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2020-02-26gnu: Add r-loo.Ricardo Wurmus
* gnu/packages/cran.scm (r-loo): New variable.
2020-02-26gnu: Add r-rstantools.Ricardo Wurmus
* gnu/packages/cran.scm (r-rstantools): New variable.
2020-02-26gnu: Add r-shinystan.Ricardo Wurmus
* gnu/packages/cran.scm (r-shinystan): New variable.
2020-02-26gnu: Add r-dygraphs.Ricardo Wurmus
* gnu/packages/cran.scm (r-dygraphs): New variable.
2020-02-26gnu: Remove python-loompy-for-pigx-scrnaseq.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-loompy-for-pigx-scrnaseq): Remove variable.
2020-02-26gnu: pigx-scrnaseq: Update to 1.1.3.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (pigx-scrnaseq): Update to 1.1.3. [arguments]: Remove. [inputs]: Remove dropseq-tools and java-picard; add flexbar, jellyfish, and r-seurat; replace python-loompy-for-pigx-scrnaseq with python-loompy.
2020-02-25gnu: clang-runtime-3.5: Fix build.Ricardo Wurmus
* gnu/packages/llvm.scm (clang-runtime-3.5) [inputs]: Add libtirpc. [arguments]: Add phase to find rpc headers.
2020-02-25gnu: Add r-rsconnect.Ricardo Wurmus
* gnu/packages/cran.scm (r-rsconnect): New variable.
2020-02-25gnu: Add r-packrat.Ricardo Wurmus
* gnu/packages/cran.scm (r-packrat): New variable.
2020-02-25gnu: zrythm: Update to 0.7.573.Alexandros Theodotou
* gnu/packages/music.scm (zrythm): Update to 0.7.573. Signed-off-by: Jakub Kądziołka <kuba@kadziolka.net>
2020-02-25gnu: libzip: Update to 1.6.1.Marius Bakke
* gnu/packages/compression.scm (libzip): Update to 1.6.1. [inputs]: Add XZ.
2020-02-25gnu: python-xmlschema: Update to 1.1.1.Marius Bakke
* gnu/packages/xml.scm (python-xmlschema): Update to 1.1.1.
2020-02-25gnu: xapian: Update to 1.4.15.Marius Bakke
* gnu/packages/search.scm (xapian, python-xapian-bindings): Update to 1.4.15.
2020-02-25gnu: libgphoto2: Update to 2.5.24.Marius Bakke
* gnu/packages/photo.scm (libgphoto2): Update to 2.5.24.
2020-02-25gnu: fluidsynth: Update to 2.1.1.Marius Bakke
* gnu/packages/audio.scm (fluidsynth): Update to 2.1.1.
2020-02-25gnu: mbedtls-apache: Update to 2.16.5.Marius Bakke
* gnu/packages/tls.scm (mbedtls-apache): Update to 2.16.5.
2020-02-25gnu: ungoogled-chromium: Update to 80.0.3987.122-0.bb952f1 [security fixes].Marius Bakke
This release fixes CVE-2020-6407 and CVE-2020-6418. * gnu/packages/chromium.scm (%chromium-version): Set to 80.0.3987.122. (%ungoogled-revision): Update to 6056988937eb. (%chromium-origin): Update hash. (%ungoogled-origin): Download from pull request, update hash.
2020-02-25gnu: ungoogled-chromium-wayland: Fix build.Marius Bakke
* gnu/packages/chromium.scm (ungoogled-chromium/wayland)[arguments]: Add #:phases.
2020-02-25gnu: ungoogled-chromium: Add license information about preserved files.Marius Bakke
This is a follow-up to commit f613d459be9a91ca778d1a2d5ece941ee21469b5. * gnu/packages/chromium.scm (%preserved-third-party-files): Annotate newly added entries with license information.
2020-02-25gnu: emacs-geiser: Update to 0.11.2.Pierre Neidhardt
* gnu/packages/emacs-xyz.scm (emacs-geiser): Update to 0.11.2.
2020-02-25gnu: Add rust-syn-0.11 and rust-synom-0.11.Valentin Ignatev
* gnu/packages/crates-io.scm (rust-syn-0.11, rust-synom-0.11): New variables. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-02-25gnu: Add rust-walkdir-1.0.Valentin Ignatev
* gnu/packages/crates-io.scm (rust-walkdir-1.0): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-02-25gnu: rust-regex-syntax-0.3: Don't skip build.Efraim Flashner
* gnu/packages/crates-io.scm (rust-regex-syntax-0.3)[arguments]: Don't skip build.
2020-02-25gnu: Add rust-quickcheck-0.4.Valentin Ignatev
* gnu/packages/crates-io.scm (rust-quickcheck-0.4): New variable. (rust-quickcheck-0.2): Inherit from rust-quickcheck-0.4. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-02-25gnu: rust-conv-0.3: Don't skip build.Efraim Flashner
* gnu/packages/crates-io.scm (rust-conv-0.3)[source]: Add snippet to relax version requirements. [arguments]: Don't skip build.
2020-02-25gnu: Add rust-regex-0.1 and its cyclic dependencies.Valentin Ignatev
* gnu/packages/crates-io.scm (rust-regex-0.1, rust-aho-corasick-0.5, rust-byteorder-0.5, rust-csv-0.14, rust-docopt-0.6, rust-memchr-0.1, rust-utf8-ranges-0.1): New variables. (rust-env-logger-0.3)[arguments]: Add missing input. (rust-quickcheck-0.2)[arguments]: Don't skip build. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-02-25gnu: Add rust-obj-0.9.Valentin Ignatev
* gnu/packages/crates-io.scm (rust-obj-0.9): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-02-25gnu: Add rust-genmesh-0.6.Valentin Ignatev
* gnu/packages/crates-io.scm (rust-genmesh-0.6): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-02-25gnu: Add rust-cgmath-0.16.Valentin Ignatev
* gnu/packages/crates-io.scm (rust-cgmath-0.16): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-02-25gnu: Add rust-cgmath-0.17.Valentin Ignatev
* gnu/packages/crates-io.scm (rust-cgmath-0.17): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-02-25gnu: Add rust-rusttype-0.8.Valentin Ignatev
* gnu/packages/crates-io.scm (rust-rusttype-0.8): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-02-25gnu: Add rust-line-drawing-0.7.Valentin Ignatev
* gnu/packages/crates-io.scm (rust-line-drawing-0.7): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-02-25gnu: Add rust-image-0.20.Valentin Ignatev
* gnu/packages/crates-io.scm (rust-image-0.20): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-02-25gnu: Add rust-image-0.21.Valentin Ignatev
* gnu/packages/crates-io.scm (rust-image-0.21): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-02-25gnu: Add rust-image-0.22.Valentin Ignatev
* gnu/packages/crates-io.scm (rust-image-0.22): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-02-25gnu: Add rust-tiff-0.2.Valentin Ignatev
* gnu/packages/crates-io.scm (rust-tiff-0.2): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-02-25gnu: Add rust-tiff-0.3.Valentin Ignatev
* gnu/packages/crates-io.scm (rust-tiff-0.3): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-02-25gnu: Add rust-jpeg-decoder-0.1.Valentin Ignatev
* gnu/packages/crates-io.scm (rust-jpeg-decoder-0.1): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-02-25gnu: jamm: Update to 1.0.7.6.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (jamm): Update to 1.0.7.6.
2020-02-25gnu: Add r-bsgenome-hsapiens-ncbi-grch38.Mădălin Ionel Patrașcu
* gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ncbi-grch38): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-02-25gnu: plantuml: Update to 1.2020.1.Jelle Licht
* gnu/packages/uml.scm (plantuml): Update to 1.2020.1. [arguments]<#:phases>[delete-extra-from-classpath]: Modify.
2020-02-25gnu: Add rust-png-0.12.Valentin Ignatev
* gnu/packages/crates-io.scm (rust-png-0.12): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-02-25gnu: Add rust-png-0.14.Valentin Ignatev
* gnu/packages/crates-io.scm (rust-png-0.14): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-02-25gnu: Add rust-png-0.15.Valentin Ignatev
* gnu/packages/crates-io.scm (rust-png-0.15): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-02-25gnu: Add rust-servo-fontconfig-0.4.Valentin Ignatev
* gnu/packages/crates-io.scm (rust-servo-fontconfig-0.4): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-02-25gnu: Add rust-servo-fontconfig-sys-4.Valentin Ignatev
* gnu/packages/crates-io.scm (rust-servo-fontconfig-sys-4): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-02-25gnu: Add rust-servo-freetype-sys-4.Valentin Ignatev
* gnu/packages/crates-io.scm (rust-servo-freetype-sys-4): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-02-25gnu: rust-nix-0.15: Don't skip build.Efraim Flashner
* gnu/packages/crates-io.scm (rust-nix-0.15)[arguments]: Don't skip build. Skip tests. Move rust-cc-1.0 from cargo-development-inputs to cargo-inputs. Replace rust-rand-0.4 with 0.6, rust-sysctl-0.4 with 0.1 in cargo-development-inputs.
2020-02-25gnu: Add rust-sema-0.1.Valentin Ignatev
* gnu/packages/crates-io.scm (rust-sema-0.1): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-02-25gnu: Add rust-expat-sys-2.1.Valentin Ignatev
* gnu/packages/crates-io.scm (rust-expat-sys-2.1): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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