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2020-06-28services: Add rshiny service.Efraim Flashner
* gnu/services/science.scm: New file. (<rshiny-configuration>): New record. (rshiny-shepherd-service-type): New variable. * doc/guix.texi (Miscellaneous Services): Document it. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2020-06-28gnu: emacs-nov-el: Update to 0.3.1.Simon South
* gnu/packages/emacs-xyz.scm (emacs-nov-el): Update to 0.3.1. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-06-28gnu: emacs-nov-el: Use version tag instead of commit.Simon South
* gnu/packages/emacs-xyz.scm (emacs-nov-el): Remove let binding and associated comment; correct indentation. [source]: Use version tag as commit identifier now that upstream has restored this information. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-06-28gnu: r-qtl2: Update synopsis, description.Efraim Flashner
* gnu/packages/bioinformatics.scm (r-qtl2)[synopsis]: Use upstream's synopsis. [description]: Same.
2020-06-28gnu: r-qtl2: Update to 0.22-8.Efraim Flashner
* gnu/packages/bioinformatics.scm (r-qtl2): Update to 0.22-8. [source]: Download from cran.
2020-06-28gnu: Add rust-scrypt-0.2.Efraim Flashner
* gnu/packages/crates-io.scm (rust-scrypt-0.2): New variable.
2020-06-28gnu: Add rust-pbkdf2-0.3.Efraim Flashner
* gnu/packages/crates-io.scm (rust-pbkdf2-0.3): New variable.
2020-06-28gnu: Add rust-hmac-0.7.Efraim Flashner
* gnu/packages/crates-io.scm (rust-hmac-0.7): New variable.
2020-06-28gnu: Add rust-md-5-0.8.Efraim Flashner
* gnu/packages/crates-io.scm (rust-md-5-0.8): New variable.
2020-06-28gnu: Add rust-md5-asm-0.4.Efraim Flashner
* gnu/packages/crates-io.scm (rust-md5-asm-0.4): New variable.
2020-06-27gnu: emacs-idris-mode: Update to 1.0.Eric Bavier
* gnu/packages/emacs-xyz.scm (emacs-idris-mode): Update to 1.0. [description]: Mention compatibility with Idris 1.
2020-06-28gnu: r-fpc: Update to 2.2-7.Ricardo Wurmus
* gnu/packages/statistics.scm (r-fpc): Update to 2.2-7.
2020-06-28gnu: r-openssl: Update to 1.4.2.Ricardo Wurmus
* gnu/packages/statistics.scm (r-openssl): Update to 1.4.2. [native-inputs]: Add r-knitr.
2020-06-28gnu: r-roxygen2: Update to 7.1.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-roxygen2): Update to 7.1.1. [native-inputs]: Add r-knitr.
2020-06-28gnu: r-directlabels: Update to 2020.6.17.Ricardo Wurmus
* gnu/packages/cran.scm (r-directlabels): Update to 2020.6.17. [native-inputs]: Add r-knitr.
2020-06-28gnu: r-rgdal: Update to 1.5-12.Ricardo Wurmus
* gnu/packages/cran.scm (r-rgdal): Update to 1.5-12.
2020-06-28gnu: r-flexdashboard: Update to 0.5.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-flexdashboard): Update to 0.5.2. [source]: Delete minified JavaScript files in a snippet.
2020-06-28gnu: r-rcppparallel: Update to 5.0.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-rcppparallel): Update to 5.0.2.
2020-06-28gnu: r-emmeans: Update to 1.4.8.Ricardo Wurmus
* gnu/packages/cran.scm (r-emmeans): Update to 1.4.8.
2020-06-28gnu: r-raster: Update to 3.3-7.Ricardo Wurmus
* gnu/packages/cran.scm (r-raster): Update to 3.3-7.
2020-06-28gnu: r-sjlabelled: Update to 1.1.6.Ricardo Wurmus
* gnu/packages/cran.scm (r-sjlabelled): Update to 1.1.6.
2020-06-28gnu: r-officer: Update to 0.3.12.Ricardo Wurmus
* gnu/packages/cran.scm (r-officer): Update to 0.3.12.
2020-06-28gnu: r-ggpubr: Update to 0.4.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggpubr): Update to 0.4.0.
2020-06-28gnu: r-renv: Update to 0.11.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-renv): Update to 0.11.0.
2020-06-28gnu: r-jsonlite: Update to 1.7.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-jsonlite): Update to 1.7.0. [native-inputs]: Add r-knitr.
2020-06-28gnu: r-scater: Update to 1.16.2.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-scater): Update to 1.16.2.
2020-06-28gnu: r-biocviews: Update to 1.56.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.56.1.
2020-06-28gnu: r-dexseq: Update to 1.34.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.34.1.
2020-06-27gnu: dropbear: Update to 2020.80 [fix for CVE-2018-20685].Tobias Geerinckx-Rice
* gnu/packages/ssh.scm (dropbear): Update to 2020.80.
2020-06-27gnu: lxqt: Update to 0.15.0.André Batista
* gnu/packages/lxqt.scm (libstatgrab): Update to 0.92. (lxqt-build-tools): Update to 0.7.0. (libqtxdg): Update to 3.5.0. (liblxqt): Update to 0.15.1. (libsysstat): Update to 0.4.3. (lxqt-about): Update to 0.15.0. (lxqt-admin): Update to 0.15.0. (lxqt-config): Update to 0.15.0. (lxqt-globalkeys): Update to 0.15.0. (lxqt-notificationd): Update to 0.15.0. (lxqt-openssh-askpass): Update to 0.15.0. (lxqt-panel): Update to 0.15.1. (lxqt-policykit): Update to 0.15.0. (lxqt-powermanagement): Update to 0.15.0. (lxqt-qtplugin): Update to 0.15.1. (lxqt-runner): Update to 0.15.0. (lxqt-session): Update to 0.15.0. (lxqt-sudo): Update to 0.15.0. (lxqt-themes): Update to 0.15.0. (libfm-qt): Update to 0.15.1. (pcmanfm-qt): Update to 0.15.1. (compton-conf): Update to 0.15.0. (lximage-qt): Update to 0.15.0. (obconf-qt): Update to 0.15.0. (pavucontrol-qt): Update to 0.15.0. (qps): Update to 2.1.0. (qps)[inputs]: Add kwindowsystem, liblxqt and libqtxdg. (qtermwidget): Update to 0.15.0. (qterminal): Update to 0.15.0. (screengrab): Update to 2.0.1. (lxqt-archiver): Update to 0.2.0. (lxqt-archiver)[origin]: Use tarball release. (lxqt-connman-applet): Update to 0.15.0. (lxqt-connman-applet)[arguments]: Add new patch phase. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-06-27gnu: libtiff: Use HTTPS.Timotej Lazar
* gnu/packages/image.scm (libtiff)[source]: Use HTTPS. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-06-27gnu: Add autofs.Tobias Geerinckx-Rice
* gnu/packages/file-systems.scm (autofs): New public variable. Co-authored-by: Oleg Pykhalov <go.wigust@gmail.com>
2020-06-27gnu: python-setproctitle: Fix indentation.Tobias Geerinckx-Rice
* gnu/packages/python-xyz.scm (python-setproctitle): Re-indent.
2020-06-27gnu: python-setproctitle: Fix build.Tobias Geerinckx-Rice
* gnu/packages/python-xyz.scm (python-setproctitle)[arguments]: Add ‘--embed’ to $PYCONFIG.
2020-06-27gnu: Add r-shapforxgboost.Peter Lo
* gnu/packages/cran.scm (r-shapforxgboost): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-06-27gnu: Add emacs-browse-kill-ring.Ricardo Wurmus
* gnu/packages/emacs-xyz.scm (emacs-browse-kill-ring): New variable.
2020-06-27gnu: x265: Update to 3.4.Marius Bakke
* gnu/packages/patches/x265-arm-flags.patch: Update patch. * gnu/packages/video.scm (x265): Update to 3.4. [arguments]: Remove obsolete substitution. Disable the newly-added assembly optimizations on AArch64, as they are not implemented for all targets we build.
2020-06-27gnu: libcyaml: Remove unused input.Marius Bakke
* gnu/packages/web.scm (libcyaml)[native-inputs]: Remove GIT.
2020-06-27gnu: ilmbase: Update to 2.5.2.Marius Bakke
* gnu/packages/patches/ilmbase-fix-test-arm.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/graphics.scm (ilmbase): Update to 2.5.2. [source](patches): Remove 'ilmbase-fix-test-arm.patch'. (openexr)[arguments]: Really increase test timeout, as the previous fix was ineffective.
2020-06-27gnu: libzip: Update to 1.7.1.Marius Bakke
* gnu/packages/compression.scm (libzip): Update to 1.7.1.
2020-06-27gnu: exempi: Delete the static library.Marius Bakke
* gnu/packages/freedesktop.scm (exempi)[arguments]: Add phase to delete libexempi.a.
2020-06-27gnu: exempi: Update to 2.5.2.Marius Bakke
* gnu/packages/freedesktop.scm (exempi): Update to 2.5.2.
2020-06-27gnu: python-gevent: Update to 20.6.2.Marius Bakke
* gnu/packages/python-xyz.scm (python-gevent): Update to 20.6.2. (python2-gevent)[native-inputs]: Add PYTHON2-SELECTORS2.
2020-06-27gnu: python-greenlet: Update to 0.4.16.Marius Bakke
* gnu/packages/python-xyz.scm (python-greenlet): Update to 0.4.16.
2020-06-27gnu: Add python2-selectors2.Marius Bakke
* gnu/packages/python-xyz.scm (python2-selectors2): New public variable.
2020-06-27gnu: dav1d: Update to 0.7.1.Marius Bakke
* gnu/packages/video.scm (dav1d): Update to 0.7.1.
2020-06-27gnu: libconfuse: Do not build static libraries.Marius Bakke
* gnu/packages/textutils.scm (libconfuse)[arguments]: New field.
2020-06-27gnu: libconfuse: Update to 3.3.Marius Bakke
* gnu/packages/textutils.scm (libconfuse): Update to 3.3.
2020-06-27gnu: spdlog: Update to 1.6.1.Marius Bakke
* gnu/packages/logging.scm (spdlog): Update to 1.6.1. [arguments]: Add "-DSPDLOG_BUILD_TESTS=ON" in #:configure-flags.
2020-06-27gnu: feh: Update to 3.4.1.Marius Bakke
* gnu/packages/image-viewers.scm (feh): Update to 3.4.1.
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