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2016-05-24gnu: libxml2: Fix CVE-2016-3627 and CVE-2016-3705.Ludovic Courtès
* gnu/packages/patches/libxml2-CVE-2016-3627.patch, gnu/packages/patches/libxml2-CVE-2016-3705.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/xml.scm (libxml2)[replacement]: New field. (libxml2/fixed): New variable.
2016-05-24build: Use "%D%" in Makefile fragments.Mathieu Lirzin
* doc/local.mk: Use "%D%" for the directory of the fragment relative to the base 'Makefile.am'. * emacs/local.mk: Likewise. * gnu/local.mk: Likewise. * nix/local.mk: Likewise.
2016-05-24gnu: Add emacs-clojure-mode.humanitiesNerd
* gnu/packages/emacs.scm (emacs-clojure-mode): New variable. Signed-off-by: Alex Kost <alezost@gmail.com>
2016-05-24gnu: Use 'emacs-minimal' instead of 'emacs-no-x'.Alex Kost
* gnu/packages/code.scm (cflow)[native-inputs]: Use 'emacs-minimal' instead of 'emacs-no-x'. * gnu/packages/databases.scm (recutils): Likewise. * gnu/packages/finance.scm (ledger): Likewise * gnu/packages/idutils.scm (idutils): Likewise. * gnu/packages/mail.scm (mu): Likewise. * gnu/packages/ocaml.scm (proof-general): Likewise. * gnu/packages/package-management.scm (guix-0.10.0): Likewise. * gnu/packages/plotutils.scm (asymptote): Likewise. * gnu/packages/scheme.scm (scmutils): Likewise. * gnu/packages/version-control.scm (vc-dwim): Likewise. * gnu/packages/emacs.scm (geiser): Likewise. (paredit): Likewise. (git-modes): Likewise. (magit): Likewise. (magit-svn): Likewise. (haskell-mode): Likewise. (let-alist): Likewise. (emacs-w3m): Likewise. (emacs-wget): Likewise. (emms): Likewise. (bbdb): Likewise. (emacs-mmm-mode): Likewise. (emacs-pdf-tools): Likewise. (emacs-popup)[native-inputs]: Remove as it is not needed for emacs-build-system. (emacs-rfcview): Likewise. (emacs-ffap-rfc-space): Likewise.
2016-05-24gnu: Move emacs for building from inputs to native-inputs.Alex Kost
* gnu/packages/emacs.scm (geiser): Move "emacs" from inputs to native-inputs. (paredit): Likewise. (haskell-mode): Likewise. (emacs-w3m): Likewise. (emacs-wget): Likewise. * gnu/packages/mail.scm (mu): Likewise. * gnu/packages/version-control.scm (vc-dwim): Likewise.
2016-05-24build-system/emacs: Use 'emacs-minimal' by default.Alex Kost
* guix/build-system/emacs.scm (default-emacs): Use 'emacs-minimal'. * gnu/packages/emacs.scm (emacs-auctex): Use 'emacs'.
2016-05-24gnu: Add emacs-minimal.Alex Kost
* gnu/packages/emacs.scm (emacs-minimal): New variable.
2016-05-24gnu: emacs: Remove *.elc and autoloads from the tarball.Alex Kost
* gnu/packages/emacs.scm (emacs)[source]: Add 'snippet' to remove compiled and generated elisp files.
2016-05-24gnu: enblend-enfuse: Update to 4.2.Efraim Flashner
* gnu/packages/photo.scm (enblend-enfuse): Update to 4.2. [native-inputs]: Add help2man, texlive-minimal.
2016-05-23gnu: grub: Re-enable test.Leo Famulari
* gnu/packages/grub.scm (grub)[arguments]: Re-enable test.
2016-05-23gnu: vdirsyncer: Update to 0.11.0.Leo Famulari
* gnu/packages/dav.scm (vdirsyncer): Update to 0.11.0.
2016-05-23gnu: git: Update to 2.8.3.Leo Famulari
* gnu/packages/version-control.scm (git): Update to 2.8.3. (git-manpages)[source]: Update hash.
2016-05-23gnu: Add r-zoo.Roel Janssen
* gnu/packages/statistics.scm (r-zoo): New variable. Signed-off-by: Leo Famulari <leo@famulari.name>
2016-05-23gnu: borg: Update to 1.0.3.Leo Famulari
* gnu/packages/backup.scm (borg): Update to 1.0.3. [source]: Remove pypi-uri.
2016-05-23gnu: Add poppler-qt5.Roel Janssen
* gnu/packages/pdf.scm (poppler-qt5): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-05-23gnu: Add slurm-drmaa.Ricardo Wurmus
* gnu/packages/parallel.scm (slurm-drmaa): New variable.
2016-05-23gnu: Add ParDRe.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (pardre): New variable.
2016-05-22gnu: gnu-pw-mgr: Update to 2.0.Efraim Flashner
* gnu/packages/gnu-pw-mgr.scm (gnu-pw-mgr): Update to 2.0.
2016-05-22gnu: imagemagick: Update to 6.9.4-4.Leo Famulari
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.4-4.
2016-05-22gnu: Add python2-rope.Lukas Gradl
* gnu/packages/python.scm (python2-rope): New variable.
2016-05-21gnu: Add gnome-calendar.Kei Yamashita
* gnu/packages/gnome.scm (gnome-calendar): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-05-21gnu: Add envstore.Matthew Jordan
* gnu/package/shellutils.scm: New file. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-05-21gnu: Add sicp.Jan Nieuwenhuizen
* gnu/packages/scheme.scm (sicp): New variable. Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2016-05-21gnu: Add dia.Roel Janssen
* gnu/packages/gnome.scm (dia): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-05-20gnu: linux-libre: Update to 4.5.5.Mark H Weaver
* gnu/packages/linux.scm (linux-libre): Update to 4.5.5.
2016-05-20gnu: linux-libre-4.4: Update to 4.4.11.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.11.
2016-05-20gnu: Add default gcc-objc++.Ricardo Wurmus
* gnu/packages/gcc.scm (gcc-objc++): New variable.
2016-05-20gnu: Add gcc-objc++-4.9.Ricardo Wurmus
* gnu/packages/gcc.scm (gcc-objc++-4.9): New variable.
2016-05-20gnu: Add default gcc-objc.Ricardo Wurmus
* gnu/packages/gcc.scm (gcc-objc): New variable.
2016-05-20gnu: Add gcc-objc-4.9.Ricardo Wurmus
* gnu/packages/gcc.scm (gcc-objc-4.9): New variable.
2016-05-20gnu: r-rcpparmadillo: Update to 0.6.700.6.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.6.700.6.0. * gnu/packages/maths.scm (armadillo-for-rcpparmadillo): Update to 6.700.6.
2016-05-20gnu: armadillo: Update to 6.700.7.Ricardo Wurmus
* gnu/packages/maths.scm (armadillo): Update to 6.700.7.
2016-05-20gnu: r-genomation: Update to 1.4.2.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-genomation): Update to 1.4.2.
2016-05-20gnu: r-jsonlite: Update to 0.9.20.Ricardo Wurmus
* gnu/packages/web.scm (r-jsonlite): Update to 0.9.20.
2016-05-20gnu: r-plotly: Update to 3.6.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-plotly): Update to 3.6.0.
2016-05-20gnu: r-matrixstats: Update to 0.50.2.Ricardo Wurmus
* gnu/packages/statistics.scm (r-matrixstats): Update to 0.50.2.
2016-05-20gnu: r-r-rsp: Update to 0.30.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-r-rsp): Update to 0.30.0.
2016-05-20gnu: r-rmarkdown: Update to 0.9.6.Ricardo Wurmus
* gnu/packages/statistics.scm (r-rmarkdown): Update to 0.9.6.
2016-05-20gnu: r-plotrix: Update to 3.6-2.Ricardo Wurmus
* gnu/packages/statistics.scm (r-plotrix): Update to 3.6-2.
2016-05-20gnu: r-devtools: Update to 1.11.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-devtools): Update to 1.11.1.
2016-05-20gnu: r-git2r: Update to 0.15.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-git2r): Update to 0.15.0.
2016-05-20gnu: r-openssl: Update to 0.9.3.Ricardo Wurmus
* gnu/packages/statistics.scm (r-openssl): Update to 0.9.3.
2016-05-20gnu: r-testthat: Update to 1.0.2.Ricardo Wurmus
* gnu/packages/statistics.scm (r-testthat): Update to 1.0.2.
2016-05-20gnu: r-knitr: Update to 1.13.Ricardo Wurmus
* gnu/packages/statistics.scm (r-knitr): Update to 1.13.
2016-05-20gnu: r-highr: Update to 0.6.Ricardo Wurmus
* gnu/packages/statistics.scm (r-highr): Update to 0.6.
2016-05-20gnu: r-formatr: Update to 1.4.Ricardo Wurmus
* gnu/packages/statistics.scm (r-formatr): Update to 1.4.
2016-05-20gnu: r-evaluate: Update to 0.9.Ricardo Wurmus
* gnu/packages/statistics.scm (r-evaluate): Update to 0.9.
2016-05-20gnu: r-bh: Update to 1.60.0-2.Ricardo Wurmus
* gnu/packages/statistics.scm (r-bh): Update to 1.60.0-2.
2016-05-20gnu: r-dbi: Update to 0.4-1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-dbi): Update to 0.4-1.
2016-05-20gnu: r-rcpp: Update to 0.12.5.Ricardo Wurmus
* gnu/packages/statistics.scm (r-rcpp): Update to 0.12.5.
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