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2019-07-24gnu: Add r-consensusclusterplus.zimoun
* gnu/packages/bioconductor.scm (r-consensusclusterplus): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-07-24gnu: Add r-flowutils.zimoun
* gnu/packages/bioconductor.scm (r-flowutils): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-07-24gnu: Add r-flowcore.zimoun
* gnu/packages/bioconductor.scm (r-flowcore): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-07-24gnu: Add r-all.zimoun
* gnu/packages/bioconductor.scm (r-all): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-07-24gnu: Add r-kableextra.zimoun
* gnu/packages/cran.scm (r-kableextra): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-07-24gnu: Add r-umap.zimoun
* gnu/packages/cran.scm (r-umap): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-07-24gnu: emacs-gitpatch: Update to 0.5.1.Jelle Licht
* gnu/packages/emacs-xyz.scm (emacs-gitpatch): Update to 0.5.1.
2019-07-24gnu: terminator: Propagate gsettings-desktop-schemas.Tobias Geerinckx-Rice
* gnu/packages/gnome.scm (terminator)[propagated-inputs]: Add gsettings-desktop-schemas.
2019-07-24gnu: spice-gtk: Update to 0.37.Tobias Geerinckx-Rice
* gnu/packages/spice.scm (spice-gtk): Update to 0.37. [propagated-inputs]: Use latest spice-protocol. (spice-protocol-0.12): Remove unused variable.
2019-07-24gnu: libvirt-glib: Propagate pkg-config requirements.Tobias Geerinckx-Rice
* gnu/packages/virtualization.scm (libvirt-glib)[inputs]: Move glib, libvirt, libxml2, and gobject-introspection… [native-inputs]: …here.
2019-07-24gnu: libvirt-glib: Update to 2.0.0.Tobias Geerinckx-Rice
* gnu/packages/virtualization.scm (libvirt-glib): Update to 2.0.0. [arguments]: Remove ‘fix-tests’ phase.
2019-07-24gnu: julia: Update to 1.1.1.Nicolò Balzarotti
* gnu/packages/julia.scm (libuv-julia): Update to commit 26dbe56. (libunwind-for-julia): Remove. (llvm-patch-url, llvm-patch): New procedures. (llvm-julia): New variable. (julia): Update to 1.1.1. [arguments]: Adjust 'prepare-deps' to new set of dependencies. Adjust 'hardcode-soname-map': remove openlibm and libfftw handling. Update file names in 'fix-include-and-link-paths' and 'hardcode-paths'. Adjust 'disable-broken-tests'. Pass PREFIX, LIBFLAS, and LIBBLASNAME in #:make-flags; update other flags. [inputs]: Replace LLVM-3.9.1 with LLVM-JULIA. Replace LIBUNWIND-FOR-JULIA with LIBUNWIND. Add "rmath" and "libwhich". [native-inputs]: Remove "unicode-data". Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2019-07-24gnu: llvm: Add 'system->llvm-target' procedure.Ludovic Courtès
* gnu/packages/llvm.scm (system->llvm-target): New procedure.
2019-07-23gnu: terminology: Update to 1.5.0.Efraim Flashner
* gnu/packages/enlightenment.scm (terminology): Update to 1.5.0.
2019-07-23gnu: emacs-request: Update to 0.3.1.Mathieu Lirzin
* gnu/packages/emacs-xyz.scm (emacs-request): Update to 0.3.1. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2019-07-23gnu: emacs-google-translate: Update to 0.11.18.Mathieu Lirzin
* gnu/packages/emacs-xyz.scm (emacs-google-translate): Update to 0.11.18. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2019-07-23gnu: mallard-ducktype: Update to 1.0.2.Jack Hill
* gnu/packages/python-xyz.scm (mallard-ducktype) Update to 1.0.2. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2019-07-22gnu: harmonist: Update to 0.2.Julien Lepiller
* gnu/packages/games.scm (harmonist): Update to 0.2.
2019-07-22Merge branch 'master' into core-updatesMarius Bakke
2019-07-22gnu: vlc: Build against libvpx@1.8.Marius Bakke
* gnu/packages/video.scm (vlc)[inputs]: Change LIBVPX-1.7 to LIBVPX.
2019-07-22gnu: libvpx: Update to 1.8.1.Marius Bakke
* gnu/packages/video.scm (libvpx): Update to 1.8.1.
2019-07-22gnu: zstd: Update to 1.4.1.Marius Bakke
* gnu/packages/compression.scm (zstd): Update to 1.4.1.
2019-07-22gnu: zstd: Move libraries to separate outputs.Marius Bakke
* gnu/packages/compression.scm (zstd)[outputs]: New field. [arguments]: Add phase 'adjust-libary-locations'. Pass LIBDIR and INCLUDEDIR in <#:make-flags>. * gnu/packages/backup.scm (borg)[inputs]: Change ZSTD to ZSTD:LIB. * gnu/packages/sync.scm (casync)[inputs]: Likewise. * gnu/packages/tor.scm (tor)[inputs]: Likewise. * gnu/packages/linux.scm (btrfs-progs)[inputs]: Likewise. Add ZSTD:STATIC.
2019-07-22gnu: whois: Update to 5.5.0.Marius Bakke
* gnu/packages/networking.scm (whois): Update to 5.5.0.
2019-07-22gnu: jsoncpp: Update to 1.9.1.Marius Bakke
* gnu/packages/serialization.scm (jsoncpp): Update to 1.9.1.
2019-07-22gnu: ffmpeg: Update to 4.1.4.Marius Bakke
* gnu/packages/video.scm (ffmpeg): Update to 4.1.4.
2019-07-22gnu: x265: Update to 3.1.1.Marius Bakke
* gnu/packages/video.scm (x265): Update to 3.1.1.
2019-07-22gnu: ungoogled-chromium: Enable parallel build.Marius Bakke
...but limit the memory usage. Tested with --cores=8 on a 16 GiB RAM machine. * gnu/packages/chromium.scm (ungoogled-chromium)[arguments]: Remove <#:parallel-build?>. Add "jumbo_file_merge_limit=8" in <#:configure-flags>.
2019-07-22gnu: htslib: Propagate zlib.Ricardo Wurmus
Reported by Vedran Franke <Vedran.Franke@mdc-berlin.de>. * gnu/packages/bioinformatics.scm (htslib)[inputs]: Move zlib from here... [propagated-inputs]: ...to here.
2019-07-22gnu: perl-net-http: Update to 6.19.Efraim Flashner
* gnu/packages/web.scm (perl-net-httpd): Update to 6.19.
2019-07-22gnu: perl-test-simple: Update to 1.302164.Efraim Flashner
* gnu/packages/perl-check.scm (perl-test-simple): Update to 1.302164.
2019-07-22gnu: perl-cpan-meta: Update to 2.150010.Efraim Flashner
* gnu/packages/perl.scm (perl-cpan-meta): Update to 2.150010.
2019-07-22gnu: perl-clone: Update to 0.42.Efraim Flashner
* gnu/packages/perl.scm (perl-clone): Update to 0.42.
2019-07-22gnu: perl-hash-merge: Update to 0.300.Efraim Flashner
* gnu/packages/perl.scm (perl-hash-merge): Update to 0.300. [inputs]: Add perl-clone-choose.
2019-07-22gnu: mallard-ducktype: Run tests.Efraim Flashner
* gnu/packages/python-xyz.scm (mallard-ducktype)[arguments]: Replace 'check phase to run test suite.
2019-07-22gnu: oil-shell: Update to 0.6.0Robert Vollmert
* gnu/packages/shells.scm (oil-shell): Update to 0.6.0. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2019-07-21gnu: libreoffice: Fix xdg-open absolute paths.Chris Marusich
Fixes: <https://bugs.gnu.org/36728>. * gnu/packages/libreoffice.scm (libreoffice) [inputs]: Add xdg-utils. [arguments][#:phases][prepare-src]: Replace hard-coded absolute paths to xdg-open in the source with the path to xdg-open in the xdg-utils input.
2019-07-21gnu: libosinfo: Update to 1.5.0.Tobias Geerinckx-Rice
* gnu/packages/virtualization.scm (libosinfo): Update to 1.5.0. [arguments]: Remove ‘disable-broken-test’ phase. [native-inputs]: Remove check.
2019-07-21gnu: linux-libre: Update to 5.2.2.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-5.2-version): Update to 5.2.2. (linux-libre-5.2-pristine-source): Update hash.
2019-07-21gnu: linux-libre@4.19: Update to 4.19.60.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.60. (linux-libre-4.19-pristine-source): Update hash.
2019-07-21gnu: linux-libre@4.14: Update to 4.14.134.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.134. (linux-libre-4.14-pristine-source): Update hash.
2019-07-21gnu: linux-libre@4.9: Update to 4.9.186.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.186. (linux-libre-4.9-pristine-source): Update hash.
2019-07-21gnu: linux-libre@4.4: Update to 4.4.186.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.186. (linux-libre-4.4-pristine-source): Update hash.
2019-07-21gnu: linux-libre: Deblob the linux-libre source tarball ourselves.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-deblob-scripts, deblob-scripts-5.2) (deblob-scripts-4.19, deblob-scripts-4.14, deblob-scripts-4.9) (deblob-scripts-4.4, computed-origin-method, %upstream-linux-source) (source-with-patches, make-linux-libre-source, linux-libre-5.2-version) (linux-libre-5.2-pristine-source, linux-libre-5.2-source) (linux-libre-4.19-pristine-source, linux-libre-4.19-source) (linux-libre-4.14-pristine-source, linux-libre-4.14-source) (linux-libre-4.9-pristine-source, linux-libre-4.9-source) (linux-libre-4.4-pristine-source, linux-libre-4.4-source) (linux-libre-pristine-source, linux-libre-source) (linux-libre-headers-4.9, linux-libre-headers-4.4) (make-linux-libre-headers*, make-linux-libre*): New variables. (%linux-libre-version): Rename to ... (linux-libre-version): ... this, and make it equal to linux-libre-5.2-version. (%linux-libre-4.19-version, %linux-libre-4.14-version) (%linux-libre-4.9-version, %linux-libre-4.4-version): Rename to ... (linux-libre-4.19-version, linux-libre-4.14-version) (linux-libre-4.9-version, linux-libre-4.4-version): ... these. (%linux-libre-4.19-hash, %linux-libre-4.19-patches) (%linux-libre-4.14-hash, %linux-libre-4.14-patches) (%linux-libre-hash, %linux-libre-5.2-patches): Remove variables. (make-linux-libre-headers, make-linux-libre): Reformulate in terms of make-linux-libre-headers* and make-linux-libre*, respectively. (linux-libre-5.2, linux-libre-4.19, linux-libre-4.14, linux-libre-4.9) (linux-libre-4.4, linux-libre-arm-veyron, linux-libre-arm-generic) (linux-libre-arm-generic-4.19, linux-libre-arm-generic-4.14) (linux-libre-arm-omap2plus, linux-libre-arm-omap2plus-4.19) (linux-libre-arm-omap2plus-4.14): Adapt and use make-linux-libre*. (linux-libre-headers-5.2, linux-libre-headers-4.19) (linux-libre-headers-4.14): Adapt and use make-linux-libre-headers*.
2019-07-21gnu: Add darkice.Mark H Weaver
* gnu/packages/audio.scm (darkice): New variable. * gnu/packages/patches/darkice-workaround-fpermissive-error.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2019-07-21gnu: pybind11: Update to 2.3.0.Marius Bakke
* gnu/packages/python-xyz.scm (pybind11): Update to 2.3.0.
2019-07-21gnu: emacs-ivy: Update to 0.12.0.Brian Leung
* gnu/packages/emacs-xyz.scm (emacs-ivy): Update to 0.12.0. Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2019-07-21gnu: Add python-gdal.宋文武
For <https://issues.guix.gnu.org/issue/36623>, thank to Arne Babenhauserheide for the original patch. * gnu/packages/geo.scm (python-gdal): New package.
2019-07-21gnu: qtwebkit: Update to 5.212.0-alpha3.Efraim Flashner
* gnu/packages/qt.scm (qtwebkit): Update to 5.212.0-alpha3.
2019-07-19gnu: Add ghc-hasktags.Brian Leung
* gnu/packages/haskell.scm (ghc-hasktags): New variable.
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