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2019-06-18gnu: gemmlowp-for-tensorflow: Use SSE2.Ricardo Wurmus
* gnu/packages/machine-learning.scm (gemmlowp-for-tensorflow)[arguments]: Only enable SSE2, not SSE4.1 on i686 and x86_64 architectures.
2019-06-18gnu: Add python-matplotlib-venn.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-matplotlib-venn): New variable.
2019-06-18gnu: python-ipython: Update to 7.5.0Ricardo Wurmus
* gnu/packages/python-xyz.scm (python2-ipython): Do not inherit from python-ipython. [outputs]: Remove separate "doc" output. [native-inputs]: Remove python-sphinx, python-sphinx-rtd-theme, texinfo, and the texlive-union consisting of texlive-fonts-amsfonts, texlive-fonts-ec, texlive-generic-ifxetex, texlive-generic-pdftex, texlive-latex-amsfonts, texlive-latex-capt-of, texlive-latex-cmap, texlive-latex-environ, texlive-latex-eqparbox, texlive-latex-etoolbox, texlive-latex-expdlist, texlive-latex-fancyhdr, texlive-latex-fancyvrb, texlive-latex-fncychap, texlive-latex-float, texlive-latex-framed, texlive-latex-geometry, texlive-latex-graphics, texlive-latex-hyperref, texlive-latex-mdwtools, texlive-latex-multirow, texlive-latex-oberdiek, texlive-latex-parskip, texlive-latex-preview, texlive-latex-tabulary, texlive-latex-threeparttable, texlive-latex-titlesec, texlive-latex-trimspaces, texlive-latex-ucs, texlive-latex-upquote, texlive-latex-url, texlive-latex-varwidth, and texlive-latex-wrapfig. [arguments]: Remove "install-doc" phase; rename "fix-tests" phase to "delete-broken-tests" and adjust. (python-ipython): Update to 7.5.0. [outputs]: Remove separate "doc" output. [propagated-inputs]: Add python-backcall and python-jedi; replace python-prompt-toolkit-1 with python-prompt-toolkit. [native-inputs]: Remove python-sphinx, python-sphinx-rtd-theme, texinfo, and the texlive-union consisting of texlive-fonts-amsfonts, texlive-fonts-ec, texlive-generic-ifxetex, texlive-generic-pdftex, texlive-latex-amsfonts, texlive-latex-capt-of, texlive-latex-cmap, texlive-latex-environ, texlive-latex-eqparbox, texlive-latex-etoolbox, texlive-latex-expdlist, texlive-latex-fancyhdr, texlive-latex-fancyvrb, texlive-latex-fncychap, texlive-latex-float, texlive-latex-framed, texlive-latex-geometry, texlive-latex-graphics, texlive-latex-hyperref, texlive-latex-mdwtools, texlive-latex-multirow, texlive-latex-oberdiek, texlive-latex-parskip, texlive-latex-preview, texlive-latex-tabulary, texlive-latex-threeparttable, texlive-latex-titlesec, texlive-latex-trimspaces, texlive-latex-ucs, texlive-latex-upquote, texlive-latex-url, texlive-latex-varwidth, and texlive-latex-wrapfig. [arguments]: Remove "install-doc" phase; simplify "fix-tests" phase. [properties]: Remove. (python-ipython-documentation): New variable.
2019-06-18gnu: python-ipykernel: Update to 5.1.1.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-ipykernel): Update to 5.1.1.
2019-06-18gnu: python2-ipykernel: Split from python-ipykernel.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python2-ipykernel): Define without package-with-python2.
2019-06-18gnu: Add python-backcall.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-backcall): New variable.
2019-06-18gnu: stunnel: Update to 5.55.Tobias Geerinckx-Rice
* gnu/packages/web.scm (stunnel): Update to 5.55.
2019-06-18gnu: gaupol: Update to 1.6.Tobias Geerinckx-Rice
* gnu/packages/video.scm (gaupol): Update to 1.6.
2019-06-18gnu: eternalterminal: Update to 5.1.10.Tobias Geerinckx-Rice
* gnu/packages/terminals.scm (eternalterminal): Update to 5.1.10.
2019-06-18gnu: mercurial: Update to 5.0.1.Tobias Geerinckx-Rice
* gnu/packages/version-control.scm (mercurial): Update to 5.0.1.
2019-06-18gnu: rtv: Update to 1.27.0.Tobias Geerinckx-Rice
* gnu/packages/syndication.scm (rtv): Update to 1.27.0.
2019-06-18gnu: libnftnl: Update to 1.1.3.Tobias Geerinckx-Rice
* gnu/packages/linux.scm (libnftnl): Update to 1.1.3.
2019-06-18gnu: gandi.cli: Update to 1.5.Tobias Geerinckx-Rice
* gnu/packages/networking.scm (gandi.cli): Update to 1.5.
2019-06-18gnu: hcxdumptool: Update to 5.1.5.Tobias Geerinckx-Rice
* gnu/packages/networking.scm (hcxdumptool): Update to 5.1.5.
2019-06-18gnu: hcxtools: Update to 5.1.6.Tobias Geerinckx-Rice
* gnu/packages/networking.scm (hcxtools): Update to 5.1.6.
2019-06-18gnu: mpd-mpc: Update to 0.32.Tobias Geerinckx-Rice
* gnu/packages/mpd.scm (mpd-mpc): Update to 0.32.
2019-06-18gnu: radare2: Update to 3.5.1.Tobias Geerinckx-Rice
* gnu/packages/engineering.scm (radare2): Update to 3.5.1.
2019-06-17gnu: rust: Update to 1.35.0.Ivan Petkov
* gnu/packages/rust.scm (rust): Rename to... (rust-1.34): ...this. (rust): New variable.
2019-06-18gnu: Add mako.Gábor Boskovits
* gnu/packages/wm.scm (mako): New variable.
2019-06-18gnu: Add libhomfly.Andreas Enge
* gnu/packages/sagemath.scm (libhomfly): New variable.
2019-06-18gnu: Add libbraiding.Andreas Enge
* gnu/packages/sagemath.scm (libbraiding): New variable.
2019-06-17gnu: python-flask-script: Fix tests.Danny Milosavljevic
* gnu/packages/python-web.scm (python-flask-script)[arguments]<#:phases>[patch-tests]: New phase.
2019-06-17gnu: python-scikit-learn: Update to 0.20.3.Ricardo Wurmus
* gnu/packages/machine-learning.scm (python-scikit-learn): Update to 0.20.3.
2019-06-17gnu: Add tbsp.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (tbsp): New variable.
2019-06-17gnu: Add rw.Andreas Enge
* gnu/packages/graph.scm (rw): New variable.
2019-06-17gnu: edge-addition-planarity-suite: Move to the (gnu packages graph) module.Andreas Enge
* gnu/packages/maths.scm (edge-addition-planarity-suite): Move from here... * gnu/packages/maths.scm (edge-addition-planarity-suite): ...to here.
2019-06-17gnu: Fix freeorion build.Nicolas Goaziou
* gnu/packages/games.scm (freeorion)[arguments]: Fix font unbundling.
2019-06-17gnu: Add edge-addition-planarity-suite.Andreas Enge
* gnu/packages/maths.scm (edge-addition-planarity-suite): New variable.
2019-06-17gnu: python-cypari2: Update to 2.1.1.Andreas Enge
* gnu/packages/sagemath.scm (python-cypari2): Update to 2.1.1.
2019-06-17gnu: Add cliquer.Andreas Enge
* gnu/packages/sagemath.scm (cliquer): New variable.
2019-06-17gnu: busybox: Don't install to usr.Efraim Flashner
* gnu/packages/busybox.scm (busybox)[arguments]: Add a custom phase to prevent installing to %PREFIX/usr.
2019-06-17gnu: waybar: Add optional dependencies.Gábor Boskovits
* gnu/packages/wm.scm(waybar)[inputs]: Add libdbusmenu, libnl, libmpdclient and pulseaudio.
2019-06-17gnu: python-scipy: Update to 1.2.2.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-scipy): Update to 1.2.2.
2019-06-17gnu: oil-shell: Update to 0.6pre22.Robert Vollmert
It turns out the currently packaged release fails to build for me. According to upstream, the 0.6 pre-releases are preferable to currently packaged 0.5. gnu/packages/shells.scm (oil-shell): Update to 0.6pre22. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-06-17gnu: kakoune: Remove dependency on boost.Robert Vollmert
kakoune builds without boost since a while already. * gnu/packages/text-editors.scm (kakoune)[inputs]: Remove boost. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-06-17vm: 'system-docker-image' builds in a UTF-8 locale.Ludovic Courtès
Fixes <https://bugs.gnu.org/36215>. Reported by Björn Höfling <bjoern.hoefling@bjoernhoefling.de>. This is a followup to 9c941364bfc0120e3ab5c5c4cc71a9a302d59a2b. * gnu/system/vm.scm (system-docker-image)[build]: Set GUIX_LOCPATH and call 'setlocale'.
2019-06-17gnu: open-zwave: Unbundle hidapi.Ludovic Courtès
* gnu/packages/patches/open-zwave-hidapi.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/zwave.scm (open-zwave)[source](patches): New field. (snippet): Delete 'cpp/hidapi'. [native-inputs]: Add PKG-CONFIG. [inputs]: Add HIDAPI.
2019-06-17gnu: gap: Update to 4.10.1.Andreas Enge
* gnu/packages/algebra.scm (gap): Update to 4.10.1. Install headers and library files by hand, since the make targets have disappeared. Delete the special check phase, since the "make check" target has appeared. Remove a package that is no longer recommended, and enable two recommended packages with clarified licenses.
2019-06-17gnu: cmst: Don't install files to usr.Efraim Flashner
* gnu/packages/connman.scm (cmst)[arguments]: Move custom 'fix-Makefiles phase before 'build. Add more substitutions.
2019-06-17gnu: cava: Don't install files to usr.Efraim Flashner
* gnu/packages/audio.scm (cava)[arguments]: In configure-flags change FONT_DIR to not use 'usr'.
2019-06-17gnu: toybox: Don't install files to usr.Efraim Flashner
* gnu/packages/busybox.scm (toybox)[arguments]: Add custom phase to remove any files installed in $PREFIX/usr.
2019-06-17gnu: xpra: Update to 2.5.2.Rutger Helling
* gnu/packages/xorg.scm (xpra): Update to 2.5.2.
2019-06-16gnu: Add emacs-extend-smime.Chris Marusich
* gnu/packages/emacs-xyz.scm (emacs-extend-smime): New variable.
2019-06-16gnu: Upgrade emacs-default-encrypt to 4.4.Chris Marusich
* gnu/packages/emacs-xyz.scm (emacs-default-encrypt) <version>: Upgrade to 4.4. <sha256>: Update accordingly. <uri, home-page>: Honor changes to upstream's website.
2019-06-17gnu: r-rhisat2: Update to 1.0.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-rhisat2): Update to 1.0.3.
2019-06-17gnu: r-seurat: Update to 3.0.2.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-seurat): Update to 3.0.2.
2019-06-17gnu: r-tximport: Update to 1.12.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-tximport): Update to 1.12.1.
2019-06-17gnu: r-systempiper: Update to 1.18.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-systempiper): Update to 1.18.1.
2019-06-17gnu: r-r-utils: Update to 2.9.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-r-utils): Update to 2.9.0.
2019-06-17gnu: r-dt: Update to 0.7.Ricardo Wurmus
* gnu/packages/statistics.scm (r-dt): Update to 0.7.
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