălin Ionel Patrașcu
2023-03-20gnu: Add r-affyplm....* gnu/packages/bioconductor.scm (r-affyplm): New variable. Mădălin Ionel Patrașcu
2023-03-20gnu: Add r-affyilm....* gnu/packages/bioconductor.scm (r-affyilm): New variable. Mădălin Ionel Patrașcu
2023-03-20gnu: python-google-api-client: Update to 1.12.8....* gnu/packages/python-web.scm (python-google-api-client): Update to 1.12.8. [arguments]: Remove custom phase to adjust setup.py. [native-inputs]: Remove python-oauth2client, python-uritemplate. Move python-httplib2, python-six ... [propagated-inputs]: ... here. Add python-google-api-core-1, python-google-auth-1, python-google-auth-httplib2, python-uritemplate-3. Efraim Flashner
2023-03-20gnu: python-googleapis-common-protos: Update to 1.56.4....* gnu/packages/python-web.scm (python-googleapis-common-protos): Update to 1.56.4. [arguments]: Enable test suite. Efraim Flashner
2023-03-20gnu: Add python-google-api-core-1....* gnu/packages/python-web.scm (python-google-api-core-1): New variable. Efraim Flashner
2023-03-20gnu: Add python-google-auth-1....* gnu/packages/python-web.scm (python-google-auth-1): New variable. Efraim Flashner
2023-03-20gnu: Add python-google-auth-httplib2....* gnu/packages/python-web.scm (python-google-auth-httplib2): New variable. Efraim Flashner
2023-03-20gnu: Add python-uritemplate-3....* gnu/packages/python-web.scm (python-uritemplate-3): New variable. Efraim Flashner
2023-03-20gnu: python-httplib2: Update to 0.15.0....* gnu/packages/python-web.scm (python-httplib2): Update to 0.15.0. [source]: Download using git. [arguments]: Add a phase to adjust the test package version requirements. [native-inputs]: Add python-flake8, python-future, python-mock, python-pytest, python-pytest-cov, python-pytest-forked, python-pytest-randomly, python-pytest-timeout, python-pytest-xdist, python-six. [home-page]: Switch to new upstream homepage. Efraim Flashner
2023-03-20gnu: zig: Increase max-silent-time....* gnu/packages/zig.scm (zig-0.10)[properties]: Set max-silent-time to 3 hours. Efraim Flashner
2023-03-20gnu: Add transanno....* gnu/packages/bioinformatics.scm (transanno): New variable. Ricardo Wurmus
2023-03-20gnu: Add rust-autocompress-0.2....* gnu/packages/crates-io.scm (rust-autocompress-0.2): New variable. Ricardo Wurmus
2023-03-20gnu: Add rust-temp-testdir-0.2....* gnu/packages/crates-io.scm (rust-temp-testdir-0.2): New variable. Ricardo Wurmus
2023-03-20gnu: Add rust-bio-0.41....* gnu/packages/crates-io.scm (rust-bio-0.41): New variable. Ricardo Wurmus
2023-03-20gnu: ruby-rugged: Update to 1.6.2-0.6379f23 and enable tests....* gnu/packages/ruby.scm (ruby-rugged): Update to 1.6.2-0.6379f23. [source]: Fetch via git. [arguments]: Enable tests. Add #:phases. [native-inputs]: Add git-minimal/pinned. Remove ruby-minitest and ruby-pry. Maxim Cournoyer
2023-03-20gnu: python-django-rq: Update to 2.7.0....* gnu/packages/django.scm (python-django-rq): Update to 2.7.0. [arguments]: Replace django-admin.py with django-admin in check phase. Maxim Cournoyer
2023-03-20gnu: python-aioredis: Deprecate by python-redis....* gnu/packages/databases.scm (python-aioredis): Mark as deprecated by python-redis. Maxim Cournoyer
2023-03-20gnu: python-fakeredis: Update to 2.10.1 and enable tests....* gnu/packages/databases.scm (python-fakeredis): Update to 2.10.1. [source]: Fetch via git. [build-system]: Use pyproject-build-system. [arguments]: Enable tests. Add #:phases. [native-inputs]: New field. [propagated-inputs]: Remove python-aioredis and python-packaging. [home-page]: Update URL. Maxim Cournoyer
2023-03-20gnu: python-redis: Update to 4.5.2 and enable tests....* gnu/packages/databases.scm (python-redis): Update to 4.5.2. [source]: Fetch from git. [build-system]: Use pyproject-build-system. [arguments]: Enable tests. Add #:test-flags and #:phases. [native-inputs]: Add field. [propagated-inputs]: Add field. [home-page]: Update URL. Maxim Cournoyer
2023-03-20gnu: python-hiredis: Update to 2.2.2 and enable tests....* gnu/packages/databases.scm (python-hiredis): Update to 2.2.2. [source]: Fetch via git and apply patches. [build-system]: Use pyproject-build-system. [arguments]: Enable tests. Add #:phases. [native-inputs]: New field. [inputs]: Likewise. * gnu/packages/patches/python-hiredis-fix-header.patch: New file. * gnu/packages/patches/python-hiredis-use-system-hiredis.patch: Likewise. * gnu/local.mk (dist_patch_DATA): Register them. Maxim Cournoyer
2023-03-20gnu: hiredis: Update to 1.1.0....* gnu/packages/databases.scm (hiredis): Update to 1.1.0. Maxim Cournoyer
2023-03-20gnu: redis: Use gexps and streamline....* gnu/packages/databases.scm (redis) [arguments]: Merge the use-correct-tclsh into the patch-paths phase. Use 'which' instead of assoc-ref. Move the #:make-flags argument before the #:phases one. Use cc-for-target as the value of the CC make flag. [native-inputs]: Move field below arguments. Maxim Cournoyer
2023-03-20gnu: redis: Update to 7.0.9 [security fixes]....Fixes CVE-2023-25155, CVE-2022-36021 and more; see https://raw.githubusercontent.com/redis/redis/7.0/00-RELEASENOTES. * gnu/packages/databases.scm (redis): Update to 7.0.9. [native-inputs]: Add pkg-config and which. [arguments]: Add a patch-paths phase. Skip the AOF-related tests. [properties]: Add a lint-hidden-cve property. Maxim Cournoyer
2023-03-20services: network-manager: Add missing shadowing of 'iwd?' field....* gnu/services/networking.scm (network-manager-shepherd-service): Add missing shadowing of 'iwd?' field by using let* instead of let. Andrew Tropin
2023-03-20home: 'home-environment-with-provenance' uses the HE location info....* gnu/home.scm (home-environment-with-provenance): Make `config-file` optional, with the default taken from the HE location info. Signed-off-by: Andrew Tropin <andrew@trop.in> Sergey Trofimov
2023-03-20gnu: emacs-eshell-syntax-highlighting: Update to 0.3-0.1ba39a9....* gnu/packages/emacs-xyz.scm (emacs-eshell-syntax-highlighting): Update to 0.3-0.1ba39a9. Signed-off-by: Andrew Tropin <andrew@trop.in> conses
2023-03-20gnu: Add emacs-geiser-eros....* gnu/packages/emacs-xyz.scm (emacs-geiser-eros): New variable. Andrew Tropin
2023-03-19gnu: linux-libre: Update kernel configs for 6.2.7....* gnu/packages/aux-files/linux-libre/6.2-arm.conf, gnu/packages/aux-files/linux-libre/6.2-arm64.conf, gnu/packages/aux-files/linux-libre/6.2-i686.conf, gnu/packages/aux-files/linux-libre/6.2-x86_64.conf: Set some new configuration options. Leo Famulari
2023-03-19gnu: linux-libre 4.14: Update to 4.14.310....* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.310. (linux-libre-4.14-pristine-source, deblob-scripts-4.14): Update hashes. Leo Famulari